Wall clock time and date at job start Sat Apr 11 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00108 * 2 1 4 4 C 1.52999 * 109.47155 * 277.11904 * 3 2 1 5 5 H 1.09002 * 112.96554 * 52.93593 * 4 3 2 6 6 C 1.53948 * 113.76966 * 184.60665 * 4 3 2 7 7 C 1.53949 * 86.28905 * 137.90875 * 6 4 3 8 8 N 1.47576 * 113.77224 * 281.10335 * 4 3 2 9 9 C 1.36935 * 134.48834 * 41.05692 * 8 4 3 10 10 H 1.08001 * 120.00636 * 6.83042 * 9 8 4 11 11 C 1.38815 * 120.00055 * 186.82481 * 9 8 4 12 12 N 1.31621 * 119.99739 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00477 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46727 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46962 * 119.99826 * 13 11 9 16 16 H 1.48497 * 109.47165 * 240.00681 * 13 11 9 17 17 C 1.34770 * 120.00068 * 180.02562 * 2 1 3 18 18 O 1.21625 * 120.00259 * 184.69430 * 17 2 1 19 19 C 1.47308 * 120.00088 * 4.69036 * 17 2 1 20 20 C 1.36444 * 126.19324 * 173.83075 * 19 17 2 21 21 N 1.36133 * 106.76675 * 179.75919 * 20 19 17 22 22 C 1.40221 * 126.21825 * 180.21802 * 21 20 19 23 23 C 1.38822 * 120.06590 * 359.72815 * 22 21 20 24 24 C 1.38125 * 119.93147 * 179.67680 * 23 22 21 25 25 C 1.38276 * 120.06629 * 0.61736 * 24 23 22 26 26 C 1.38281 * 120.12867 * 359.68412 * 25 24 23 27 27 C 1.38122 * 120.06634 * 359.97438 * 26 25 24 28 28 C 1.36110 * 107.56318 * 0.24167 * 21 20 19 29 29 N 1.30147 * 109.00639 * 359.97438 * 28 21 20 30 30 H 1.08999 * 109.47030 * 264.27737 * 1 2 3 31 31 H 1.08999 * 109.46860 * 24.27620 * 1 2 3 32 32 H 1.09002 * 109.47277 * 144.27499 * 1 2 3 33 33 H 1.09004 * 109.46653 * 37.11716 * 3 2 1 34 34 H 1.08994 * 109.47165 * 157.11927 * 3 2 1 35 35 H 1.09000 * 113.74561 * 252.25385 * 6 4 3 36 36 H 1.09003 * 113.73739 * 23.45776 * 6 4 3 37 37 H 1.09000 * 113.76916 * 90.69626 * 7 6 4 38 38 H 1.08999 * 113.77176 * 221.98480 * 7 6 4 39 39 H 0.97002 * 119.99855 * 180.02562 * 12 11 9 40 40 H 1.08007 * 126.61760 * 0.02728 * 20 19 17 41 41 H 1.08003 * 120.03342 * 359.97438 * 23 22 21 42 42 H 1.08002 * 119.96535 * 180.30109 * 24 23 22 43 43 H 1.07998 * 119.93515 * 179.69778 * 25 24 23 44 44 H 1.07997 * 119.96436 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.03002 * 180.02562 * 27 26 25 46 46 H 1.08002 * 125.49596 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2977 1.7998 -1.4314 5 1 1.3306 1.8634 -1.9301 6 6 3.1479 3.0767 -1.5614 7 6 3.7373 2.4349 -2.8305 8 7 3.3436 1.1418 -2.2382 9 6 3.7754 -0.1500 -2.3801 10 1 3.2377 -0.9549 -1.9013 11 6 4.9044 -0.4249 -3.1395 12 7 5.5601 0.5560 -3.7228 13 14 5.4932 -2.1871 -3.3338 14 1 4.5886 -3.0965 -2.5853 15 1 5.4854 -2.5558 -4.7722 16 1 6.8729 -2.3099 -2.7986 17 6 2.1389 -1.1671 -0.0005 18 8 3.3520 -1.1690 0.0857 19 6 1.4060 -2.4407 -0.1054 20 6 1.9601 -3.6807 -0.2362 21 7 0.9290 -4.5677 -0.2920 22 6 1.0395 -5.9596 -0.4209 23 6 2.2915 -6.5526 -0.5105 24 6 2.3973 -7.9245 -0.6307 25 6 1.2574 -8.7060 -0.6747 26 6 0.0088 -8.1176 -0.5920 27 6 -0.1031 -6.7468 -0.4646 28 6 -0.2288 -3.8579 -0.2003 29 7 0.0571 -2.5928 -0.0922 30 1 -0.3633 -0.1025 1.0225 31 1 -0.3633 0.9368 -0.4225 32 1 -0.3634 -0.8343 -0.6001 33 1 1.6695 1.9931 0.6202 34 1 3.1991 1.1100 0.3995 35 1 2.5628 3.9756 -1.7554 36 1 3.8714 3.2060 -0.7564 37 1 3.1938 2.6842 -3.7419 38 1 4.8150 2.5651 -2.9289 39 1 6.3488 0.3639 -4.2538 40 1 3.0137 -3.9140 -0.2819 41 1 3.1820 -5.9422 -0.4813 42 1 3.3712 -8.3868 -0.6955 43 1 1.3425 -9.7781 -0.7737 44 1 -0.8797 -8.7306 -0.6263 45 1 -1.0786 -6.2879 -0.3997 46 1 -1.2241 -4.2769 -0.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085609575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:34 Heat of formation + Delta-G solvation = 144.810114 kcal Electronic energy + Delta-G solvation = -29718.700300 eV Core-core repulsion = 25805.786055 eV Total energy + Delta-G solvation = -3912.914245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.48461 -39.54774 -38.92132 -37.37422 -34.85078 -34.20931 -31.88816 -31.64488 -29.94177 -29.69942 -28.11134 -27.58350 -25.95959 -24.07850 -23.71841 -23.10783 -22.46518 -21.15774 -20.91402 -19.31161 -18.86401 -18.16647 -16.76070 -16.62565 -15.98840 -15.82925 -15.70410 -15.16443 -14.98631 -14.86095 -14.39641 -14.29185 -13.91201 -13.66137 -13.55620 -13.50002 -13.15742 -12.96345 -12.51056 -12.29642 -12.15317 -11.91901 -11.51925 -11.40821 -11.24065 -10.89858 -10.81202 -10.70210 -10.52580 -10.38250 -9.98857 -9.78296 -9.50118 -9.46505 -9.28391 -9.04439 -8.89166 -8.53653 -8.39524 -7.83600 -6.57706 -5.47367 -2.77136 0.52902 0.88598 1.94998 2.40030 2.53045 3.39413 3.53197 3.56736 3.60653 3.62436 4.05528 4.24207 4.33926 4.44726 4.58941 4.68189 4.73384 4.87532 4.91880 5.15471 5.30256 5.35259 5.44686 5.51914 5.64062 5.67591 5.73050 5.83476 5.91275 5.95888 6.00024 6.04966 6.12496 6.14456 6.18200 6.25547 6.34234 6.50887 6.54321 6.65518 6.83922 6.91719 7.02568 7.27576 7.47297 7.65133 7.71336 7.87652 8.09502 8.29816 8.92823 9.36195 10.01719 10.87121 11.69812 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.003791 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.015331 B = 7385.033589 C = 9142.219796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.599 5.599 3 C 0.117 3.883 4 C 0.124 3.876 5 H 0.042 0.958 6 C -0.157 4.157 7 C 0.151 3.849 8 N -0.596 5.596 9 C -0.185 4.185 10 H 0.089 0.911 11 C -0.018 4.018 12 N -0.931 5.931 13 Si 0.904 3.096 14 H -0.282 1.282 15 H -0.299 1.299 16 H -0.293 1.293 17 C 0.591 3.409 18 O -0.501 6.501 19 C -0.032 4.032 20 C 0.029 3.971 21 N -0.412 5.412 22 C 0.137 3.863 23 C -0.132 4.132 24 C -0.091 4.091 25 C -0.129 4.129 26 C -0.094 4.094 27 C -0.133 4.133 28 C 0.184 3.816 29 N -0.451 5.451 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.019 0.981 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.190 0.810 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.459 -13.984 9.077 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.332 5.332 3 C -0.007 4.007 4 C 0.016 3.984 5 H 0.059 0.941 6 C -0.196 4.196 7 C 0.026 3.974 8 N -0.322 5.322 9 C -0.313 4.313 10 H 0.107 0.893 11 C -0.212 4.212 12 N -0.580 5.580 13 Si 0.737 3.263 14 H -0.207 1.207 15 H -0.227 1.227 16 H -0.220 1.220 17 C 0.377 3.623 18 O -0.375 6.375 19 C -0.159 4.159 20 C -0.105 4.105 21 N -0.090 5.090 22 C 0.044 3.956 23 C -0.151 4.151 24 C -0.109 4.109 25 C -0.147 4.147 26 C -0.112 4.112 27 C -0.153 4.153 28 C -0.097 4.097 29 N -0.170 5.170 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.207 0.793 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -14.137 -13.603 9.094 21.624 hybrid contribution 0.693 -1.613 -0.509 1.828 sum -13.444 -15.215 8.586 22.044 Atomic orbital electron populations 1.22070 0.79503 1.03271 1.01575 1.47401 1.06874 1.05604 1.73312 1.21893 0.97808 0.83175 0.97785 1.22652 0.93165 0.91232 0.91352 0.94075 1.23781 0.99294 0.95292 1.01272 1.22290 1.00373 0.83584 0.91186 1.46013 1.35947 1.03557 1.46652 1.19410 1.05793 0.82236 1.23835 0.89318 1.24680 0.98122 0.96879 1.01492 1.69828 1.20685 1.29211 1.38325 0.86105 0.78518 0.85247 0.76472 1.20716 1.22661 1.22043 1.16685 0.86115 0.81736 0.77755 1.90910 1.12329 1.86286 1.47962 1.20861 0.89684 0.94100 1.11286 1.22761 0.94532 0.88431 1.04757 1.43050 1.08039 1.04976 1.52980 1.17898 0.95380 0.80470 1.01830 1.21056 0.95981 0.95940 1.02158 1.21090 0.99410 0.92580 0.97854 1.21268 0.92387 1.00410 1.00667 1.21026 0.98137 0.93679 0.98407 1.20833 0.96914 0.94073 1.03493 1.25348 0.91722 0.87126 1.05549 1.70777 1.13442 1.14976 1.17762 0.93785 0.92559 0.88159 0.91760 0.88986 0.93314 0.90711 0.96289 0.90256 0.94383 0.79341 0.84758 0.84850 0.85319 0.84927 0.84940 0.77217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 9.69 59.85 0.58 1.81 16 2 N -0.60 -11.61 2.88 -182.89 -0.53 -12.14 16 3 C 0.12 2.28 5.36 -4.04 -0.02 2.25 16 4 C 0.12 2.67 4.53 -66.86 -0.30 2.37 16 5 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.16 -3.15 7.86 -25.80 -0.20 -3.35 16 7 C 0.15 3.79 7.70 -2.97 -0.02 3.76 16 8 N -0.60 -16.15 3.57 -170.75 -0.61 -16.75 16 9 C -0.18 -5.52 9.12 -15.06 -0.14 -5.66 16 10 H 0.09 2.64 4.23 -52.49 -0.22 2.42 16 11 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 12 N -0.93 -29.52 11.28 55.49 0.63 -28.90 16 13 Si 0.90 24.36 29.55 -169.99 -5.02 19.34 16 14 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 16 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 17 C 0.59 12.74 5.77 -12.58 -0.07 12.66 16 18 O -0.50 -12.60 13.74 5.26 0.07 -12.53 16 19 C -0.03 -0.60 6.67 -83.09 -0.55 -1.16 16 20 C 0.03 0.48 10.58 -16.29 -0.17 0.31 16 21 N -0.41 -5.48 2.97 -61.90 -0.18 -5.67 16 22 C 0.14 1.52 6.63 -83.59 -0.55 0.97 16 23 C -0.13 -1.41 9.46 -39.41 -0.37 -1.79 16 24 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 25 C -0.13 -0.91 10.04 -39.55 -0.40 -1.30 16 26 C -0.09 -0.64 10.04 -39.61 -0.40 -1.04 16 27 C -0.13 -1.10 9.46 -39.41 -0.37 -1.48 16 28 C 0.18 2.26 11.88 -89.68 -1.07 1.20 16 29 N -0.45 -7.02 7.74 -10.97 -0.08 -7.10 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.10 1.63 5.18 -51.93 -0.27 1.36 16 33 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.09 2.06 7.17 -51.93 -0.37 1.68 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 2.20 6.87 -51.93 -0.36 1.85 16 39 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.19 3.11 7.11 -52.48 -0.37 2.74 16 41 H 0.13 1.48 6.78 -52.48 -0.36 1.13 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.79 6.74 -52.49 -0.35 0.43 16 46 H 0.21 1.56 7.03 -52.49 -0.37 1.19 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -37.78 373.78 -10.68 -48.47 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.03 Total: 1.89 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -4.56 Total: 7.76 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.78 Total: -70.56 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.02 Total: 19.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.78 -10.68 -48.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085609575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.278 kcal (2) G-P(sol) polarization free energy of solvation -37.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds