Wall clock time and date at job start Sat Apr 11 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00108 * 2 1 4 4 C 1.52999 * 109.47155 * 277.11904 * 3 2 1 5 5 H 1.09002 * 112.96554 * 52.93593 * 4 3 2 6 6 C 1.53948 * 113.76966 * 184.60665 * 4 3 2 7 7 C 1.53949 * 86.28905 * 137.90875 * 6 4 3 8 8 N 1.47576 * 113.77224 * 281.10335 * 4 3 2 9 9 C 1.36935 * 134.48834 * 41.05692 * 8 4 3 10 10 H 1.08001 * 120.00636 * 6.83042 * 9 8 4 11 11 C 1.38815 * 120.00055 * 186.82481 * 9 8 4 12 12 N 1.31621 * 119.99739 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00477 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46727 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46962 * 119.99826 * 13 11 9 16 16 H 1.48497 * 109.47165 * 240.00681 * 13 11 9 17 17 C 1.34770 * 120.00068 * 180.02562 * 2 1 3 18 18 O 1.21625 * 120.00259 * 184.69430 * 17 2 1 19 19 C 1.47308 * 120.00088 * 4.69036 * 17 2 1 20 20 C 1.36444 * 126.19324 * 173.83075 * 19 17 2 21 21 N 1.36133 * 106.76675 * 179.75919 * 20 19 17 22 22 C 1.40221 * 126.21825 * 180.21802 * 21 20 19 23 23 C 1.38822 * 120.06590 * 359.72815 * 22 21 20 24 24 C 1.38125 * 119.93147 * 179.67680 * 23 22 21 25 25 C 1.38276 * 120.06629 * 0.61736 * 24 23 22 26 26 C 1.38281 * 120.12867 * 359.68412 * 25 24 23 27 27 C 1.38122 * 120.06634 * 359.97438 * 26 25 24 28 28 C 1.36110 * 107.56318 * 0.24167 * 21 20 19 29 29 N 1.30147 * 109.00639 * 359.97438 * 28 21 20 30 30 H 1.08999 * 109.47030 * 264.27737 * 1 2 3 31 31 H 1.08999 * 109.46860 * 24.27620 * 1 2 3 32 32 H 1.09002 * 109.47277 * 144.27499 * 1 2 3 33 33 H 1.09004 * 109.46653 * 37.11716 * 3 2 1 34 34 H 1.08994 * 109.47165 * 157.11927 * 3 2 1 35 35 H 1.09000 * 113.74561 * 252.25385 * 6 4 3 36 36 H 1.09003 * 113.73739 * 23.45776 * 6 4 3 37 37 H 1.09000 * 113.76916 * 90.69626 * 7 6 4 38 38 H 1.08999 * 113.77176 * 221.98480 * 7 6 4 39 39 H 0.97002 * 119.99855 * 180.02562 * 12 11 9 40 40 H 1.08007 * 126.61760 * 0.02728 * 20 19 17 41 41 H 1.08003 * 120.03342 * 359.97438 * 23 22 21 42 42 H 1.08002 * 119.96535 * 180.30109 * 24 23 22 43 43 H 1.07998 * 119.93515 * 179.69778 * 25 24 23 44 44 H 1.07997 * 119.96436 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.03002 * 180.02562 * 27 26 25 46 46 H 1.08002 * 125.49596 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2977 1.7998 -1.4314 5 1 1.3306 1.8634 -1.9301 6 6 3.1479 3.0767 -1.5614 7 6 3.7373 2.4349 -2.8305 8 7 3.3436 1.1418 -2.2382 9 6 3.7754 -0.1500 -2.3801 10 1 3.2377 -0.9549 -1.9013 11 6 4.9044 -0.4249 -3.1395 12 7 5.5601 0.5560 -3.7228 13 14 5.4932 -2.1871 -3.3338 14 1 4.5886 -3.0965 -2.5853 15 1 5.4854 -2.5558 -4.7722 16 1 6.8729 -2.3099 -2.7986 17 6 2.1389 -1.1671 -0.0005 18 8 3.3520 -1.1690 0.0857 19 6 1.4060 -2.4407 -0.1054 20 6 1.9601 -3.6807 -0.2362 21 7 0.9290 -4.5677 -0.2920 22 6 1.0395 -5.9596 -0.4209 23 6 2.2915 -6.5526 -0.5105 24 6 2.3973 -7.9245 -0.6307 25 6 1.2574 -8.7060 -0.6747 26 6 0.0088 -8.1176 -0.5920 27 6 -0.1031 -6.7468 -0.4646 28 6 -0.2288 -3.8579 -0.2003 29 7 0.0571 -2.5928 -0.0922 30 1 -0.3633 -0.1025 1.0225 31 1 -0.3633 0.9368 -0.4225 32 1 -0.3634 -0.8343 -0.6001 33 1 1.6695 1.9931 0.6202 34 1 3.1991 1.1100 0.3995 35 1 2.5628 3.9756 -1.7554 36 1 3.8714 3.2060 -0.7564 37 1 3.1938 2.6842 -3.7419 38 1 4.8150 2.5651 -2.9289 39 1 6.3488 0.3639 -4.2538 40 1 3.0137 -3.9140 -0.2819 41 1 3.1820 -5.9422 -0.4813 42 1 3.3712 -8.3868 -0.6955 43 1 1.3425 -9.7781 -0.7737 44 1 -0.8797 -8.7306 -0.6263 45 1 -1.0786 -6.2879 -0.3997 46 1 -1.2241 -4.2769 -0.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085609575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:33 Heat of formation + Delta-G solvation = 122.190798 kcal Electronic energy + Delta-G solvation = -29719.681147 eV Core-core repulsion = 25805.786055 eV Total energy + Delta-G solvation = -3913.895092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.56783 -40.83023 -39.98250 -39.15832 -36.39350 -35.20921 -34.10049 -32.33360 -30.99291 -30.77794 -29.81045 -29.39926 -27.33838 -25.35241 -25.21376 -24.50888 -23.72215 -22.33957 -21.91603 -20.78334 -20.41619 -19.32427 -18.75709 -17.70202 -17.25689 -17.15735 -16.83606 -16.67123 -16.17684 -15.96253 -15.92244 -15.70835 -15.19709 -15.10823 -14.79053 -14.71190 -14.36317 -14.22230 -13.89120 -13.80256 -13.40854 -13.23610 -13.03136 -12.96788 -12.66382 -12.60618 -12.36966 -12.31236 -12.12515 -11.79045 -11.77360 -11.41959 -11.25999 -11.21001 -10.80389 -10.64956 -10.09218 -9.99913 -9.46672 -9.32072 -8.71780 -7.77926 -5.06822 -0.28902 0.26727 0.76982 1.30848 1.35635 1.40226 1.44561 1.48149 2.19141 2.51494 2.56654 2.73332 3.23977 3.41132 3.46655 3.55622 3.60831 3.85565 3.98634 4.01434 4.09193 4.20377 4.30370 4.36909 4.38173 4.43440 4.54390 4.56416 4.61458 4.72956 4.74233 4.88455 4.93660 4.98513 5.00230 5.08960 5.17015 5.27063 5.33137 5.41440 5.44661 5.47238 5.68483 5.75083 5.79456 5.86116 6.10012 6.12893 6.49976 6.67548 7.08461 7.37117 7.76308 8.68266 9.39016 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.003791 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.015331 B = 7385.033589 C = 9142.219796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.601 5.601 3 C 0.121 3.879 4 C 0.125 3.875 5 H 0.058 0.942 6 C -0.126 4.126 7 C 0.140 3.860 8 N -0.628 5.628 9 C -0.173 4.173 10 H 0.086 0.914 11 C -0.084 4.084 12 N -0.962 5.962 13 Si 0.953 3.047 14 H -0.274 1.274 15 H -0.296 1.296 16 H -0.298 1.298 17 C 0.581 3.419 18 O -0.557 6.557 19 C -0.062 4.062 20 C 0.016 3.984 21 N -0.404 5.404 22 C 0.101 3.899 23 C -0.158 4.158 24 C -0.101 4.101 25 C -0.121 4.121 26 C -0.090 4.090 27 C -0.127 4.127 28 C 0.205 3.795 29 N -0.466 5.466 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.017 0.983 38 H 0.043 0.957 39 H 0.238 0.762 40 H 0.174 0.826 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.159 0.841 44 H 0.169 0.831 45 H 0.162 0.838 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.726 -15.763 9.997 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C -0.002 4.002 4 C 0.019 3.981 5 H 0.075 0.925 6 C -0.164 4.164 7 C 0.015 3.985 8 N -0.354 5.354 9 C -0.302 4.302 10 H 0.103 0.897 11 C -0.274 4.274 12 N -0.615 5.615 13 Si 0.785 3.215 14 H -0.199 1.199 15 H -0.223 1.223 16 H -0.225 1.225 17 C 0.369 3.631 18 O -0.435 6.435 19 C -0.188 4.188 20 C -0.121 4.121 21 N -0.082 5.082 22 C 0.010 3.990 23 C -0.177 4.177 24 C -0.119 4.119 25 C -0.139 4.139 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.077 4.077 29 N -0.184 5.184 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.191 0.809 41 H 0.131 0.869 42 H 0.164 0.836 43 H 0.176 0.824 44 H 0.187 0.813 45 H 0.179 0.821 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -18.483 -15.391 10.039 26.063 hybrid contribution 1.866 -1.207 -0.734 2.341 sum -16.617 -16.598 9.304 25.263 Atomic orbital electron populations 1.22232 0.76894 1.04216 1.02854 1.47594 1.08509 1.04923 1.72188 1.21794 0.97082 0.84388 0.96950 1.22889 0.92609 0.90988 0.91648 0.92504 1.23513 0.98700 0.96243 0.97967 1.22293 0.98552 0.84111 0.93586 1.46430 1.37837 1.03169 1.47962 1.19651 1.05061 0.83847 1.21672 0.89677 1.25359 0.99172 1.00018 1.02868 1.70003 1.21182 1.30455 1.39887 0.85301 0.77775 0.82112 0.76335 1.19869 1.22337 1.22548 1.17228 0.85853 0.83301 0.76730 1.90860 1.14651 1.87272 1.50719 1.20550 0.91241 0.93202 1.13838 1.22590 0.94967 0.89051 1.05454 1.43115 1.07280 1.05796 1.51962 1.18231 0.96662 0.79415 1.04673 1.21139 0.95664 0.97115 1.03816 1.21336 1.01040 0.91692 0.97842 1.21703 0.91927 1.01820 0.98472 1.21507 0.99336 0.93356 0.96611 1.21224 0.96927 0.94573 1.01930 1.26369 0.93072 0.86149 1.02094 1.70700 1.11494 1.16881 1.19374 0.91973 0.90438 0.88671 0.86920 0.92524 0.88635 0.90487 0.96522 0.93892 0.95254 0.80879 0.86858 0.83578 0.82376 0.81342 0.82094 0.71998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 9.69 127.77 1.24 3.53 16 2 N -0.60 -22.96 2.88 -850.80 -2.45 -25.41 16 3 C 0.12 4.59 5.36 86.38 0.46 5.06 16 4 C 0.13 5.22 4.53 45.09 0.20 5.42 16 5 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 6 C -0.13 -4.79 7.86 31.26 0.25 -4.54 16 7 C 0.14 7.14 7.70 86.48 0.67 7.80 16 8 N -0.63 -34.71 3.57 -694.13 -2.48 -37.18 16 9 C -0.17 -10.73 9.12 84.03 0.77 -9.96 16 10 H 0.09 5.30 4.23 -2.91 -0.01 5.29 16 11 C -0.08 -5.39 5.50 84.86 0.47 -4.92 16 12 N -0.96 -64.03 11.28 21.65 0.24 -63.79 16 13 Si 0.95 52.67 29.55 68.60 2.03 54.70 16 14 H -0.27 -14.52 7.11 99.48 0.71 -13.81 16 15 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 16 H -0.30 -16.47 7.11 99.48 0.71 -15.76 16 17 C 0.58 25.88 5.77 86.63 0.50 26.38 16 18 O -0.56 -29.76 13.74 -4.11 -0.06 -29.81 16 19 C -0.06 -2.34 6.67 40.50 0.27 -2.07 16 20 C 0.02 0.55 10.58 83.61 0.88 1.44 16 21 N -0.40 -10.51 2.97 -349.77 -1.04 -11.55 16 22 C 0.10 2.14 6.63 38.08 0.25 2.39 16 23 C -0.16 -3.45 9.46 22.38 0.21 -3.24 16 24 C -0.10 -1.57 10.04 22.25 0.22 -1.35 16 25 C -0.12 -1.28 10.04 22.29 0.22 -1.06 16 26 C -0.09 -0.83 10.04 22.25 0.22 -0.61 16 27 C -0.13 -1.64 9.46 22.38 0.21 -1.43 16 28 C 0.21 4.53 11.88 180.02 2.14 6.67 16 29 N -0.47 -13.89 7.74 -188.63 -1.46 -15.35 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.87 8.03 -2.39 -0.02 1.86 16 32 H 0.10 2.91 5.18 -2.39 -0.01 2.89 16 33 H 0.11 3.16 8.12 -2.39 -0.02 3.14 16 34 H 0.06 2.58 7.17 -2.39 -0.02 2.56 16 35 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 2.49 6.87 -2.39 -0.02 2.47 16 39 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.17 6.39 7.11 -2.91 -0.02 6.37 16 41 H 0.11 2.83 6.78 -2.91 -0.02 2.81 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 45 H 0.16 1.05 6.74 -2.91 -0.02 1.03 16 46 H 0.26 2.54 7.03 -2.91 -0.02 2.52 16 Total: -1.00 -89.92 373.78 4.99 -84.94 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.01 Total: 13.97 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 9.19 Total: 29.50 kcal Atomic # 7 Polarization: -146.11 SS G_CDS: -7.18 Total: -153.29 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 2.03 Total: 54.70 kcal Total: -89.92 4.99 -84.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085609575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.126 kcal (2) G-P(sol) polarization free energy of solvation -89.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds