Wall clock time and date at job start Sat Apr 11 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00108 * 2 1 4 4 C 1.52998 * 109.47065 * 264.35426 * 3 2 1 5 5 H 1.09003 * 112.96782 * 307.79260 * 4 3 2 6 6 C 1.53951 * 113.77066 * 176.11106 * 4 3 2 7 7 C 1.53943 * 86.28938 * 222.09329 * 6 4 3 8 8 N 1.47581 * 86.24283 * 23.54804 * 7 6 4 9 9 C 1.36943 * 134.49191 * 155.42570 * 8 7 6 10 10 H 1.07991 * 119.99980 * 183.89590 * 9 8 7 11 11 C 1.38817 * 119.99736 * 3.88827 * 9 8 7 12 12 N 1.31613 * 120.00383 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99531 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47359 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47072 * 120.00455 * 13 11 9 16 16 H 1.48498 * 109.46973 * 240.00475 * 13 11 9 17 17 C 1.34782 * 119.99843 * 179.97438 * 2 1 3 18 18 O 1.21680 * 119.99751 * 184.80613 * 17 2 1 19 19 C 1.46700 * 119.99826 * 4.81309 * 17 2 1 20 20 C 1.36708 * 126.85568 * 1.68098 * 19 17 2 21 21 N 1.33325 * 107.83443 * 180.02562 * 20 19 17 22 22 C 1.30865 * 109.74238 * 0.02562 * 21 20 19 23 23 N 1.34742 * 109.13555 * 359.72765 * 22 21 20 24 24 C 1.40120 * 126.50290 * 180.27236 * 23 22 21 25 25 C 1.38852 * 120.06301 * 123.50781 * 24 23 22 26 26 C 1.38117 * 119.92349 * 179.79167 * 25 24 23 27 27 C 1.38282 * 120.07244 * 0.48546 * 26 25 24 28 28 C 1.38277 * 120.13269 * 359.74244 * 27 26 25 29 29 C 1.38111 * 120.07074 * 0.02779 * 28 27 26 30 30 H 1.09003 * 109.46874 * 354.79659 * 1 2 3 31 31 H 1.08994 * 109.47147 * 114.79512 * 1 2 3 32 32 H 1.09006 * 109.47159 * 234.79789 * 1 2 3 33 33 H 1.08998 * 109.47146 * 144.35071 * 3 2 1 34 34 H 1.09001 * 109.47249 * 24.35457 * 3 2 1 35 35 H 1.08995 * 113.74395 * 107.74309 * 6 4 3 36 36 H 1.09005 * 113.83471 * 336.45073 * 6 4 3 37 37 H 1.09003 * 113.76925 * 137.91027 * 7 6 4 38 38 H 1.08998 * 113.76981 * 269.19117 * 7 6 4 39 39 H 0.97002 * 120.00385 * 179.97438 * 12 11 9 40 40 H 1.07997 * 126.08055 * 0.04364 * 20 19 17 41 41 H 1.08003 * 125.43236 * 180.02562 * 22 21 20 42 42 H 1.07988 * 120.03483 * 0.02562 * 25 24 23 43 43 H 1.07999 * 119.96147 * 180.20838 * 26 25 24 44 44 H 1.08004 * 119.93324 * 179.72740 * 27 26 25 45 45 H 1.08009 * 119.96333 * 180.02562 * 28 27 26 46 46 H 1.08008 * 120.03598 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5754 1.6394 -1.4355 5 1 3.0915 0.8356 -1.9605 6 6 3.2691 3.0080 -1.5608 7 6 2.3893 3.2280 -2.8048 8 7 1.4683 2.2410 -2.2082 9 6 0.1277 1.9868 -2.3242 10 1 -0.3314 1.2220 -1.7156 11 6 -0.6410 2.7123 -3.2241 12 7 -0.0813 3.6442 -3.9661 13 14 -2.4698 2.3659 -3.3817 14 1 -2.8506 1.2798 -2.4434 15 1 -3.2364 3.5946 -3.0533 16 1 -2.7763 1.9483 -4.7734 17 6 2.1389 -1.1673 0.0005 18 8 3.3525 -1.1691 0.0888 19 6 1.4092 -2.4355 -0.1055 20 6 0.0585 -2.5953 -0.2429 21 7 -0.1940 -3.9031 -0.3024 22 6 0.9257 -4.5741 -0.2093 23 7 1.9511 -3.7081 -0.0910 24 6 3.3085 -4.0348 0.0274 25 6 4.2281 -3.5261 -0.8802 26 6 5.5660 -3.8465 -0.7582 27 6 5.9887 -4.6809 0.2603 28 6 5.0746 -5.1927 1.1628 29 6 3.7360 -4.8723 1.0490 30 1 -0.3633 1.0235 0.0932 31 1 -0.3633 -0.4310 -0.9329 32 1 -0.3634 -0.5924 0.8398 33 1 3.1024 1.1658 0.5989 34 1 1.5684 2.0515 0.4238 35 1 4.3341 2.9416 -1.7827 36 1 3.0478 3.6908 -0.7404 37 1 1.9714 4.2323 -2.8754 38 1 2.8504 2.8930 -3.7338 39 1 -0.6184 4.1509 -4.5951 40 1 -0.6738 -1.8032 -0.2943 41 1 1.0141 -5.6504 -0.2293 42 1 3.8980 -2.8778 -1.6782 43 1 6.2823 -3.4486 -1.4618 44 1 7.0349 -4.9335 0.3509 45 1 5.4078 -5.8438 1.9575 46 1 3.0224 -5.2727 1.7540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:47 Heat of formation + Delta-G solvation = 130.484143 kcal Electronic energy + Delta-G solvation = -30047.841095 eV Core-core repulsion = 26134.305629 eV Total energy + Delta-G solvation = -3913.535465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.59451 -40.81138 -40.01497 -39.33544 -36.68088 -35.04769 -34.25978 -32.17128 -31.77594 -30.52025 -29.97017 -29.08970 -27.94468 -25.24145 -24.96037 -24.26012 -23.92889 -22.74240 -22.17744 -20.92619 -20.59374 -19.09598 -18.64289 -17.76673 -17.33850 -17.18221 -17.10118 -16.85175 -16.32239 -16.00036 -15.79851 -15.50293 -15.05856 -14.95051 -14.88916 -14.67294 -14.60580 -14.47430 -14.01205 -13.80802 -13.44528 -13.11814 -12.94383 -12.83453 -12.64894 -12.55943 -12.45143 -12.29846 -12.14959 -11.84984 -11.61282 -11.45499 -11.21740 -11.13901 -10.91920 -10.80411 -10.00259 -9.90982 -9.64013 -9.61821 -8.84216 -7.82243 -5.13792 -0.17821 0.33147 0.44193 1.32994 1.47847 1.49676 1.58033 1.73919 2.10963 2.21917 2.51558 2.67880 3.33806 3.36753 3.47247 3.59088 3.82767 3.88244 3.94037 3.95944 4.16585 4.17343 4.20626 4.26746 4.33691 4.39865 4.42366 4.53360 4.56155 4.68233 4.69677 4.78594 4.86266 4.88829 4.96703 5.00236 5.05127 5.27178 5.34739 5.35914 5.38763 5.47263 5.49346 5.64234 5.70971 5.79835 5.99193 6.17351 6.30048 6.70761 6.99251 7.04516 7.71000 8.66922 9.36550 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.003665 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.461929 B = 7638.477508 C = 8940.659226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.588 5.588 3 C 0.132 3.868 4 C 0.130 3.870 5 H 0.023 0.977 6 C -0.130 4.130 7 C 0.154 3.846 8 N -0.622 5.622 9 C -0.222 4.222 10 H 0.113 0.887 11 C -0.075 4.075 12 N -0.960 5.960 13 Si 0.960 3.040 14 H -0.248 1.248 15 H -0.296 1.296 16 H -0.306 1.306 17 C 0.582 3.418 18 O -0.567 6.567 19 C -0.101 4.101 20 C 0.022 3.978 21 N -0.517 5.517 22 C 0.225 3.775 23 N -0.388 5.388 24 C 0.087 3.913 25 C -0.090 4.090 26 C -0.118 4.118 27 C -0.103 4.103 28 C -0.107 4.107 29 C -0.111 4.111 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.004 0.996 39 H 0.242 0.758 40 H 0.210 0.790 41 H 0.252 0.748 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -18.068 13.570 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.318 5.318 3 C 0.009 3.991 4 C 0.023 3.977 5 H 0.040 0.960 6 C -0.169 4.169 7 C 0.028 3.972 8 N -0.348 5.348 9 C -0.350 4.350 10 H 0.130 0.870 11 C -0.267 4.267 12 N -0.610 5.610 13 Si 0.789 3.211 14 H -0.172 1.172 15 H -0.223 1.223 16 H -0.234 1.234 17 C 0.371 3.629 18 O -0.448 6.448 19 C -0.216 4.216 20 C -0.130 4.130 21 N -0.235 5.235 22 C -0.056 4.056 23 N -0.065 5.065 24 C -0.003 4.003 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.120 4.120 28 C -0.125 4.125 29 C -0.130 4.130 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.051 0.949 40 H 0.226 0.774 41 H 0.268 0.732 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.178 0.822 45 H 0.184 0.816 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.114 -18.393 13.455 24.544 hybrid contribution -0.485 0.835 -1.262 1.589 sum 8.629 -17.558 12.192 23.052 Atomic orbital electron populations 1.22628 0.78498 1.04884 1.01635 1.47421 1.07919 1.05079 1.71380 1.21815 0.97294 0.83557 0.96402 1.22675 0.88216 0.94596 0.92213 0.95955 1.23564 0.98332 0.96062 0.98911 1.22045 0.88229 0.94002 0.92914 1.46597 1.02370 1.35446 1.50406 1.20072 0.82521 1.15751 1.16685 0.86950 1.25608 1.01937 0.99933 0.99260 1.70039 1.35468 1.26981 1.28560 0.85258 0.80821 0.77806 0.77201 1.17163 1.22345 1.23413 1.16963 0.86222 0.82841 0.76864 1.90773 1.13962 1.87583 1.52489 1.20883 0.94643 0.86286 1.19758 1.24121 0.93177 0.95140 1.00531 1.70274 1.27138 1.04703 1.21337 1.26096 0.80278 0.99106 1.00134 1.42825 1.06583 1.05415 1.51697 1.17882 0.80632 1.02712 0.99053 1.20953 0.94466 0.97894 0.97659 1.21283 0.94061 0.98415 0.99855 1.21679 1.01665 0.95290 0.93398 1.21436 0.91253 0.99937 0.99872 1.21305 0.98184 0.97877 0.95629 0.88994 0.91818 0.89066 0.89417 0.88733 0.90328 0.88745 0.94014 0.97817 0.94896 0.77355 0.73207 0.88936 0.84207 0.82206 0.81603 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 6.63 127.77 0.85 2.76 16 2 N -0.59 -19.76 2.89 -851.49 -2.46 -22.22 16 3 C 0.13 4.52 5.28 86.38 0.46 4.98 16 4 C 0.13 5.28 4.51 45.05 0.20 5.48 16 5 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 6 C -0.13 -4.78 7.86 31.25 0.25 -4.53 16 7 C 0.15 7.42 7.41 86.48 0.64 8.06 16 8 N -0.62 -30.76 3.58 -690.89 -2.48 -33.24 16 9 C -0.22 -11.60 10.21 84.03 0.86 -10.74 16 10 H 0.11 5.22 3.46 -2.92 -0.01 5.21 16 11 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 12 N -0.96 -58.25 11.48 21.65 0.25 -58.00 16 13 Si 0.96 44.50 29.55 68.60 2.03 46.53 16 14 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 17 C 0.58 20.69 7.58 86.45 0.66 21.34 16 18 O -0.57 -22.21 13.63 -4.28 -0.06 -22.26 16 19 C -0.10 -3.25 6.72 39.97 0.27 -2.98 16 20 C 0.02 0.67 9.86 84.11 0.83 1.50 16 21 N -0.52 -14.67 11.20 -199.33 -2.23 -16.90 16 22 C 0.22 5.25 12.31 180.25 2.22 7.47 16 23 N -0.39 -10.71 2.85 -339.42 -0.97 -11.68 16 24 C 0.09 2.21 5.33 38.11 0.20 2.41 16 25 C -0.09 -2.49 7.80 22.39 0.17 -2.31 16 26 C -0.12 -2.47 10.04 22.25 0.22 -2.24 16 27 C -0.10 -1.53 10.04 22.29 0.22 -1.31 16 28 C -0.11 -1.47 10.04 22.25 0.22 -1.25 16 29 C -0.11 -2.02 9.78 22.39 0.22 -1.81 16 30 H 0.09 2.76 6.69 -2.39 -0.02 2.75 16 31 H 0.06 2.01 5.49 -2.39 -0.01 2.00 16 32 H 0.09 2.11 6.65 -2.38 -0.02 2.09 16 33 H 0.09 2.83 7.53 -2.39 -0.02 2.81 16 34 H 0.09 3.09 7.77 -2.39 -0.02 3.07 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 3.13 8.10 -2.38 -0.02 3.11 16 37 H 0.04 2.22 7.34 -2.39 -0.02 2.20 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.21 5.58 4.09 -2.91 -0.01 5.57 16 41 H 0.25 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.09 3.10 7.82 -2.92 -0.02 3.08 16 43 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 46 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -76.04 371.38 4.05 -71.99 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 1.01 Total: 22.69 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 8.96 Total: 23.10 kcal Atomic # 7 Polarization: -134.16 SS G_CDS: -7.88 Total: -142.04 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.04 4.05 -71.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.471 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds