Wall clock time and date at job start Sat Apr 11 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99885 * 2 1 4 4 C 1.52997 * 109.47530 * 272.11330 * 3 2 1 5 5 H 1.08999 * 112.74257 * 317.01783 * 4 3 2 6 6 C 1.53497 * 113.46477 * 87.75393 * 4 3 2 7 7 C 1.53615 * 83.30584 * 140.83261 * 6 4 3 8 8 N 1.47061 * 113.46915 * 186.26456 * 4 3 2 9 9 C 1.36946 * 136.05524 * 38.14311 * 8 4 3 10 10 H 1.07990 * 120.00052 * 4.25643 * 9 8 4 11 11 C 1.38812 * 119.99633 * 184.26040 * 9 8 4 12 12 N 1.31616 * 120.00036 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47346 * 59.99714 * 13 11 9 15 15 H 1.48498 * 109.47494 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47233 * 300.00040 * 13 11 9 17 17 C 1.34776 * 120.00439 * 180.02562 * 2 1 3 18 18 O 1.21579 * 120.00568 * 184.64334 * 17 2 1 19 19 C 1.47670 * 119.99632 * 4.64363 * 17 2 1 20 20 C 1.39710 * 120.07771 * 329.21378 * 19 17 2 21 21 C 1.37716 * 119.91887 * 180.27719 * 20 19 17 22 22 C 1.39051 * 120.08164 * 0.02562 * 21 20 19 23 23 N 1.39834 * 119.92170 * 179.97438 * 22 21 20 24 24 C 1.35841 * 126.10279 * 0.02562 * 23 22 21 25 25 C 1.35284 * 107.61734 * 180.02562 * 24 23 22 26 26 C 1.39958 * 107.96624 * 0.02562 * 25 24 23 27 27 N 1.30828 * 108.36743 * 359.71487 * 26 25 24 28 28 C 1.39054 * 120.15829 * 359.97438 * 22 21 20 29 29 C 1.37719 * 120.07607 * 0.02562 * 28 22 21 30 30 H 1.08999 * 109.46908 * 274.85757 * 1 2 3 31 31 H 1.09000 * 109.47146 * 34.85581 * 1 2 3 32 32 H 1.09002 * 109.46917 * 154.86177 * 1 2 3 33 33 H 1.08995 * 109.46842 * 32.11890 * 3 2 1 34 34 H 1.09002 * 109.46863 * 152.11703 * 3 2 1 35 35 H 1.08999 * 114.21041 * 254.43772 * 6 4 3 36 36 H 1.09007 * 114.20598 * 27.26609 * 6 4 3 37 37 H 1.09001 * 113.50522 * 219.18827 * 7 6 4 38 38 H 1.08993 * 113.46939 * 88.76431 * 7 6 4 39 39 H 0.97010 * 119.99588 * 180.02562 * 12 11 9 40 40 H 1.07997 * 120.03776 * 0.25500 * 20 19 17 41 41 H 1.08006 * 119.96051 * 180.02562 * 21 20 19 42 42 H 1.08000 * 126.19219 * 0.02562 * 24 23 22 43 43 H 1.07993 * 126.02012 * 180.02562 * 25 24 23 44 44 H 1.08000 * 125.81623 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.96452 * 179.97438 * 28 22 21 46 46 H 1.07998 * 120.04119 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4064 1.7371 -1.4414 5 1 2.7026 0.9278 -2.1087 6 6 1.2457 2.5825 -1.9838 7 6 2.3769 3.3949 -2.6318 8 7 3.2602 2.9294 -1.5519 9 6 4.3838 3.3991 -0.9255 10 1 4.8802 2.7938 -0.1816 11 6 4.8845 4.6533 -1.2468 12 7 4.2796 5.3908 -2.1538 13 14 6.4166 5.2943 -0.3919 14 1 7.5527 4.3756 -0.6575 15 1 6.7433 6.6471 -0.9099 16 1 6.1725 5.3694 1.0710 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1689 0.0847 19 6 1.4042 -2.4439 -0.1046 20 6 0.1145 -2.5544 0.4210 21 6 -0.5655 -3.7483 0.3271 22 6 0.0302 -4.8431 -0.2893 23 7 -0.6631 -6.0539 -0.3823 24 6 -1.9158 -6.2968 0.0835 25 6 -2.2172 -7.5839 -0.2041 26 6 -1.1192 -8.1473 -0.8642 27 7 -0.1914 -7.2317 -0.9765 28 6 1.3138 -4.7368 -0.8136 29 6 1.9997 -3.5460 -0.7233 30 1 -0.3633 0.0870 1.0240 31 1 -0.3633 0.8433 -0.5873 32 1 -0.3633 -0.9304 -0.4366 33 1 1.6253 2.0185 0.5464 34 1 3.1658 1.1292 0.4806 35 1 0.6061 2.0597 -2.6950 36 1 0.6899 3.1227 -1.2173 37 1 2.2031 4.4709 -2.6169 38 1 2.6654 3.0283 -3.6169 39 1 4.6298 6.2671 -2.3786 40 1 -0.3485 -1.7047 0.9005 41 1 -1.5628 -3.8344 0.7328 42 1 -2.5554 -5.5902 0.5915 43 1 -3.1422 -8.0879 0.0337 44 1 -1.0511 -9.1634 -1.2237 45 1 1.7736 -5.5892 -1.2914 46 1 2.9964 -3.4639 -1.1311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085642234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:02 Heat of formation + Delta-G solvation = 167.534829 kcal Electronic energy + Delta-G solvation = -28369.482608 eV Core-core repulsion = 24457.553781 eV Total energy + Delta-G solvation = -3911.928827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.90328 -40.48998 -38.73903 -37.82272 -35.45867 -33.88952 -32.19358 -31.78308 -30.53003 -29.96461 -28.21168 -27.89712 -26.66169 -24.34424 -23.53184 -23.37160 -22.34826 -21.16882 -20.94008 -19.75612 -19.17658 -18.61709 -17.37248 -16.74933 -16.37776 -15.70965 -15.60145 -15.44624 -15.22748 -14.83962 -14.62248 -14.23449 -14.05238 -13.98763 -13.71710 -13.52351 -13.17261 -13.12176 -12.88015 -12.83382 -12.58360 -12.13971 -11.81736 -11.53486 -11.39141 -11.12213 -11.04839 -10.88105 -10.72629 -10.63217 -10.43602 -9.89436 -9.78580 -9.76230 -9.57904 -9.49911 -9.36963 -8.75044 -8.46635 -8.30012 -6.84548 -5.72137 -3.05639 0.21209 0.92323 1.61486 1.93617 2.34031 2.79197 3.06967 3.43623 3.47509 3.49132 3.53653 4.00423 4.24460 4.37771 4.47191 4.48166 4.51233 4.79981 4.88817 5.04141 5.07215 5.20423 5.21967 5.25450 5.27981 5.46000 5.47453 5.52243 5.56275 5.65617 5.69289 5.79839 5.82933 5.96687 6.00554 6.15809 6.19300 6.25998 6.30628 6.44487 6.52480 6.68887 6.72650 6.85330 7.17238 7.26022 7.44222 7.50109 7.61740 8.03319 8.27094 9.08459 9.74817 10.67832 11.44444 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002051 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.379374 B =13651.034076 C =14032.644912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.602 5.602 3 C 0.114 3.886 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.168 4.168 7 C 0.149 3.851 8 N -0.600 5.600 9 C -0.215 4.215 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.912 3.088 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.552 3.448 18 O -0.528 6.528 19 C -0.133 4.133 20 C -0.077 4.077 21 C -0.151 4.151 22 C 0.177 3.823 23 N -0.325 5.325 24 C 0.053 3.947 25 C -0.260 4.260 26 C 0.055 3.945 27 N -0.287 5.287 28 C -0.127 4.127 29 C -0.037 4.037 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.253 0.747 40 H 0.158 0.842 41 H 0.135 0.865 42 H 0.180 0.820 43 H 0.155 0.845 44 H 0.190 0.810 45 H 0.143 0.857 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.844 -22.903 4.848 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.334 5.334 3 C -0.009 4.009 4 C 0.026 3.974 5 H 0.060 0.940 6 C -0.206 4.206 7 C 0.023 3.977 8 N -0.325 5.325 9 C -0.343 4.343 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.742 3.258 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.339 3.661 18 O -0.405 6.405 19 C -0.137 4.137 20 C -0.095 4.095 21 C -0.172 4.172 22 C 0.084 3.916 23 N -0.101 5.101 24 C -0.089 4.089 25 C -0.288 4.288 26 C -0.133 4.133 27 N -0.105 5.105 28 C -0.147 4.147 29 C -0.057 4.057 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.175 0.825 41 H 0.153 0.847 42 H 0.197 0.803 43 H 0.173 0.827 44 H 0.207 0.793 45 H 0.161 0.839 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.714 -22.282 4.548 28.223 hybrid contribution -0.085 0.059 0.560 0.569 sum -16.799 -22.224 5.108 28.323 Atomic orbital electron populations 1.22520 0.80390 1.04236 1.01537 1.47759 1.06770 1.06399 1.72478 1.21956 0.97508 0.82074 0.99360 1.22416 0.90299 0.91370 0.93317 0.94030 1.23766 0.96406 0.99872 1.00546 1.22099 0.85641 0.99568 0.90364 1.45644 1.29970 1.18516 1.38414 1.18890 1.00839 0.98402 1.16132 0.90227 1.24782 0.99533 0.96771 0.99350 1.69821 1.41072 1.11493 1.34381 0.86196 0.82731 0.77891 0.78944 1.21160 1.21597 1.21030 1.18213 0.87155 0.83393 0.77297 1.90834 1.13425 1.86996 1.49205 1.20096 0.95245 0.95087 1.03229 1.21845 0.93055 0.97381 0.97259 1.20715 1.01401 0.91679 1.03417 1.17736 0.92444 0.82480 0.98979 1.46036 1.11824 1.08572 1.43714 1.22817 0.87212 0.98512 1.00321 1.21645 1.02291 0.94619 1.10280 1.24129 0.91504 0.99471 0.98149 1.77469 1.23236 0.91095 1.18721 1.20837 0.92858 0.99105 1.01908 1.21174 0.99734 0.90169 0.94579 0.92222 0.90473 0.89524 0.90210 0.89497 0.92849 0.90485 0.90561 0.96138 0.93691 0.82529 0.84700 0.80320 0.82734 0.79299 0.83918 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 8.81 59.85 0.53 1.05 16 2 N -0.60 -8.71 2.87 -182.76 -0.53 -9.23 16 3 C 0.11 2.07 5.44 -4.04 -0.02 2.04 16 4 C 0.13 2.79 4.31 -72.40 -0.31 2.48 16 5 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.17 -3.08 7.37 -26.15 -0.19 -3.28 16 7 C 0.15 3.55 7.50 -8.44 -0.06 3.48 16 8 N -0.60 -15.61 3.65 -176.79 -0.65 -16.25 16 9 C -0.22 -6.16 10.55 -15.05 -0.16 -6.32 16 10 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.65 11.43 55.49 0.63 -27.02 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.55 8.75 7.45 -12.41 -0.09 8.65 16 18 O -0.53 -10.75 16.24 5.30 0.09 -10.66 16 19 C -0.13 -1.62 5.51 -104.94 -0.58 -2.20 16 20 C -0.08 -0.67 7.45 -39.22 -0.29 -0.96 16 21 C -0.15 -1.18 9.44 -39.47 -0.37 -1.56 16 22 C 0.18 1.75 6.69 -83.60 -0.56 1.20 16 23 N -0.33 -3.17 3.81 -10.55 -0.04 -3.21 16 24 C 0.05 0.37 10.81 -16.83 -0.18 0.18 16 25 C -0.26 -1.64 10.80 -39.99 -0.43 -2.07 16 26 C 0.06 0.41 12.02 -17.34 -0.21 0.21 16 27 N -0.29 -3.03 11.85 30.64 0.36 -2.67 16 28 C -0.13 -1.38 9.64 -39.47 -0.38 -1.76 16 29 C -0.04 -0.44 9.59 -39.22 -0.38 -0.82 16 30 H 0.06 0.43 7.49 -51.93 -0.39 0.04 16 31 H 0.08 0.72 7.44 -51.93 -0.39 0.33 16 32 H 0.09 0.68 4.58 -51.93 -0.24 0.44 16 33 H 0.08 1.36 7.80 -51.93 -0.41 0.95 16 34 H 0.09 1.85 7.30 -51.93 -0.38 1.47 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.34 7.93 -51.92 -0.41 0.93 16 37 H 0.08 2.00 6.95 -51.93 -0.36 1.63 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.16 1.03 4.65 -52.49 -0.24 0.79 16 41 H 0.14 0.63 6.73 -52.48 -0.35 0.27 16 42 H 0.18 0.60 7.04 -52.49 -0.37 0.24 16 43 H 0.16 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 1.50 7.68 -52.49 -0.40 1.10 16 46 H 0.14 1.74 7.93 -52.49 -0.42 1.32 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -36.51 379.80 -9.23 -45.75 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.02 Total: -0.11 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.79 Total: 0.02 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.21 Total: -58.39 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.51 -9.23 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.280 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds