Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00294 * 2 1 4 4 C 1.53001 * 109.47029 * 275.69741 * 3 2 1 5 5 H 1.08998 * 112.97059 * 65.97025 * 4 3 2 6 6 C 1.53945 * 113.76845 * 294.29219 * 4 3 2 7 7 C 1.53942 * 86.29210 * 222.09380 * 6 4 3 8 8 N 1.47579 * 86.11801 * 23.60527 * 7 6 4 9 9 C 1.36937 * 134.49075 * 155.35571 * 8 7 6 10 10 H 1.08008 * 119.99406 * 185.19925 * 9 8 7 11 11 C 1.38803 * 120.00212 * 5.20912 * 9 8 7 12 12 N 1.31614 * 120.00189 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99861 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46926 * 89.99933 * 13 11 9 15 15 H 1.48505 * 109.46911 * 209.99633 * 13 11 9 16 16 H 1.48497 * 109.47535 * 329.99767 * 13 11 9 17 17 C 1.34777 * 120.00055 * 179.97438 * 2 1 3 18 18 O 1.21514 * 120.00348 * 176.25834 * 17 2 1 19 19 C 1.48163 * 120.00099 * 356.25803 * 17 2 1 20 20 C 1.39953 * 120.88929 * 36.47963 * 19 17 2 21 21 C 1.38029 * 119.14176 * 179.97438 * 20 19 17 22 22 N 1.31862 * 120.98442 * 359.97438 * 21 20 19 23 23 C 1.32242 * 121.96775 * 0.02562 * 22 21 20 24 24 N 1.39783 * 119.62847 * 180.02562 * 23 22 21 25 25 C 1.36643 * 125.68329 * 179.69117 * 24 23 22 26 26 C 1.34807 * 108.19952 * 179.89070 * 25 24 23 27 27 C 1.40983 * 107.48167 * 0.37060 * 26 25 24 28 28 C 1.34814 * 107.48662 * 359.77046 * 27 26 25 29 29 C 1.38928 * 120.74415 * 359.74841 * 23 22 21 30 30 H 1.09007 * 109.46880 * 94.99074 * 1 2 3 31 31 H 1.08997 * 109.47205 * 214.98424 * 1 2 3 32 32 H 1.08991 * 109.47245 * 334.98984 * 1 2 3 33 33 H 1.09000 * 109.47574 * 155.69508 * 3 2 1 34 34 H 1.08998 * 109.47290 * 35.69289 * 3 2 1 35 35 H 1.09000 * 113.74478 * 336.43579 * 6 4 3 36 36 H 1.08999 * 113.74139 * 107.63723 * 6 4 3 37 37 H 1.09002 * 113.77255 * 137.90761 * 7 6 4 38 38 H 1.09002 * 113.76823 * 269.19435 * 7 6 4 39 39 H 0.97003 * 120.00531 * 179.97438 * 12 11 9 40 40 H 1.08000 * 120.43196 * 359.95983 * 20 19 17 41 41 H 1.08005 * 119.51163 * 180.02562 * 21 20 19 42 42 H 1.08006 * 125.90377 * 0.02562 * 25 24 23 43 43 H 1.07998 * 126.26534 * 180.13821 * 26 25 24 44 44 H 1.07997 * 126.26039 * 179.78942 * 27 26 25 45 45 H 1.08000 * 125.90200 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.52940 * 180.26032 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3285 1.7819 -1.4354 5 1 1.3707 2.0538 -1.8790 6 6 3.1983 0.8874 -2.3372 7 6 3.7995 2.1948 -2.8841 8 7 3.3783 2.8047 -1.6079 9 6 3.7946 3.8855 -0.8773 10 1 3.3627 4.0797 0.0935 11 6 4.7713 4.7315 -1.3843 12 7 5.2977 4.4946 -2.5671 13 14 5.3385 6.2062 -0.3878 14 1 6.4806 5.8108 0.4751 15 1 5.7656 7.2907 -1.3080 16 1 4.2204 6.6895 0.4616 17 6 2.1389 -1.1672 0.0005 18 8 3.3521 -1.1684 -0.0681 19 6 1.4005 -2.4489 0.0848 20 6 0.1666 -2.6108 -0.5555 21 6 -0.4901 -3.8206 -0.4536 22 7 0.0285 -4.8185 0.2349 23 6 1.1911 -4.7111 0.8559 24 7 1.6954 -5.8007 1.5717 25 6 2.8806 -5.8281 2.2513 26 6 3.0159 -7.0463 2.8127 27 6 1.8791 -7.8029 2.4619 28 6 1.0882 -7.0177 1.7033 29 6 1.9195 -3.5294 0.8003 30 1 -0.3633 -0.0894 -1.0238 31 1 -0.3633 -0.8419 0.5892 32 1 -0.3633 0.9312 0.4344 33 1 3.1903 1.1150 0.4230 34 1 1.6564 2.0007 0.5996 35 1 3.9115 0.2724 -1.7885 36 1 2.6289 0.3220 -3.0748 37 1 4.8807 2.1590 -3.0182 38 1 3.2758 2.5886 -3.7552 39 1 5.9800 5.0860 -2.9216 40 1 -0.2664 -1.7995 -1.1219 41 1 -1.4424 -3.9521 -0.9457 42 1 3.5860 -5.0138 2.3276 43 1 3.8453 -7.3826 3.4171 44 1 1.6784 -8.8245 2.7488 45 1 0.1387 -7.3015 1.2741 46 1 2.8705 -3.4468 1.3053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085657494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = 121.529417 kcal Electronic energy + Delta-G solvation = -28739.845232 eV Core-core repulsion = 24825.921461 eV Total energy + Delta-G solvation = -3913.923771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78781 -41.63805 -40.37517 -39.32668 -36.74501 -34.59354 -34.18738 -33.82029 -30.72985 -29.96572 -29.85514 -29.71242 -27.83657 -25.81424 -25.25884 -24.81162 -23.88383 -21.99398 -21.21274 -20.87948 -20.58928 -19.39852 -18.67702 -18.15111 -17.46783 -17.33040 -17.13863 -16.72686 -16.52520 -16.34137 -15.80113 -15.71535 -15.20445 -14.82630 -14.78858 -14.52295 -14.36266 -14.22496 -14.10852 -13.87307 -13.44237 -13.36522 -13.26960 -13.03143 -12.95389 -12.71333 -12.57861 -12.54191 -12.26953 -11.84989 -11.62078 -11.45225 -11.27194 -11.16154 -10.96217 -10.86102 -10.68191 -9.75394 -9.28336 -9.26308 -8.89755 -7.89964 -5.22933 -0.51228 -0.30126 1.25944 1.43488 1.45286 1.46773 1.54445 1.70961 1.81199 2.02123 2.48147 2.64927 3.07274 3.29067 3.33133 3.44128 3.57143 3.74260 3.84933 3.90025 4.14249 4.20521 4.25718 4.28569 4.34565 4.36793 4.46598 4.48428 4.62408 4.65578 4.67064 4.75163 4.83029 4.86261 4.93182 5.01399 5.07408 5.20329 5.22213 5.27131 5.34246 5.43292 5.52974 5.73512 5.86174 5.93784 6.02486 6.25605 6.30912 6.70467 6.91295 6.97228 7.62067 8.58180 9.28212 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002293 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.208486 B =12208.573626 C =12832.683132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.592 5.592 3 C 0.129 3.871 4 C 0.138 3.862 5 H 0.068 0.932 6 C -0.135 4.135 7 C 0.158 3.842 8 N -0.630 5.630 9 C -0.226 4.226 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.958 5.958 13 Si 0.977 3.023 14 H -0.290 1.290 15 H -0.296 1.296 16 H -0.263 1.263 17 C 0.550 3.450 18 O -0.564 6.564 19 C -0.056 4.056 20 C -0.151 4.151 21 C 0.143 3.857 22 N -0.504 5.504 23 C 0.335 3.665 24 N -0.405 5.405 25 C -0.034 4.034 26 C -0.187 4.187 27 C -0.200 4.200 28 C -0.005 4.005 29 C -0.150 4.150 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.246 0.754 40 H 0.187 0.813 41 H 0.217 0.783 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.180 0.820 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 -21.498 7.508 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.323 5.323 3 C 0.005 3.995 4 C 0.031 3.969 5 H 0.085 0.915 6 C -0.174 4.174 7 C 0.033 3.967 8 N -0.357 5.357 9 C -0.354 4.354 10 H 0.107 0.893 11 C -0.266 4.266 12 N -0.607 5.607 13 Si 0.805 3.195 14 H -0.217 1.217 15 H -0.223 1.223 16 H -0.187 1.187 17 C 0.338 3.662 18 O -0.443 6.443 19 C -0.068 4.068 20 C -0.172 4.172 21 C -0.015 4.015 22 N -0.217 5.217 23 C 0.108 3.892 24 N -0.081 5.081 25 C -0.159 4.159 26 C -0.211 4.211 27 C -0.224 4.224 28 C -0.130 4.130 29 C -0.173 4.173 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.204 0.796 41 H 0.233 0.767 42 H 0.192 0.808 43 H 0.180 0.820 44 H 0.181 0.819 45 H 0.197 0.803 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.407 -21.745 7.474 28.840 hybrid contribution 1.563 1.953 0.114 2.504 sum -15.844 -19.792 7.589 26.464 Atomic orbital electron populations 1.22606 0.76434 1.05293 1.03934 1.47686 1.08831 1.04438 1.71334 1.21519 0.96949 0.83832 0.97225 1.22673 0.92637 0.87227 0.94363 0.91499 1.23560 0.99096 0.95853 0.98847 1.22034 0.97354 0.88945 0.88385 1.46312 1.36489 1.30625 1.22240 1.19413 1.16579 1.00685 0.98710 0.89309 1.25678 1.00652 1.02217 0.98092 1.70035 1.31208 1.40172 1.19298 0.85100 0.78325 0.78718 0.77335 1.21734 1.22296 1.18713 1.18535 0.86689 0.84207 0.76731 1.90826 1.15440 1.87378 1.50639 1.20038 0.95753 0.92867 0.98133 1.23092 0.92987 1.01396 0.99685 1.23332 1.00160 0.85921 0.92103 1.66951 1.10361 1.34603 1.09798 1.18157 0.91282 0.86143 0.93573 1.41623 1.17626 1.09779 1.39090 1.22305 0.89751 1.01846 1.02029 1.21394 1.01162 0.93465 1.05051 1.21413 0.95988 1.01260 1.03754 1.22378 1.01425 0.84080 1.05124 1.21522 1.01573 0.91724 1.02511 0.89243 0.88970 0.89126 0.92564 0.89197 0.91481 0.90752 0.95481 0.95989 0.94464 0.79559 0.76662 0.80794 0.82040 0.81905 0.80315 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 8.89 127.77 1.14 1.87 16 2 N -0.59 -14.43 2.80 -849.86 -2.38 -16.81 16 3 C 0.13 4.24 5.41 86.38 0.47 4.71 16 4 C 0.14 5.27 4.58 45.09 0.21 5.48 16 5 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 6 C -0.14 -5.44 7.24 31.25 0.23 -5.21 16 7 C 0.16 7.96 7.39 86.48 0.64 8.60 16 8 N -0.63 -32.48 3.57 -694.15 -2.48 -34.96 16 9 C -0.23 -12.60 10.51 84.03 0.88 -11.71 16 10 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 11 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 12 N -0.96 -59.73 11.52 21.65 0.25 -59.48 16 13 Si 0.98 46.39 29.55 68.60 2.03 48.41 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 C 0.55 15.56 7.07 86.88 0.61 16.17 16 18 O -0.56 -21.72 14.67 -3.76 -0.06 -21.77 16 19 C -0.06 -1.20 5.31 -19.90 -0.11 -1.31 16 20 C -0.15 -1.91 7.68 22.64 0.17 -1.74 16 21 C 0.14 1.61 11.17 84.64 0.95 2.56 16 22 N -0.50 -9.24 9.80 -192.98 -1.89 -11.13 16 23 C 0.33 7.32 7.48 132.79 0.99 8.31 16 24 N -0.41 -8.91 2.97 -352.20 -1.04 -9.95 16 25 C -0.03 -0.71 10.72 83.16 0.89 0.19 16 26 C -0.19 -3.41 10.86 22.15 0.24 -3.17 16 27 C -0.20 -3.51 10.86 22.16 0.24 -3.27 16 28 C 0.00 -0.09 11.00 83.16 0.91 0.82 16 29 C -0.15 -3.45 9.10 22.76 0.21 -3.24 16 30 H 0.09 0.72 6.84 -2.38 -0.02 0.70 16 31 H 0.09 0.84 5.83 -2.39 -0.01 0.82 16 32 H 0.09 0.99 7.90 -2.39 -0.02 0.97 16 33 H 0.06 2.31 7.31 -2.39 -0.02 2.30 16 34 H 0.09 2.64 7.95 -2.39 -0.02 2.62 16 35 H 0.07 3.01 6.45 -2.39 -0.02 2.99 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.03 1.54 7.40 -2.39 -0.02 1.53 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.19 1.22 5.17 -2.91 -0.02 1.20 16 41 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 42 H 0.17 3.13 6.98 -2.91 -0.02 3.11 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.18 2.91 8.04 -2.91 -0.02 2.88 16 46 H 0.14 3.35 6.68 -2.91 -0.02 3.33 16 Total: -1.00 -80.62 378.25 4.57 -76.05 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.00 Total: 14.41 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 9.14 Total: 15.23 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -7.54 Total: -132.32 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.77 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.62 4.57 -76.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.578 kcal (2) G-P(sol) polarization free energy of solvation -80.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds