Wall clock time and date at job start Sat Apr 11 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99955 * 2 1 4 4 C 1.52992 * 109.47433 * 83.50655 * 3 2 1 5 5 H 1.09005 * 112.96214 * 294.66522 * 4 3 2 6 6 C 1.53940 * 113.77064 * 66.33969 * 4 3 2 7 7 C 1.53948 * 86.29103 * 137.91210 * 6 4 3 8 8 N 1.47576 * 113.77283 * 162.98746 * 4 3 2 9 9 C 1.36937 * 134.49405 * 41.06549 * 8 4 3 10 10 H 1.08004 * 119.99523 * 336.93582 * 9 8 4 11 11 C 1.38812 * 120.00364 * 156.93400 * 9 8 4 12 12 N 1.31625 * 120.00096 * 173.45304 * 11 9 8 13 13 Si 1.86796 * 119.99886 * 353.45575 * 11 9 8 14 14 H 1.48503 * 109.47303 * 85.39217 * 13 11 9 15 15 H 1.48497 * 109.47281 * 205.39347 * 13 11 9 16 16 H 1.48506 * 109.47317 * 325.39382 * 13 11 9 17 17 C 1.34776 * 119.99914 * 180.02562 * 2 1 3 18 18 O 1.21514 * 119.99715 * 184.93067 * 17 2 1 19 19 C 1.48158 * 120.00196 * 4.93340 * 17 2 1 20 20 C 1.39960 * 120.88709 * 20.06700 * 19 17 2 21 21 C 1.38036 * 119.13523 * 179.77203 * 20 19 17 22 22 N 1.31858 * 120.98495 * 0.52107 * 21 20 19 23 23 C 1.32233 * 121.97133 * 359.72664 * 22 21 20 24 24 N 1.39786 * 119.63255 * 180.02562 * 23 22 21 25 25 C 1.36647 * 125.68596 * 179.67879 * 24 23 22 26 26 C 1.34800 * 108.19570 * 179.86642 * 25 24 23 27 27 C 1.40978 * 107.48629 * 0.38942 * 26 25 24 28 28 C 1.34805 * 107.48889 * 359.75366 * 27 26 25 29 29 C 1.38938 * 120.74433 * 0.02562 * 23 22 21 30 30 H 1.08996 * 109.47181 * 84.62963 * 1 2 3 31 31 H 1.09007 * 109.46944 * 324.62847 * 1 2 3 32 32 H 1.08994 * 109.47001 * 204.63149 * 1 2 3 33 33 H 1.09003 * 109.47260 * 203.51148 * 3 2 1 34 34 H 1.09007 * 109.46746 * 323.50273 * 3 2 1 35 35 H 1.08997 * 113.74368 * 252.25667 * 6 4 3 36 36 H 1.09000 * 113.74442 * 23.46052 * 6 4 3 37 37 H 1.08999 * 113.77194 * 90.69637 * 7 6 4 38 38 H 1.09004 * 113.77221 * 221.98487 * 7 6 4 39 39 H 0.97001 * 119.99672 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.43412 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.50739 * 180.22809 * 21 20 19 42 42 H 1.08008 * 125.89751 * 359.97438 * 25 24 23 43 43 H 1.08006 * 126.25746 * 180.10848 * 26 25 24 44 44 H 1.08000 * 126.25878 * 179.79843 * 27 26 25 45 45 H 1.07993 * 125.90910 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.52686 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3113 1.7920 1.4331 5 1 1.3469 2.0565 1.8671 6 6 3.1828 0.9122 2.3476 7 6 3.7657 2.2292 2.8914 8 7 3.3465 2.8293 1.6073 9 6 3.7540 3.9112 0.8734 10 1 3.5615 3.9466 -0.1887 11 6 4.4145 4.9622 1.4946 12 7 4.9197 5.9404 0.7730 13 14 4.5865 4.9885 3.3544 14 1 5.7810 4.2010 3.7523 15 1 4.7415 6.3909 3.8174 16 1 3.3737 4.3945 3.9722 17 6 2.1389 -1.1672 -0.0005 18 8 3.3507 -1.1692 0.0899 19 6 1.4022 -2.4479 -0.1114 20 6 0.1005 -2.4859 -0.6241 21 6 -0.5506 -3.6996 -0.7157 22 7 0.0320 -4.8140 -0.3190 23 6 1.2580 -4.8253 0.1761 24 7 1.8287 -6.0354 0.5813 25 6 3.0826 -6.1906 1.1017 26 6 3.2674 -7.4984 1.3715 27 6 2.0907 -8.1786 0.9972 28 6 1.2275 -7.2609 0.5174 29 6 1.9856 -3.6480 0.2982 30 1 -0.3633 0.0962 -1.0231 31 1 -0.3633 0.8380 0.5949 32 1 -0.3633 -0.9341 0.4283 33 1 3.1953 1.1122 -0.4100 34 1 1.6636 1.9964 -0.6113 35 1 2.6133 0.3468 3.0852 36 1 3.9057 0.2999 1.8085 37 1 3.2295 2.6237 3.7545 38 1 4.8458 2.2049 3.0365 39 1 5.3816 6.6746 1.2071 40 1 -0.3868 -1.5780 -0.9476 41 1 -1.5539 -3.7364 -1.1138 42 1 3.8007 -5.4016 1.2697 43 1 4.1564 -7.9443 1.7927 44 1 1.9128 -9.2406 1.0804 45 1 0.2328 -7.4598 0.1470 46 1 2.9865 -3.6612 0.7035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085657495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:11 Heat of formation + Delta-G solvation = 161.058785 kcal Electronic energy + Delta-G solvation = -28845.683259 eV Core-core repulsion = 24933.473610 eV Total energy + Delta-G solvation = -3912.209649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.07614 -40.80514 -39.40382 -38.02059 -35.81426 -33.77707 -33.10196 -32.23954 -30.06982 -29.21893 -28.79144 -28.27462 -27.15385 -24.93309 -24.07530 -23.10086 -22.82415 -21.16709 -20.51570 -19.89561 -19.23770 -18.60084 -17.36501 -16.86495 -16.72442 -16.31742 -16.02038 -15.66629 -15.52749 -15.16105 -14.93728 -14.28043 -14.15312 -13.85668 -13.82563 -13.60906 -13.39671 -13.30952 -13.09405 -12.74587 -12.62532 -12.47444 -12.33051 -11.88226 -11.73938 -11.50439 -11.20401 -10.74049 -10.50970 -10.43854 -10.25561 -10.23825 -10.07312 -9.88124 -9.77288 -9.44044 -8.96718 -8.59111 -8.54468 -8.53742 -7.05983 -5.92985 -3.32188 0.19776 0.41165 1.97194 2.19851 2.69127 2.72306 2.80922 3.35230 3.42020 3.42150 3.44055 3.84158 4.01278 4.28004 4.42097 4.49790 4.52986 4.69116 4.84521 4.91120 4.97355 5.03210 5.09425 5.12779 5.25086 5.29328 5.31977 5.32976 5.44475 5.51834 5.64288 5.75476 5.86201 5.88970 5.93681 5.98720 6.09276 6.22814 6.36568 6.42987 6.46119 6.53161 6.56058 6.69936 7.02094 7.06163 7.26165 7.30826 7.39222 7.99327 8.34349 8.66861 9.62875 10.31899 11.23827 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.002450 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.158392 B =11427.240187 C =12352.222384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.596 5.596 3 C 0.116 3.884 4 C 0.130 3.870 5 H 0.048 0.952 6 C -0.145 4.145 7 C 0.094 3.906 8 N -0.614 5.614 9 C -0.230 4.230 10 H 0.095 0.905 11 C 0.019 3.981 12 N -0.921 5.921 13 Si 0.888 3.112 14 H -0.285 1.285 15 H -0.300 1.300 16 H -0.267 1.267 17 C 0.553 3.447 18 O -0.514 6.514 19 C -0.049 4.049 20 C -0.185 4.185 21 C 0.130 3.870 22 N -0.493 5.493 23 C 0.347 3.653 24 N -0.396 5.396 25 C -0.014 4.014 26 C -0.181 4.181 27 C -0.197 4.197 28 C 0.010 3.990 29 C -0.131 4.131 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.263 0.737 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.169 0.831 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -24.221 -1.432 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.329 5.329 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.065 0.935 6 C -0.183 4.183 7 C -0.031 4.031 8 N -0.342 5.342 9 C -0.357 4.357 10 H 0.113 0.887 11 C -0.179 4.179 12 N -0.565 5.565 13 Si 0.719 3.281 14 H -0.212 1.212 15 H -0.228 1.228 16 H -0.192 1.192 17 C 0.339 3.661 18 O -0.389 6.389 19 C -0.061 4.061 20 C -0.205 4.205 21 C -0.027 4.027 22 N -0.206 5.206 23 C 0.119 3.881 24 N -0.071 5.071 25 C -0.139 4.139 26 C -0.205 4.205 27 C -0.221 4.221 28 C -0.116 4.116 29 C -0.154 4.154 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.189 0.811 41 H 0.190 0.810 42 H 0.187 0.813 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.186 0.814 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.176 -24.353 -1.655 27.738 hybrid contribution 0.421 1.084 1.137 1.626 sum -12.755 -23.269 -0.518 26.541 Atomic orbital electron populations 1.22575 0.80124 1.04200 1.01863 1.47664 1.06866 1.06237 1.72099 1.21851 0.98089 0.81952 0.98749 1.22498 0.93099 0.89137 0.93038 0.93512 1.23657 0.99616 0.96437 0.98560 1.22914 0.98777 0.90902 0.90464 1.46355 1.35203 1.31190 1.21460 1.18674 1.32856 0.92628 0.91546 0.88746 1.25052 1.00031 0.95020 0.97794 1.69723 1.40403 1.11571 1.34834 0.86779 0.78493 0.75965 0.86903 1.21195 1.22753 1.19226 1.18054 0.87134 0.83046 0.77862 1.90824 1.13158 1.86592 1.48343 1.20268 0.94275 0.93988 0.97539 1.23358 0.94717 1.01532 1.00878 1.22597 0.99755 0.85958 0.94407 1.66826 1.09097 1.32535 1.12151 1.18098 0.89956 0.84713 0.95293 1.41470 1.13121 1.04442 1.48098 1.22016 0.86766 0.99161 1.05936 1.21058 0.99893 0.92645 1.06944 1.21073 0.94798 0.99236 1.06966 1.22049 1.00263 0.82469 1.06791 1.21632 1.01940 0.90059 1.01790 0.91621 0.90375 0.89476 0.88482 0.90392 0.93276 0.88903 0.93697 0.92717 0.92714 0.81115 0.81047 0.81291 0.83772 0.83986 0.81352 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 8.71 59.85 0.52 0.95 16 2 N -0.60 -7.50 2.80 -182.58 -0.51 -8.01 16 3 C 0.12 1.90 5.39 -4.05 -0.02 1.88 16 4 C 0.13 2.44 4.56 -66.87 -0.30 2.13 16 5 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.14 -2.66 7.29 -25.79 -0.19 -2.85 16 7 C 0.09 2.05 5.79 -2.85 -0.02 2.03 16 8 N -0.61 -14.75 3.30 -169.73 -0.56 -15.32 16 9 C -0.23 -6.48 10.97 -15.06 -0.17 -6.64 16 10 H 0.10 2.78 8.06 -52.48 -0.42 2.36 16 11 C 0.02 0.56 5.50 -17.43 -0.10 0.47 16 12 N -0.92 -28.59 13.97 55.49 0.78 -27.82 16 13 Si 0.89 22.78 25.28 -169.99 -4.30 18.48 16 14 H -0.29 -7.24 7.07 56.52 0.40 -6.84 16 15 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 16 H -0.27 -6.54 5.59 56.52 0.32 -6.23 16 17 C 0.55 7.59 7.25 -12.19 -0.09 7.51 16 18 O -0.51 -9.00 14.42 5.35 0.08 -8.92 16 19 C -0.05 -0.53 5.62 -104.68 -0.59 -1.12 16 20 C -0.18 -1.40 7.69 -39.01 -0.30 -1.70 16 21 C 0.13 0.95 11.17 -17.61 -0.20 0.75 16 22 N -0.49 -4.97 9.80 -12.35 -0.12 -5.09 16 23 C 0.35 3.84 7.48 -154.46 -1.16 2.69 16 24 N -0.40 -4.34 2.97 -62.68 -0.19 -4.52 16 25 C -0.01 -0.14 10.72 -16.63 -0.18 -0.31 16 26 C -0.18 -1.69 10.86 -39.76 -0.43 -2.12 16 27 C -0.20 -1.81 10.86 -39.76 -0.43 -2.24 16 28 C 0.01 0.10 11.00 -16.62 -0.18 -0.08 16 29 C -0.13 -1.47 9.05 -38.82 -0.35 -1.82 16 30 H 0.07 0.37 7.26 -51.93 -0.38 -0.01 16 31 H 0.08 0.61 8.11 -51.92 -0.42 0.19 16 32 H 0.09 0.54 4.87 -51.93 -0.25 0.29 16 33 H 0.10 1.88 7.30 -51.93 -0.38 1.50 16 34 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.82 6.51 -51.93 -0.34 1.48 16 37 H 0.05 0.97 6.31 -51.93 -0.33 0.64 16 38 H 0.05 1.23 7.31 -51.93 -0.38 0.85 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 40 H 0.17 0.86 4.13 -52.49 -0.22 0.65 16 41 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.17 1.40 6.98 -52.48 -0.37 1.03 16 43 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.17 1.45 8.04 -52.49 -0.42 1.02 16 46 H 0.15 1.69 6.49 -52.49 -0.34 1.35 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -35.34 370.47 -9.42 -44.76 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.00 Total: 1.33 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.18 Total: -0.48 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.60 Total: -60.75 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.30 Total: 18.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.34 -9.42 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.815 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds