Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00294 * 2 1 4 4 C 1.53001 * 109.47029 * 275.69741 * 3 2 1 5 5 H 1.08998 * 112.97059 * 65.97025 * 4 3 2 6 6 C 1.53945 * 113.76845 * 294.29219 * 4 3 2 7 7 C 1.53942 * 86.29210 * 222.09380 * 6 4 3 8 8 N 1.47579 * 86.11801 * 23.60527 * 7 6 4 9 9 C 1.36937 * 134.49075 * 155.35571 * 8 7 6 10 10 H 1.08008 * 119.99406 * 185.19925 * 9 8 7 11 11 C 1.38803 * 120.00212 * 5.20912 * 9 8 7 12 12 N 1.31614 * 120.00189 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99861 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46926 * 89.99933 * 13 11 9 15 15 H 1.48505 * 109.46911 * 209.99633 * 13 11 9 16 16 H 1.48497 * 109.47535 * 329.99767 * 13 11 9 17 17 C 1.34777 * 120.00055 * 179.97438 * 2 1 3 18 18 O 1.21514 * 120.00348 * 176.25834 * 17 2 1 19 19 C 1.48163 * 120.00099 * 356.25803 * 17 2 1 20 20 C 1.39953 * 120.88929 * 36.47963 * 19 17 2 21 21 C 1.38029 * 119.14176 * 179.97438 * 20 19 17 22 22 N 1.31862 * 120.98442 * 359.97438 * 21 20 19 23 23 C 1.32242 * 121.96775 * 0.02562 * 22 21 20 24 24 N 1.39783 * 119.62847 * 180.02562 * 23 22 21 25 25 C 1.36643 * 125.68329 * 179.69117 * 24 23 22 26 26 C 1.34807 * 108.19952 * 179.89070 * 25 24 23 27 27 C 1.40983 * 107.48167 * 0.37060 * 26 25 24 28 28 C 1.34814 * 107.48662 * 359.77046 * 27 26 25 29 29 C 1.38928 * 120.74415 * 359.74841 * 23 22 21 30 30 H 1.09007 * 109.46880 * 94.99074 * 1 2 3 31 31 H 1.08997 * 109.47205 * 214.98424 * 1 2 3 32 32 H 1.08991 * 109.47245 * 334.98984 * 1 2 3 33 33 H 1.09000 * 109.47574 * 155.69508 * 3 2 1 34 34 H 1.08998 * 109.47290 * 35.69289 * 3 2 1 35 35 H 1.09000 * 113.74478 * 336.43579 * 6 4 3 36 36 H 1.08999 * 113.74139 * 107.63723 * 6 4 3 37 37 H 1.09002 * 113.77255 * 137.90761 * 7 6 4 38 38 H 1.09002 * 113.76823 * 269.19435 * 7 6 4 39 39 H 0.97003 * 120.00531 * 179.97438 * 12 11 9 40 40 H 1.08000 * 120.43196 * 359.95983 * 20 19 17 41 41 H 1.08005 * 119.51163 * 180.02562 * 21 20 19 42 42 H 1.08006 * 125.90377 * 0.02562 * 25 24 23 43 43 H 1.07998 * 126.26534 * 180.13821 * 26 25 24 44 44 H 1.07997 * 126.26039 * 179.78942 * 27 26 25 45 45 H 1.08000 * 125.90200 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.52940 * 180.26032 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3285 1.7819 -1.4354 5 1 1.3707 2.0538 -1.8790 6 6 3.1983 0.8874 -2.3372 7 6 3.7995 2.1948 -2.8841 8 7 3.3783 2.8047 -1.6079 9 6 3.7946 3.8855 -0.8773 10 1 3.3627 4.0797 0.0935 11 6 4.7713 4.7315 -1.3843 12 7 5.2977 4.4946 -2.5671 13 14 5.3385 6.2062 -0.3878 14 1 6.4806 5.8108 0.4751 15 1 5.7656 7.2907 -1.3080 16 1 4.2204 6.6895 0.4616 17 6 2.1389 -1.1672 0.0005 18 8 3.3521 -1.1684 -0.0681 19 6 1.4005 -2.4489 0.0848 20 6 0.1666 -2.6108 -0.5555 21 6 -0.4901 -3.8206 -0.4536 22 7 0.0285 -4.8185 0.2349 23 6 1.1911 -4.7111 0.8559 24 7 1.6954 -5.8007 1.5717 25 6 2.8806 -5.8281 2.2513 26 6 3.0159 -7.0463 2.8127 27 6 1.8791 -7.8029 2.4619 28 6 1.0882 -7.0177 1.7033 29 6 1.9195 -3.5294 0.8003 30 1 -0.3633 -0.0894 -1.0238 31 1 -0.3633 -0.8419 0.5892 32 1 -0.3633 0.9312 0.4344 33 1 3.1903 1.1150 0.4230 34 1 1.6564 2.0007 0.5996 35 1 3.9115 0.2724 -1.7885 36 1 2.6289 0.3220 -3.0748 37 1 4.8807 2.1590 -3.0182 38 1 3.2758 2.5886 -3.7552 39 1 5.9800 5.0860 -2.9216 40 1 -0.2664 -1.7995 -1.1219 41 1 -1.4424 -3.9521 -0.9457 42 1 3.5860 -5.0138 2.3276 43 1 3.8453 -7.3826 3.4171 44 1 1.6784 -8.8245 2.7488 45 1 0.1387 -7.3015 1.2741 46 1 2.8705 -3.4468 1.3053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085657494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = 141.604202 kcal Electronic energy + Delta-G solvation = -28738.974724 eV Core-core repulsion = 24825.921461 eV Total energy + Delta-G solvation = -3913.053263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04321 -40.69620 -39.32979 -37.69581 -35.59375 -33.73299 -33.07013 -32.12886 -29.88139 -29.19804 -28.56818 -27.82370 -26.94589 -24.73994 -24.08404 -23.28013 -22.50315 -21.07359 -20.47546 -19.78218 -19.00846 -18.50872 -17.27126 -16.79613 -16.61378 -16.22291 -16.13582 -15.62179 -15.36043 -14.94440 -14.74511 -14.11052 -14.04239 -13.81033 -13.75491 -13.61592 -13.43166 -13.32690 -12.81484 -12.62555 -12.43873 -12.35427 -12.22249 -11.87104 -11.41121 -11.06850 -10.94800 -10.72750 -10.56586 -10.37835 -10.35421 -10.21821 -9.89317 -9.80582 -9.69803 -9.50451 -8.79933 -8.57448 -8.52940 -8.48967 -6.86169 -5.75668 -3.07982 0.26682 0.46101 2.00566 2.21588 2.70206 2.73491 2.85458 3.39158 3.41140 3.43354 3.45646 3.87814 4.06426 4.32620 4.45725 4.48431 4.54115 4.88059 4.92117 4.99521 5.04383 5.13968 5.17533 5.23674 5.31139 5.34126 5.43826 5.48737 5.53066 5.60705 5.82557 5.87902 5.90370 5.94817 6.01026 6.04564 6.32409 6.46378 6.57585 6.59608 6.71495 6.72464 6.78192 7.03825 7.26799 7.30504 7.42099 7.50841 7.61538 7.99405 8.06374 9.05199 9.72091 10.62406 11.41825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002293 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.208486 B =12208.573626 C =12832.683132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.597 5.597 3 C 0.115 3.885 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.225 4.225 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.553 3.447 18 O -0.510 6.510 19 C -0.044 4.044 20 C -0.169 4.169 21 C 0.132 3.868 22 N -0.494 5.494 23 C 0.348 3.652 24 N -0.396 5.396 25 C -0.014 4.014 26 C -0.181 4.181 27 C -0.197 4.197 28 C 0.011 3.989 29 C -0.136 4.136 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.254 0.746 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.169 0.831 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 -20.580 6.967 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.329 5.329 3 C -0.008 4.008 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.198 4.198 7 C 0.039 3.961 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.056 4.056 20 C -0.190 4.190 21 C -0.025 4.025 22 N -0.207 5.207 23 C 0.121 3.879 24 N -0.071 5.071 25 C -0.139 4.139 26 C -0.206 4.206 27 C -0.221 4.221 28 C -0.115 4.115 29 C -0.159 4.159 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.175 0.825 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.187 0.813 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.725 -20.791 6.896 25.850 hybrid contribution 0.534 1.764 0.293 1.866 sum -13.191 -19.027 7.190 24.243 Atomic orbital electron populations 1.22205 0.79933 1.03565 1.01670 1.47694 1.06887 1.06240 1.72110 1.21972 0.97774 0.81735 0.99271 1.22507 0.93131 0.89722 0.92647 0.94068 1.23857 0.99566 0.97662 0.98730 1.22106 0.99478 0.86235 0.88234 1.45964 1.34375 1.30235 1.22027 1.18963 1.17294 1.00753 0.98212 0.90400 1.24801 0.99773 0.98991 0.96779 1.69835 1.30256 1.39079 1.17372 0.86165 0.78615 0.82356 0.78863 1.21512 1.21665 1.20722 1.18052 0.87143 0.83033 0.77910 1.90848 1.12941 1.86539 1.48209 1.20274 0.94420 0.94558 0.96353 1.22788 0.94768 1.00319 1.01092 1.22558 0.99243 0.87070 0.93650 1.66841 1.10822 1.33512 1.09537 1.18079 0.90771 0.86172 0.92928 1.41464 1.17320 1.09469 1.38835 1.22001 0.89407 1.01053 1.01461 1.21054 1.00547 0.93717 1.05235 1.21072 0.96362 1.00377 1.04301 1.22055 1.00743 0.84132 1.04596 1.21576 1.01561 0.91097 1.01661 0.91911 0.91008 0.90360 0.88700 0.90982 0.89513 0.94014 0.91544 0.95636 0.93642 0.82460 0.81031 0.81353 0.83794 0.83993 0.81339 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.89 59.85 0.53 1.13 16 2 N -0.60 -7.94 2.80 -182.58 -0.51 -8.45 16 3 C 0.12 1.96 5.41 -4.04 -0.02 1.94 16 4 C 0.13 2.55 4.58 -66.86 -0.31 2.24 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.24 7.24 -25.81 -0.19 -3.43 16 7 C 0.16 4.03 7.39 -2.98 -0.02 4.01 16 8 N -0.60 -15.33 3.57 -170.76 -0.61 -15.94 16 9 C -0.22 -6.23 10.51 -15.06 -0.16 -6.39 16 10 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 11 C -0.01 -0.19 5.50 -17.44 -0.10 -0.29 16 12 N -0.92 -27.63 11.52 55.49 0.64 -26.99 16 13 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.55 8.01 7.07 -12.18 -0.09 7.92 16 18 O -0.51 -9.48 14.67 5.35 0.08 -9.40 16 19 C -0.04 -0.51 5.31 -104.67 -0.56 -1.06 16 20 C -0.17 -1.41 7.68 -39.02 -0.30 -1.71 16 21 C 0.13 1.03 11.17 -17.62 -0.20 0.83 16 22 N -0.49 -5.14 9.80 -12.35 -0.12 -5.26 16 23 C 0.35 3.94 7.48 -154.46 -1.16 2.78 16 24 N -0.40 -4.39 2.97 -62.67 -0.19 -4.58 16 25 C -0.01 -0.14 10.72 -16.62 -0.18 -0.32 16 26 C -0.18 -1.70 10.86 -39.76 -0.43 -2.13 16 27 C -0.20 -1.83 10.86 -39.76 -0.43 -2.26 16 28 C 0.01 0.11 11.00 -16.62 -0.18 -0.07 16 29 C -0.14 -1.56 9.10 -38.82 -0.35 -1.92 16 30 H 0.06 0.44 6.84 -51.93 -0.36 0.09 16 31 H 0.07 0.50 5.83 -51.93 -0.30 0.19 16 32 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 33 H 0.09 1.91 7.31 -51.93 -0.38 1.53 16 34 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 35 H 0.09 1.90 6.45 -51.93 -0.34 1.56 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.80 7.40 -51.93 -0.38 1.41 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.16 0.97 5.17 -52.49 -0.27 0.70 16 41 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.17 1.40 6.98 -52.48 -0.37 1.03 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.17 1.47 8.04 -52.49 -0.42 1.05 16 46 H 0.15 1.67 6.68 -52.49 -0.35 1.32 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -34.93 378.25 -10.24 -45.16 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.07 Total: 1.31 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -4.13 Total: 1.28 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.79 Total: -61.23 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.93 -10.24 -45.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.768 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds