Wall clock time and date at job start Sat Apr 11 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00108 * 2 1 4 4 C 1.52998 * 109.47065 * 264.35426 * 3 2 1 5 5 H 1.09003 * 112.96782 * 307.79260 * 4 3 2 6 6 C 1.53951 * 113.77066 * 176.11106 * 4 3 2 7 7 C 1.53943 * 86.28938 * 222.09329 * 6 4 3 8 8 N 1.47581 * 86.24283 * 23.54804 * 7 6 4 9 9 C 1.36943 * 134.49191 * 155.42570 * 8 7 6 10 10 H 1.07991 * 119.99980 * 183.89590 * 9 8 7 11 11 C 1.38817 * 119.99736 * 3.88827 * 9 8 7 12 12 N 1.31613 * 120.00383 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99531 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47359 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47072 * 120.00455 * 13 11 9 16 16 H 1.48498 * 109.46973 * 240.00475 * 13 11 9 17 17 C 1.34782 * 119.99843 * 179.97438 * 2 1 3 18 18 O 1.21680 * 119.99751 * 184.80613 * 17 2 1 19 19 C 1.46700 * 119.99826 * 4.81309 * 17 2 1 20 20 C 1.36708 * 126.85568 * 1.68098 * 19 17 2 21 21 N 1.33325 * 107.83443 * 180.02562 * 20 19 17 22 22 C 1.30865 * 109.74238 * 0.02562 * 21 20 19 23 23 N 1.34742 * 109.13555 * 359.72765 * 22 21 20 24 24 C 1.40120 * 126.50290 * 180.27236 * 23 22 21 25 25 C 1.38852 * 120.06301 * 123.50781 * 24 23 22 26 26 C 1.38117 * 119.92349 * 179.79167 * 25 24 23 27 27 C 1.38282 * 120.07244 * 0.48546 * 26 25 24 28 28 C 1.38277 * 120.13269 * 359.74244 * 27 26 25 29 29 C 1.38111 * 120.07074 * 0.02779 * 28 27 26 30 30 H 1.09003 * 109.46874 * 354.79659 * 1 2 3 31 31 H 1.08994 * 109.47147 * 114.79512 * 1 2 3 32 32 H 1.09006 * 109.47159 * 234.79789 * 1 2 3 33 33 H 1.08998 * 109.47146 * 144.35071 * 3 2 1 34 34 H 1.09001 * 109.47249 * 24.35457 * 3 2 1 35 35 H 1.08995 * 113.74395 * 107.74309 * 6 4 3 36 36 H 1.09005 * 113.83471 * 336.45073 * 6 4 3 37 37 H 1.09003 * 113.76925 * 137.91027 * 7 6 4 38 38 H 1.08998 * 113.76981 * 269.19117 * 7 6 4 39 39 H 0.97002 * 120.00385 * 179.97438 * 12 11 9 40 40 H 1.07997 * 126.08055 * 0.04364 * 20 19 17 41 41 H 1.08003 * 125.43236 * 180.02562 * 22 21 20 42 42 H 1.07988 * 120.03483 * 0.02562 * 25 24 23 43 43 H 1.07999 * 119.96147 * 180.20838 * 26 25 24 44 44 H 1.08004 * 119.93324 * 179.72740 * 27 26 25 45 45 H 1.08009 * 119.96333 * 180.02562 * 28 27 26 46 46 H 1.08008 * 120.03598 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5754 1.6394 -1.4355 5 1 3.0915 0.8356 -1.9605 6 6 3.2691 3.0080 -1.5608 7 6 2.3893 3.2280 -2.8048 8 7 1.4683 2.2410 -2.2082 9 6 0.1277 1.9868 -2.3242 10 1 -0.3314 1.2220 -1.7156 11 6 -0.6410 2.7123 -3.2241 12 7 -0.0813 3.6442 -3.9661 13 14 -2.4698 2.3659 -3.3817 14 1 -2.8506 1.2798 -2.4434 15 1 -3.2364 3.5946 -3.0533 16 1 -2.7763 1.9483 -4.7734 17 6 2.1389 -1.1673 0.0005 18 8 3.3525 -1.1691 0.0888 19 6 1.4092 -2.4355 -0.1055 20 6 0.0585 -2.5953 -0.2429 21 7 -0.1940 -3.9031 -0.3024 22 6 0.9257 -4.5741 -0.2093 23 7 1.9511 -3.7081 -0.0910 24 6 3.3085 -4.0348 0.0274 25 6 4.2281 -3.5261 -0.8802 26 6 5.5660 -3.8465 -0.7582 27 6 5.9887 -4.6809 0.2603 28 6 5.0746 -5.1927 1.1628 29 6 3.7360 -4.8723 1.0490 30 1 -0.3633 1.0235 0.0932 31 1 -0.3633 -0.4310 -0.9329 32 1 -0.3634 -0.5924 0.8398 33 1 3.1024 1.1658 0.5989 34 1 1.5684 2.0515 0.4238 35 1 4.3341 2.9416 -1.7827 36 1 3.0478 3.6908 -0.7404 37 1 1.9714 4.2323 -2.8754 38 1 2.8504 2.8930 -3.7338 39 1 -0.6184 4.1509 -4.5951 40 1 -0.6738 -1.8032 -0.2943 41 1 1.0141 -5.6504 -0.2293 42 1 3.8980 -2.8778 -1.6782 43 1 6.2823 -3.4486 -1.4618 44 1 7.0349 -4.9335 0.3509 45 1 5.4078 -5.8438 1.9575 46 1 3.0224 -5.2727 1.7540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:49 Heat of formation + Delta-G solvation = 148.866811 kcal Electronic energy + Delta-G solvation = -30047.043962 eV Core-core repulsion = 26134.305629 eV Total energy + Delta-G solvation = -3912.738333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52392 -39.42466 -39.16226 -37.66176 -35.35396 -34.02945 -32.27155 -31.29436 -30.58276 -29.57939 -28.26296 -27.53590 -26.60600 -23.77624 -23.31219 -23.07201 -23.03092 -21.54213 -21.04463 -19.60134 -19.05043 -17.92420 -16.89597 -16.51060 -16.43619 -16.06898 -15.81253 -15.17937 -15.05818 -14.83846 -14.39479 -14.03771 -13.96985 -13.77661 -13.69906 -13.59072 -13.23948 -12.97373 -12.85626 -12.66787 -11.96403 -11.70066 -11.49761 -11.39797 -11.27557 -11.09452 -10.94159 -10.71897 -10.63813 -10.45863 -10.18824 -10.02101 -9.67044 -9.60480 -9.28841 -9.17174 -8.87531 -8.77923 -8.62427 -8.24485 -6.83830 -5.75183 -3.05975 0.74878 1.14065 1.47918 2.37817 2.83815 3.33921 3.38109 3.41090 3.45969 3.46159 3.50299 4.44299 4.47790 4.55028 4.61410 4.67206 4.86093 4.98595 5.12603 5.15578 5.19406 5.35647 5.37524 5.48962 5.51331 5.64739 5.67448 5.69037 5.78151 5.88740 5.96031 6.06477 6.08648 6.11537 6.21653 6.24544 6.25523 6.42521 6.46096 6.59060 6.61865 6.71783 6.94033 7.12716 7.28122 7.43637 7.59256 7.64779 7.79981 8.00383 8.37161 9.05617 9.73687 10.65860 11.42697 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.003665 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.461929 B = 7638.477508 C = 8940.659226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.583 5.583 3 C 0.123 3.877 4 C 0.127 3.873 5 H 0.045 0.955 6 C -0.159 4.159 7 C 0.163 3.837 8 N -0.602 5.602 9 C -0.228 4.228 10 H 0.091 0.909 11 C -0.009 4.009 12 N -0.919 5.919 13 Si 0.901 3.099 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.586 3.414 18 O -0.544 6.544 19 C -0.071 4.071 20 C 0.020 3.980 21 N -0.492 5.492 22 C 0.208 3.792 23 N -0.386 5.386 24 C 0.112 3.888 25 C -0.063 4.063 26 C -0.107 4.107 27 C -0.109 4.109 28 C -0.115 4.115 29 C -0.111 4.111 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.251 0.749 40 H 0.203 0.797 41 H 0.211 0.789 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 -15.368 10.796 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.313 5.313 3 C 0.000 4.000 4 C 0.019 3.981 5 H 0.062 0.938 6 C -0.198 4.198 7 C 0.037 3.963 8 N -0.328 5.328 9 C -0.356 4.356 10 H 0.109 0.891 11 C -0.206 4.206 12 N -0.567 5.567 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.373 3.627 18 O -0.424 6.424 19 C -0.186 4.186 20 C -0.131 4.131 21 N -0.210 5.210 22 C -0.073 4.073 23 N -0.065 5.065 24 C 0.022 3.978 25 C -0.083 4.083 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.219 0.781 41 H 0.227 0.773 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.419 -15.661 10.641 20.722 hybrid contribution -0.409 0.124 -0.405 0.589 sum 8.010 -15.537 10.236 20.257 Atomic orbital electron populations 1.22585 0.79542 1.04739 1.00900 1.47354 1.07203 1.05363 1.71407 1.22000 0.96451 0.82922 0.98610 1.22632 0.89661 0.94483 0.91285 0.93795 1.23770 0.97657 0.97202 1.01163 1.22100 0.87070 0.95540 0.91544 1.46208 1.01961 1.34689 1.49945 1.19442 0.81512 1.16751 1.17880 0.89114 1.24805 0.97882 0.99290 0.98580 1.69837 1.34321 1.25272 1.27225 0.86215 0.85444 0.77496 0.77662 1.20254 1.21807 1.21875 1.16700 0.86345 0.82168 0.77445 1.90801 1.13000 1.87160 1.51411 1.20996 0.94272 0.85946 1.17349 1.23952 0.93357 0.94504 1.01321 1.70246 1.25992 1.04831 1.19918 1.25259 0.81261 0.97698 1.03049 1.42684 1.05744 1.05926 1.52114 1.17624 0.81231 1.01168 0.97769 1.21067 0.92880 0.96831 0.97489 1.21060 0.94983 0.97811 0.98719 1.21274 0.99859 0.96887 0.94727 1.20961 0.92164 1.00612 0.99607 1.21024 0.96862 0.98745 0.96384 0.88559 0.90712 0.92107 0.90532 0.89571 0.93012 0.90702 0.91364 0.95807 0.93836 0.78124 0.77258 0.85448 0.85125 0.85484 0.85236 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 6.63 59.85 0.40 1.38 16 2 N -0.58 -9.97 2.89 -183.12 -0.53 -10.50 16 3 C 0.12 2.16 5.28 -4.04 -0.02 2.14 16 4 C 0.13 2.59 4.51 -66.74 -0.30 2.29 16 5 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.16 -2.98 7.86 -25.79 -0.20 -3.19 16 7 C 0.16 3.81 7.41 -2.98 -0.02 3.79 16 8 N -0.60 -14.66 3.58 -169.73 -0.61 -15.27 16 9 C -0.23 -5.92 10.21 -15.05 -0.15 -6.07 16 10 H 0.09 2.14 3.46 -52.49 -0.18 1.95 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -26.83 11.48 55.49 0.64 -26.20 16 13 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C 0.59 10.40 7.58 -12.84 -0.10 10.30 16 18 O -0.54 -10.53 13.63 5.21 0.07 -10.46 16 19 C -0.07 -1.15 6.72 -82.07 -0.55 -1.71 16 20 C 0.02 0.31 9.86 -17.46 -0.17 0.14 16 21 N -0.49 -7.36 11.20 -14.36 -0.16 -7.52 16 22 C 0.21 2.63 12.31 -90.34 -1.11 1.52 16 23 N -0.39 -5.50 2.85 -58.64 -0.17 -5.67 16 24 C 0.11 1.48 5.33 -83.62 -0.45 1.03 16 25 C -0.06 -0.86 7.80 -39.40 -0.31 -1.17 16 26 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16 27 C -0.11 -0.99 10.04 -39.55 -0.40 -1.38 16 28 C -0.11 -1.01 10.04 -39.61 -0.40 -1.41 16 29 C -0.11 -1.16 9.78 -39.40 -0.39 -1.55 16 30 H 0.10 1.52 6.69 -51.93 -0.35 1.17 16 31 H 0.07 1.21 5.49 -51.93 -0.29 0.93 16 32 H 0.06 0.76 6.65 -51.93 -0.35 0.41 16 33 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 34 H 0.09 1.48 7.77 -51.93 -0.40 1.07 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.32 8.10 -51.93 -0.42 0.89 16 37 H 0.07 1.74 7.34 -51.93 -0.38 1.36 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.20 2.80 4.09 -52.49 -0.21 2.58 16 41 H 0.21 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.13 1.96 7.82 -52.49 -0.41 1.55 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -33.45 371.38 -10.74 -44.19 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.90 Total: 5.28 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -4.66 Total: 4.20 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.83 Total: -65.15 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.45 -10.74 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.057 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds