Wall clock time and date at job start Sat Apr 11 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99619 * 2 1 4 4 C 1.52996 * 109.47385 * 264.75432 * 3 2 1 5 5 H 1.09000 * 112.96431 * 294.26978 * 4 3 2 6 6 C 1.53948 * 113.76561 * 65.94405 * 4 3 2 7 7 C 1.53949 * 86.29172 * 137.91030 * 6 4 3 8 8 N 1.47577 * 113.77143 * 162.58620 * 4 3 2 9 9 C 1.36938 * 134.49170 * 41.07086 * 8 4 3 10 10 H 1.07992 * 120.00148 * 4.92040 * 9 8 4 11 11 C 1.38815 * 119.99726 * 184.92214 * 9 8 4 12 12 N 1.31620 * 120.00460 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47150 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46914 * 120.00161 * 13 11 9 16 16 H 1.48495 * 109.47378 * 240.00123 * 13 11 9 17 17 C 1.34779 * 120.00041 * 179.97438 * 2 1 3 18 18 O 1.21687 * 119.99872 * 180.67897 * 17 2 1 19 19 C 1.46698 * 119.99884 * 0.68109 * 17 2 1 20 20 C 1.36710 * 126.85554 * 347.04229 * 19 17 2 21 21 N 1.33329 * 107.83715 * 180.02562 * 20 19 17 22 22 C 1.30868 * 109.73883 * 0.02562 * 21 20 19 23 23 N 1.34740 * 109.13732 * 359.97438 * 22 21 20 24 24 C 1.40113 * 126.50272 * 180.02562 * 23 22 21 25 25 C 1.38857 * 120.07018 * 128.28548 * 24 23 22 26 26 C 1.38112 * 119.93508 * 179.74434 * 25 24 23 27 27 C 1.38288 * 120.06268 * 0.55808 * 26 25 24 28 28 C 1.38277 * 120.13932 * 359.69304 * 27 26 25 29 29 C 1.38116 * 120.06814 * 0.02640 * 28 27 26 30 30 H 1.08992 * 109.47361 * 264.17303 * 1 2 3 31 31 H 1.08996 * 109.47146 * 24.17695 * 1 2 3 32 32 H 1.09004 * 109.46830 * 144.17204 * 1 2 3 33 33 H 1.09001 * 109.47413 * 24.75865 * 3 2 1 34 34 H 1.09006 * 109.46729 * 144.76016 * 3 2 1 35 35 H 1.09006 * 113.73804 * 252.25255 * 6 4 3 36 36 H 1.08992 * 113.74165 * 23.45406 * 6 4 3 37 37 H 1.08998 * 113.77109 * 90.68900 * 7 6 4 38 38 H 1.08998 * 113.76874 * 221.97981 * 7 6 4 39 39 H 0.96995 * 120.00239 * 179.97438 * 12 11 9 40 40 H 1.07994 * 126.08127 * 359.76201 * 20 19 17 41 41 H 1.07996 * 125.43262 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.02972 * 0.02562 * 25 24 23 43 43 H 1.07989 * 119.97258 * 180.25228 * 26 25 24 44 44 H 1.08005 * 119.92843 * 179.72367 * 27 26 25 45 45 H 1.08000 * 119.97020 * 180.02562 * 28 27 26 46 46 H 1.08002 * 120.03598 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5667 1.6446 -1.4364 5 1 3.2748 0.9504 -1.8890 6 6 1.3513 1.9598 -2.3271 7 6 2.1832 3.1337 -2.8748 8 7 2.9350 3.0638 -1.6040 9 6 3.6749 3.9558 -0.8746 10 1 4.2012 3.6259 0.0088 11 6 3.7484 5.2842 -1.2708 12 7 3.1067 5.6865 -2.3472 13 14 4.7572 6.5012 -0.2754 14 1 5.3758 5.8031 0.8801 15 1 5.8233 7.0786 -1.1329 16 1 3.8749 7.5892 0.2175 17 6 2.1389 -1.1672 0.0005 18 8 3.3558 -1.1672 0.0130 19 6 1.4055 -2.4376 -0.0140 20 6 0.0699 -2.6160 0.2166 21 7 -0.1926 -3.9189 0.1098 22 6 0.9068 -4.5693 -0.1750 23 7 1.9276 -3.6942 -0.2628 24 6 3.2643 -3.9992 -0.5516 25 6 3.9304 -3.3189 -1.5624 26 6 5.2496 -3.6181 -1.8412 27 6 5.9036 -4.6021 -1.1226 28 6 5.2414 -5.2849 -0.1189 29 6 3.9239 -4.9863 0.1685 30 1 -0.3633 -0.1043 1.0223 31 1 -0.3633 0.9375 -0.4209 32 1 -0.3633 -0.8333 -0.6016 33 1 1.5709 2.0500 0.4304 34 1 3.1060 1.1637 0.5930 35 1 1.1387 1.1892 -3.0682 36 1 0.4671 2.2687 -1.7698 37 1 2.7797 2.8785 -3.7506 38 1 1.6136 4.0543 -3.0016 39 1 3.1578 6.6147 -2.6238 40 1 -0.6447 -1.8402 0.4485 41 1 0.9835 -5.6371 -0.3170 42 1 3.4188 -2.5534 -2.1269 43 1 5.7694 -3.0865 -2.6244 44 1 6.9339 -4.8373 -1.3454 45 1 5.7549 -6.0526 0.4409 46 1 3.4073 -5.5197 0.9527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:54 Heat of formation + Delta-G solvation = 146.646674 kcal Electronic energy + Delta-G solvation = -29597.136413 eV Core-core repulsion = 25684.301808 eV Total energy + Delta-G solvation = -3912.834605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70295 -39.54140 -39.23723 -37.71428 -35.50554 -34.16846 -32.18042 -31.37582 -30.71902 -29.66642 -28.09582 -27.82976 -26.71135 -23.88020 -23.37130 -23.19510 -23.03506 -21.62599 -21.19733 -19.73607 -19.03876 -18.03046 -16.92915 -16.56320 -16.43744 -16.20114 -15.92189 -15.37511 -15.16945 -14.71140 -14.55149 -14.15273 -14.09757 -14.04104 -13.74482 -13.52889 -13.46627 -13.05030 -12.91288 -12.38803 -12.26862 -11.97516 -11.70259 -11.52929 -11.43221 -11.01523 -10.83734 -10.77789 -10.67550 -10.44394 -10.37969 -9.87035 -9.78778 -9.70502 -9.56075 -9.22665 -8.95727 -8.76804 -8.73793 -8.38859 -6.85145 -5.74012 -3.07536 0.64904 1.09325 1.38859 2.23127 2.66966 3.14849 3.30327 3.39790 3.44858 3.46007 3.47980 4.31201 4.38496 4.48987 4.55021 4.61975 4.79793 4.83389 5.04142 5.08709 5.08945 5.20983 5.22170 5.34830 5.43451 5.46340 5.55369 5.60604 5.69318 5.71676 5.83970 5.95342 6.03601 6.12804 6.18244 6.21424 6.26279 6.26999 6.43097 6.51578 6.58743 6.70887 6.80365 6.98740 7.26601 7.42948 7.49625 7.61401 7.62568 8.01283 8.24351 9.06901 9.73434 10.62830 11.42141 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.003112 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.239915 B = 8994.108481 C =10197.906961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.590 5.590 3 C 0.122 3.878 4 C 0.132 3.868 5 H 0.046 0.954 6 C -0.158 4.158 7 C 0.155 3.845 8 N -0.601 5.601 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.581 3.419 18 O -0.532 6.532 19 C -0.070 4.070 20 C 0.017 3.983 21 N -0.493 5.493 22 C 0.210 3.790 23 N -0.382 5.382 24 C 0.111 3.889 25 C -0.071 4.071 26 C -0.103 4.103 27 C -0.109 4.109 28 C -0.112 4.112 29 C -0.112 4.112 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.200 0.800 41 H 0.212 0.788 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -23.056 2.845 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.322 5.322 3 C -0.001 4.001 4 C 0.024 3.976 5 H 0.063 0.937 6 C -0.196 4.196 7 C 0.030 3.970 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.368 3.632 18 O -0.409 6.409 19 C -0.185 4.185 20 C -0.134 4.134 21 N -0.210 5.210 22 C -0.071 4.071 23 N -0.060 5.060 24 C 0.021 3.979 25 C -0.090 4.090 26 C -0.122 4.122 27 C -0.127 4.127 28 C -0.130 4.130 29 C -0.131 4.131 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.216 0.784 41 H 0.228 0.772 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.744 -23.075 3.009 23.569 hybrid contribution 1.401 1.109 0.358 1.823 sum -2.343 -21.965 3.367 22.345 Atomic orbital electron populations 1.22546 0.79906 1.04602 1.01725 1.47472 1.06938 1.05641 1.72149 1.21862 0.96919 0.82011 0.99288 1.22504 0.93771 0.88594 0.92765 0.93683 1.23759 0.97459 0.99358 0.99022 1.22304 0.90711 0.95738 0.88205 1.46057 1.60375 1.04374 1.21968 1.19065 1.22378 0.88050 1.05358 0.90375 1.24762 1.00741 0.96806 0.98027 1.69827 1.46050 1.15698 1.25154 0.86089 0.79420 0.81348 0.79187 1.20450 1.21815 1.21705 1.16785 0.86541 0.82135 0.77739 1.90873 1.12756 1.86990 1.50274 1.21024 0.94914 0.86600 1.15947 1.23651 0.92910 0.94330 1.02532 1.70237 1.26165 1.05275 1.19307 1.25255 0.81571 0.97634 1.02668 1.42704 1.07066 1.06613 1.49589 1.17627 0.82296 0.99790 0.98176 1.21015 0.95247 0.97610 0.95115 1.21085 0.93674 0.97274 1.00130 1.21301 1.00156 0.95691 0.95557 1.20979 0.93655 1.00329 0.98071 1.20982 0.95270 0.97898 0.98986 0.92036 0.89810 0.89757 0.89391 0.90520 0.93490 0.90850 0.96019 0.90363 0.93784 0.78355 0.77159 0.85600 0.84964 0.85356 0.85127 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 8.48 59.85 0.51 1.09 16 2 N -0.59 -8.72 2.79 -183.12 -0.51 -9.23 16 3 C 0.12 2.20 5.24 -4.04 -0.02 2.18 16 4 C 0.13 2.72 4.54 -66.87 -0.30 2.42 16 5 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.16 -2.94 7.31 -25.79 -0.19 -3.13 16 7 C 0.16 3.68 7.65 -2.84 -0.02 3.65 16 8 N -0.60 -15.32 3.58 -169.73 -0.61 -15.93 16 9 C -0.22 -6.17 10.51 -15.06 -0.16 -6.33 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.22 11.32 55.49 0.63 -26.59 16 13 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 C 0.58 9.35 7.32 -12.84 -0.09 9.25 16 18 O -0.53 -10.25 13.95 5.20 0.07 -10.18 16 19 C -0.07 -0.96 6.58 -82.07 -0.54 -1.50 16 20 C 0.02 0.21 9.72 -17.45 -0.17 0.04 16 21 N -0.49 -5.98 11.20 -14.36 -0.16 -6.14 16 22 C 0.21 2.21 12.25 -90.34 -1.11 1.11 16 23 N -0.38 -4.78 2.87 -58.64 -0.17 -4.95 16 24 C 0.11 1.37 5.42 -83.62 -0.45 0.91 16 25 C -0.07 -0.91 7.78 -39.40 -0.31 -1.22 16 26 C -0.10 -1.13 10.04 -39.61 -0.40 -1.53 16 27 C -0.11 -0.99 10.04 -39.55 -0.40 -1.39 16 28 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 29 C -0.11 -1.11 9.71 -39.40 -0.38 -1.49 16 30 H 0.06 0.53 7.57 -51.93 -0.39 0.13 16 31 H 0.08 0.86 6.65 -51.93 -0.35 0.52 16 32 H 0.08 0.79 4.98 -51.93 -0.26 0.53 16 33 H 0.09 1.57 8.03 -51.93 -0.42 1.16 16 34 H 0.08 1.54 7.57 -51.93 -0.39 1.14 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.27 6.95 -51.93 -0.36 0.91 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 2.02 6.97 -51.93 -0.36 1.66 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.20 1.83 4.59 -52.49 -0.24 1.59 16 41 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.13 1.80 7.74 -52.49 -0.41 1.39 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -34.88 376.59 -10.73 -45.60 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.11 Total: 2.09 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -4.53 Total: 2.40 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.82 Total: -62.84 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.88 -10.73 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.250 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds