Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99885 * 2 1 4 4 C 1.52997 * 109.47530 * 272.11330 * 3 2 1 5 5 H 1.08999 * 112.74257 * 317.01783 * 4 3 2 6 6 C 1.53497 * 113.46477 * 87.75393 * 4 3 2 7 7 C 1.53615 * 83.30584 * 140.83261 * 6 4 3 8 8 N 1.47061 * 113.46915 * 186.26456 * 4 3 2 9 9 C 1.36946 * 136.05524 * 38.14311 * 8 4 3 10 10 H 1.07990 * 120.00052 * 4.25643 * 9 8 4 11 11 C 1.38812 * 119.99633 * 184.26040 * 9 8 4 12 12 N 1.31616 * 120.00036 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99784 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47346 * 59.99714 * 13 11 9 15 15 H 1.48498 * 109.47494 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47233 * 300.00040 * 13 11 9 17 17 C 1.34776 * 120.00439 * 180.02562 * 2 1 3 18 18 O 1.21579 * 120.00568 * 184.64334 * 17 2 1 19 19 C 1.47670 * 119.99632 * 4.64363 * 17 2 1 20 20 C 1.39710 * 120.07771 * 329.21378 * 19 17 2 21 21 C 1.37716 * 119.91887 * 180.27719 * 20 19 17 22 22 C 1.39051 * 120.08164 * 0.02562 * 21 20 19 23 23 N 1.39834 * 119.92170 * 179.97438 * 22 21 20 24 24 C 1.35841 * 126.10279 * 0.02562 * 23 22 21 25 25 C 1.35284 * 107.61734 * 180.02562 * 24 23 22 26 26 C 1.39958 * 107.96624 * 0.02562 * 25 24 23 27 27 N 1.30828 * 108.36743 * 359.71487 * 26 25 24 28 28 C 1.39054 * 120.15829 * 359.97438 * 22 21 20 29 29 C 1.37719 * 120.07607 * 0.02562 * 28 22 21 30 30 H 1.08999 * 109.46908 * 274.85757 * 1 2 3 31 31 H 1.09000 * 109.47146 * 34.85581 * 1 2 3 32 32 H 1.09002 * 109.46917 * 154.86177 * 1 2 3 33 33 H 1.08995 * 109.46842 * 32.11890 * 3 2 1 34 34 H 1.09002 * 109.46863 * 152.11703 * 3 2 1 35 35 H 1.08999 * 114.21041 * 254.43772 * 6 4 3 36 36 H 1.09007 * 114.20598 * 27.26609 * 6 4 3 37 37 H 1.09001 * 113.50522 * 219.18827 * 7 6 4 38 38 H 1.08993 * 113.46939 * 88.76431 * 7 6 4 39 39 H 0.97010 * 119.99588 * 180.02562 * 12 11 9 40 40 H 1.07997 * 120.03776 * 0.25500 * 20 19 17 41 41 H 1.08006 * 119.96051 * 180.02562 * 21 20 19 42 42 H 1.08000 * 126.19219 * 0.02562 * 24 23 22 43 43 H 1.07993 * 126.02012 * 180.02562 * 25 24 23 44 44 H 1.08000 * 125.81623 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.96452 * 179.97438 * 28 22 21 46 46 H 1.07998 * 120.04119 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4064 1.7371 -1.4414 5 1 2.7026 0.9278 -2.1087 6 6 1.2457 2.5825 -1.9838 7 6 2.3769 3.3949 -2.6318 8 7 3.2602 2.9294 -1.5519 9 6 4.3838 3.3991 -0.9255 10 1 4.8802 2.7938 -0.1816 11 6 4.8845 4.6533 -1.2468 12 7 4.2796 5.3908 -2.1538 13 14 6.4166 5.2943 -0.3919 14 1 7.5527 4.3756 -0.6575 15 1 6.7433 6.6471 -0.9099 16 1 6.1725 5.3694 1.0710 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1689 0.0847 19 6 1.4042 -2.4439 -0.1046 20 6 0.1145 -2.5544 0.4210 21 6 -0.5655 -3.7483 0.3271 22 6 0.0302 -4.8431 -0.2893 23 7 -0.6631 -6.0539 -0.3823 24 6 -1.9158 -6.2968 0.0835 25 6 -2.2172 -7.5839 -0.2041 26 6 -1.1192 -8.1473 -0.8642 27 7 -0.1914 -7.2317 -0.9765 28 6 1.3138 -4.7368 -0.8136 29 6 1.9997 -3.5460 -0.7233 30 1 -0.3633 0.0870 1.0240 31 1 -0.3633 0.8433 -0.5873 32 1 -0.3633 -0.9304 -0.4366 33 1 1.6253 2.0185 0.5464 34 1 3.1658 1.1292 0.4806 35 1 0.6061 2.0597 -2.6950 36 1 0.6899 3.1227 -1.2173 37 1 2.2031 4.4709 -2.6169 38 1 2.6654 3.0283 -3.6169 39 1 4.6298 6.2671 -2.3786 40 1 -0.3485 -1.7047 0.9005 41 1 -1.5628 -3.8344 0.7328 42 1 -2.5554 -5.5902 0.5915 43 1 -3.1422 -8.0879 0.0337 44 1 -1.0511 -9.1634 -1.2237 45 1 1.7736 -5.5892 -1.2914 46 1 2.9964 -3.4639 -1.1311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = 144.184622 kcal Electronic energy + Delta-G solvation = -28370.495149 eV Core-core repulsion = 24457.553781 eV Total energy + Delta-G solvation = -3912.941368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.48813 -41.53997 -40.03523 -39.18370 -36.69441 -34.66870 -34.25108 -32.59482 -31.11454 -30.87712 -29.92534 -29.30114 -27.68911 -25.45544 -25.25968 -24.19002 -23.68551 -21.91702 -21.54313 -21.11137 -20.70944 -19.23435 -18.78844 -18.31606 -17.57049 -17.04341 -16.56465 -16.26191 -16.20110 -16.05011 -15.91147 -15.54506 -15.15246 -15.03475 -14.72557 -14.48742 -14.40685 -14.03919 -13.77719 -13.65740 -13.63055 -13.56539 -13.42629 -12.99985 -12.81457 -12.63885 -12.53168 -12.27394 -12.09230 -11.80589 -11.67180 -11.63757 -11.39457 -11.29214 -10.93404 -10.84915 -10.15777 -10.13448 -9.65351 -9.10987 -8.92579 -7.91651 -5.26151 -0.54443 0.19116 0.95871 1.36238 1.41860 1.45630 1.51693 1.72082 1.86646 1.97440 2.46360 2.67551 3.27661 3.37051 3.44671 3.48502 3.69953 3.81849 3.88354 3.96256 4.11247 4.20159 4.23561 4.28927 4.34709 4.40957 4.52442 4.62107 4.66794 4.75735 4.79140 4.85256 4.89185 4.94715 4.98246 5.00455 5.07782 5.10256 5.13233 5.22107 5.22948 5.42241 5.49580 5.54543 5.70151 5.73491 5.95087 6.14798 6.37453 6.61766 6.90683 7.08986 7.58571 8.59496 9.24363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002051 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.379374 B =13651.034076 C =14032.644912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.597 5.597 3 C 0.129 3.871 4 C 0.133 3.867 5 H 0.022 0.978 6 C -0.125 4.125 7 C 0.137 3.863 8 N -0.631 5.631 9 C -0.226 4.226 10 H 0.072 0.928 11 C -0.064 4.064 12 N -0.949 5.949 13 Si 0.976 3.024 14 H -0.285 1.285 15 H -0.289 1.289 16 H -0.272 1.272 17 C 0.546 3.454 18 O -0.591 6.591 19 C -0.153 4.153 20 C -0.059 4.059 21 C -0.135 4.135 22 C 0.177 3.823 23 N -0.344 5.344 24 C 0.050 3.950 25 C -0.261 4.261 26 C 0.054 3.946 27 N -0.340 5.340 28 C -0.140 4.140 29 C -0.050 4.050 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.008 0.992 39 H 0.249 0.751 40 H 0.189 0.811 41 H 0.181 0.819 42 H 0.219 0.781 43 H 0.184 0.816 44 H 0.215 0.785 45 H 0.134 0.866 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.334 -24.202 6.546 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.328 5.328 3 C 0.005 3.995 4 C 0.026 3.974 5 H 0.040 0.960 6 C -0.162 4.162 7 C 0.012 3.988 8 N -0.357 5.357 9 C -0.354 4.354 10 H 0.090 0.910 11 C -0.257 4.257 12 N -0.598 5.598 13 Si 0.804 3.196 14 H -0.212 1.212 15 H -0.214 1.214 16 H -0.198 1.198 17 C 0.336 3.664 18 O -0.473 6.473 19 C -0.156 4.156 20 C -0.077 4.077 21 C -0.156 4.156 22 C 0.083 3.917 23 N -0.120 5.120 24 C -0.090 4.090 25 C -0.289 4.289 26 C -0.134 4.134 27 N -0.158 5.158 28 C -0.160 4.160 29 C -0.070 4.070 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.206 0.794 41 H 0.198 0.802 42 H 0.235 0.765 43 H 0.201 0.799 44 H 0.231 0.769 45 H 0.152 0.848 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.285 -23.624 6.252 32.408 hybrid contribution 1.206 0.253 -0.014 1.232 sum -20.079 -23.371 6.238 31.437 Atomic orbital electron populations 1.22960 0.76617 1.05865 1.04193 1.47780 1.08907 1.04519 1.71572 1.21510 0.96669 0.84261 0.97085 1.22492 0.90269 0.89821 0.94811 0.96004 1.23529 0.94792 0.97427 1.00501 1.22162 0.88040 0.98716 0.89892 1.46053 1.29944 1.20696 1.39020 1.19137 1.01816 0.98529 1.15956 0.90986 1.25587 1.02587 0.97138 1.00425 1.69997 1.42427 1.11540 1.35804 0.85196 0.79081 0.76946 0.78387 1.21184 1.21445 1.19810 1.18845 0.86662 0.84860 0.76012 1.90794 1.16336 1.87961 1.52160 1.19833 0.96900 0.93043 1.05861 1.22119 0.91130 0.98798 0.95702 1.21128 1.02794 0.89969 1.01680 1.17986 0.91973 0.83546 0.98153 1.46149 1.12886 1.08234 1.44731 1.23584 0.86275 0.99592 0.99505 1.22093 1.02823 0.94614 1.09345 1.24747 0.91361 1.00122 0.97129 1.77451 1.25243 0.92290 1.20841 1.20723 0.93976 0.98285 1.02999 1.21027 0.99298 0.91035 0.95601 0.88794 0.89555 0.87404 0.88405 0.93587 0.88837 0.88504 0.93309 0.97463 0.94182 0.79446 0.80197 0.76483 0.79867 0.76895 0.84849 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 8.81 127.77 1.13 1.76 16 2 N -0.60 -16.51 2.87 -850.40 -2.44 -18.95 16 3 C 0.13 4.68 5.44 86.38 0.47 5.15 16 4 C 0.13 5.58 4.31 41.79 0.18 5.76 16 5 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 6 C -0.12 -4.33 7.37 30.97 0.23 -4.10 16 7 C 0.14 6.66 7.50 83.22 0.62 7.29 16 8 N -0.63 -33.79 3.65 -713.25 -2.60 -36.39 16 9 C -0.23 -13.39 10.55 84.03 0.89 -12.50 16 10 H 0.07 4.24 7.83 -2.92 -0.02 4.22 16 11 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 12 N -0.95 -58.67 11.43 21.65 0.25 -58.42 16 13 Si 0.98 47.83 29.55 68.60 2.03 49.86 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 17 C 0.55 17.66 7.45 86.73 0.65 18.31 16 18 O -0.59 -25.89 16.24 -3.97 -0.06 -25.96 16 19 C -0.15 -3.64 5.51 -20.07 -0.11 -3.75 16 20 C -0.06 -0.82 7.45 22.50 0.17 -0.65 16 21 C -0.14 -1.52 9.44 22.34 0.21 -1.31 16 22 C 0.18 3.16 6.69 38.26 0.26 3.42 16 23 N -0.34 -5.92 3.81 -187.28 -0.71 -6.63 16 24 C 0.05 0.49 10.81 83.39 0.90 1.39 16 25 C -0.26 -2.35 10.80 22.00 0.24 -2.11 16 26 C 0.05 0.70 12.02 85.26 1.02 1.72 16 27 N -0.34 -6.88 11.85 -56.97 -0.67 -7.55 16 28 C -0.14 -3.11 9.64 22.34 0.22 -2.89 16 29 C -0.05 -1.26 9.59 22.50 0.22 -1.04 16 30 H 0.09 0.80 7.49 -2.39 -0.02 0.78 16 31 H 0.09 1.16 7.44 -2.39 -0.02 1.14 16 32 H 0.11 1.14 4.58 -2.39 -0.01 1.13 16 33 H 0.10 3.17 7.80 -2.39 -0.02 3.15 16 34 H 0.05 2.05 7.30 -2.39 -0.02 2.04 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.10 3.04 7.93 -2.38 -0.02 3.02 16 37 H 0.05 2.62 6.95 -2.39 -0.02 2.60 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 40 H 0.19 1.39 4.65 -2.91 -0.01 1.38 16 41 H 0.18 0.39 6.73 -2.91 -0.02 0.38 16 42 H 0.22 0.12 7.04 -2.91 -0.02 0.09 16 43 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 44 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 45 H 0.13 3.09 7.68 -2.91 -0.02 3.07 16 46 H 0.12 3.45 7.93 -2.91 -0.02 3.42 16 Total: -1.00 -87.70 379.80 4.53 -83.17 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.00 Total: 7.78 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 7.75 Total: 13.10 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -6.19 Total: -127.95 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.96 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -87.70 4.53 -83.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.353 kcal (2) G-P(sol) polarization free energy of solvation -87.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds