Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99955 * 2 1 4 4 C 1.52992 * 109.47433 * 83.50655 * 3 2 1 5 5 H 1.09005 * 112.96214 * 294.66522 * 4 3 2 6 6 C 1.53940 * 113.77064 * 66.33969 * 4 3 2 7 7 C 1.53948 * 86.29103 * 137.91210 * 6 4 3 8 8 N 1.47576 * 113.77283 * 162.98746 * 4 3 2 9 9 C 1.36937 * 134.49405 * 41.06549 * 8 4 3 10 10 H 1.08004 * 119.99523 * 336.93582 * 9 8 4 11 11 C 1.38812 * 120.00364 * 156.93400 * 9 8 4 12 12 N 1.31625 * 120.00096 * 173.45304 * 11 9 8 13 13 Si 1.86796 * 119.99886 * 353.45575 * 11 9 8 14 14 H 1.48503 * 109.47303 * 85.39217 * 13 11 9 15 15 H 1.48497 * 109.47281 * 205.39347 * 13 11 9 16 16 H 1.48506 * 109.47317 * 325.39382 * 13 11 9 17 17 C 1.34776 * 119.99914 * 180.02562 * 2 1 3 18 18 O 1.21514 * 119.99715 * 184.93067 * 17 2 1 19 19 C 1.48158 * 120.00196 * 4.93340 * 17 2 1 20 20 C 1.39960 * 120.88709 * 20.06700 * 19 17 2 21 21 C 1.38036 * 119.13523 * 179.77203 * 20 19 17 22 22 N 1.31858 * 120.98495 * 0.52107 * 21 20 19 23 23 C 1.32233 * 121.97133 * 359.72664 * 22 21 20 24 24 N 1.39786 * 119.63255 * 180.02562 * 23 22 21 25 25 C 1.36647 * 125.68596 * 179.67879 * 24 23 22 26 26 C 1.34800 * 108.19570 * 179.86642 * 25 24 23 27 27 C 1.40978 * 107.48629 * 0.38942 * 26 25 24 28 28 C 1.34805 * 107.48889 * 359.75366 * 27 26 25 29 29 C 1.38938 * 120.74433 * 0.02562 * 23 22 21 30 30 H 1.08996 * 109.47181 * 84.62963 * 1 2 3 31 31 H 1.09007 * 109.46944 * 324.62847 * 1 2 3 32 32 H 1.08994 * 109.47001 * 204.63149 * 1 2 3 33 33 H 1.09003 * 109.47260 * 203.51148 * 3 2 1 34 34 H 1.09007 * 109.46746 * 323.50273 * 3 2 1 35 35 H 1.08997 * 113.74368 * 252.25667 * 6 4 3 36 36 H 1.09000 * 113.74442 * 23.46052 * 6 4 3 37 37 H 1.08999 * 113.77194 * 90.69637 * 7 6 4 38 38 H 1.09004 * 113.77221 * 221.98487 * 7 6 4 39 39 H 0.97001 * 119.99672 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.43412 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.50739 * 180.22809 * 21 20 19 42 42 H 1.08008 * 125.89751 * 359.97438 * 25 24 23 43 43 H 1.08006 * 126.25746 * 180.10848 * 26 25 24 44 44 H 1.08000 * 126.25878 * 179.79843 * 27 26 25 45 45 H 1.07993 * 125.90910 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.52686 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3113 1.7920 1.4331 5 1 1.3469 2.0565 1.8671 6 6 3.1828 0.9122 2.3476 7 6 3.7657 2.2292 2.8914 8 7 3.3465 2.8293 1.6073 9 6 3.7540 3.9112 0.8734 10 1 3.5615 3.9466 -0.1887 11 6 4.4145 4.9622 1.4946 12 7 4.9197 5.9404 0.7730 13 14 4.5865 4.9885 3.3544 14 1 5.7810 4.2010 3.7523 15 1 4.7415 6.3909 3.8174 16 1 3.3737 4.3945 3.9722 17 6 2.1389 -1.1672 -0.0005 18 8 3.3507 -1.1692 0.0899 19 6 1.4022 -2.4479 -0.1114 20 6 0.1005 -2.4859 -0.6241 21 6 -0.5506 -3.6996 -0.7157 22 7 0.0320 -4.8140 -0.3190 23 6 1.2580 -4.8253 0.1761 24 7 1.8287 -6.0354 0.5813 25 6 3.0826 -6.1906 1.1017 26 6 3.2674 -7.4984 1.3715 27 6 2.0907 -8.1786 0.9972 28 6 1.2275 -7.2609 0.5174 29 6 1.9856 -3.6480 0.2982 30 1 -0.3633 0.0962 -1.0231 31 1 -0.3633 0.8380 0.5949 32 1 -0.3633 -0.9341 0.4283 33 1 3.1953 1.1122 -0.4100 34 1 1.6636 1.9964 -0.6113 35 1 2.6133 0.3468 3.0852 36 1 3.9057 0.2999 1.8085 37 1 3.2295 2.6237 3.7545 38 1 4.8458 2.2049 3.0365 39 1 5.3816 6.6746 1.2071 40 1 -0.3868 -1.5780 -0.9476 41 1 -1.5539 -3.7364 -1.1138 42 1 3.8007 -5.4016 1.2697 43 1 4.1564 -7.9443 1.7927 44 1 1.9128 -9.2406 1.0804 45 1 0.2328 -7.4598 0.1470 46 1 2.9865 -3.6612 0.7035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085657495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = 139.482973 kcal Electronic energy + Delta-G solvation = -28846.618857 eV Core-core repulsion = 24933.473610 eV Total energy + Delta-G solvation = -3913.145247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.79988 -41.70450 -40.44305 -39.50168 -36.87677 -34.65072 -34.32018 -33.84120 -30.97447 -30.36315 -29.94030 -29.71578 -27.98943 -26.00716 -24.94673 -24.77857 -24.14937 -22.04313 -21.23901 -20.99937 -20.66214 -19.43720 -18.79056 -18.21253 -17.54896 -17.37290 -17.11792 -17.09038 -16.44870 -16.34625 -15.80992 -15.63701 -15.33908 -14.96932 -14.83761 -14.58096 -14.48138 -14.35139 -14.12745 -14.07878 -13.82880 -13.63036 -13.29632 -13.23781 -13.01209 -12.81039 -12.58869 -12.32857 -12.05263 -11.86006 -11.76822 -11.44264 -11.26627 -11.15704 -11.00006 -10.95149 -10.64259 -9.79561 -9.27611 -9.26002 -9.02451 -8.15804 -5.50802 -0.55576 -0.31208 1.25364 1.30924 1.33179 1.41172 1.46727 1.74443 1.82619 2.02097 2.41078 2.67647 2.91916 3.14039 3.15923 3.30982 3.56034 3.71240 3.74751 3.85317 4.07843 4.17224 4.22161 4.25898 4.30428 4.35182 4.38030 4.48856 4.52821 4.62103 4.65722 4.66282 4.66899 4.79874 4.85567 4.89015 4.92267 4.96687 5.20281 5.24279 5.27496 5.35281 5.48740 5.54854 5.86147 6.02448 6.15751 6.25897 6.31163 6.51257 6.70580 6.96486 7.43484 8.27383 9.04895 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.002450 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.158392 B =11427.240187 C =12352.222384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.591 5.591 3 C 0.128 3.872 4 C 0.134 3.866 5 H 0.073 0.927 6 C -0.124 4.124 7 C 0.086 3.914 8 N -0.642 5.642 9 C -0.213 4.213 10 H 0.066 0.934 11 C -0.047 4.047 12 N -0.969 5.969 13 Si 0.947 3.053 14 H -0.285 1.285 15 H -0.305 1.305 16 H -0.245 1.245 17 C 0.550 3.450 18 O -0.564 6.564 19 C -0.061 4.061 20 C -0.165 4.165 21 C 0.140 3.860 22 N -0.504 5.504 23 C 0.332 3.668 24 N -0.405 5.405 25 C -0.034 4.034 26 C -0.187 4.187 27 C -0.201 4.201 28 C -0.005 4.005 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.260 0.740 40 H 0.204 0.796 41 H 0.217 0.783 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.179 0.821 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 -26.178 -0.704 31.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.322 5.322 3 C 0.004 3.996 4 C 0.028 3.972 5 H 0.091 0.909 6 C -0.162 4.162 7 C -0.039 4.039 8 N -0.371 5.371 9 C -0.341 4.341 10 H 0.084 0.916 11 C -0.240 4.240 12 N -0.618 5.618 13 Si 0.775 3.225 14 H -0.211 1.211 15 H -0.234 1.234 16 H -0.169 1.169 17 C 0.338 3.662 18 O -0.443 6.443 19 C -0.073 4.073 20 C -0.185 4.185 21 C -0.018 4.018 22 N -0.217 5.217 23 C 0.106 3.894 24 N -0.081 5.081 25 C -0.159 4.159 26 C -0.211 4.211 27 C -0.224 4.224 28 C -0.130 4.130 29 C -0.169 4.169 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.220 0.780 41 H 0.234 0.766 42 H 0.192 0.808 43 H 0.179 0.821 44 H 0.181 0.819 45 H 0.197 0.803 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.755 -26.374 -0.912 31.259 hybrid contribution 1.423 1.578 0.804 2.272 sum -15.332 -24.796 -0.108 29.153 Atomic orbital electron populations 1.22996 0.76662 1.05762 1.04322 1.47648 1.08784 1.04375 1.71403 1.21422 0.97076 0.83908 0.97182 1.22737 0.92974 0.86809 0.94646 0.90930 1.23419 0.99127 0.95040 0.98610 1.23084 0.98360 0.92505 0.89908 1.46532 1.37681 1.30696 1.22202 1.18599 1.31191 0.93291 0.90983 0.91605 1.25755 1.00894 0.95222 1.02159 1.69869 1.42579 1.12797 1.36519 0.85836 0.79182 0.75571 0.81867 1.21135 1.23355 1.16855 1.18512 0.86735 0.84123 0.76824 1.90802 1.15489 1.87354 1.50655 1.20052 0.95637 0.92120 0.99477 1.23701 0.92925 1.03058 0.98793 1.23399 1.01034 0.84843 0.92547 1.66932 1.08590 1.33927 1.12247 1.18179 0.90511 0.84634 0.96099 1.41629 1.13395 1.04757 1.48352 1.22307 0.87080 0.99905 1.06564 1.21392 1.00659 0.92493 1.06585 1.21410 0.94465 1.00237 1.06334 1.22368 1.00978 0.82428 1.07251 1.21567 1.01789 0.90697 1.02828 0.88478 0.89659 0.87297 0.92335 0.89526 0.89920 0.90523 0.92411 0.94137 0.93083 0.77978 0.76624 0.80766 0.82071 0.81938 0.80332 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 8.71 127.77 1.11 1.59 16 2 N -0.59 -13.55 2.80 -849.84 -2.38 -15.92 16 3 C 0.13 4.09 5.39 86.38 0.47 4.56 16 4 C 0.13 4.81 4.56 45.09 0.21 5.01 16 5 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 6 C -0.12 -4.35 7.29 31.25 0.23 -4.12 16 7 C 0.09 3.60 5.79 86.44 0.50 4.10 16 8 N -0.64 -30.59 3.30 -690.92 -2.28 -32.87 16 9 C -0.21 -12.20 10.97 84.03 0.92 -11.28 16 10 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 11 C -0.05 -2.82 5.50 84.86 0.47 -2.35 16 12 N -0.97 -62.30 13.97 21.65 0.30 -61.99 16 13 Si 0.95 47.41 25.28 68.60 1.73 49.14 16 14 H -0.28 -14.05 7.07 99.48 0.70 -13.35 16 15 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 16 H -0.24 -11.18 5.59 99.48 0.56 -10.62 16 17 C 0.55 14.62 7.25 86.88 0.63 15.25 16 18 O -0.56 -20.37 14.42 -3.76 -0.05 -20.42 16 19 C -0.06 -1.23 5.62 -19.90 -0.11 -1.34 16 20 C -0.17 -1.83 7.69 22.64 0.17 -1.66 16 21 C 0.14 1.43 11.17 84.64 0.95 2.37 16 22 N -0.50 -8.88 9.80 -192.97 -1.89 -10.77 16 23 C 0.33 7.06 7.48 132.80 0.99 8.05 16 24 N -0.41 -8.75 2.97 -352.21 -1.04 -9.80 16 25 C -0.03 -0.68 10.72 83.15 0.89 0.21 16 26 C -0.19 -3.38 10.86 22.15 0.24 -3.14 16 27 C -0.20 -3.47 10.86 22.15 0.24 -3.23 16 28 C 0.00 -0.09 11.00 83.15 0.91 0.82 16 29 C -0.15 -3.23 9.05 22.76 0.21 -3.02 16 30 H 0.10 0.54 7.26 -2.39 -0.02 0.52 16 31 H 0.08 0.91 8.11 -2.38 -0.02 0.89 16 32 H 0.11 0.77 4.87 -2.39 -0.01 0.76 16 33 H 0.06 2.34 7.30 -2.39 -0.02 2.32 16 34 H 0.09 2.60 8.12 -2.38 -0.02 2.58 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.08 3.00 6.51 -2.39 -0.02 2.98 16 37 H 0.06 2.31 6.31 -2.39 -0.02 2.30 16 38 H 0.04 1.80 7.31 -2.38 -0.02 1.79 16 39 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 40 H 0.20 0.88 4.13 -2.91 -0.01 0.87 16 41 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 42 H 0.18 3.10 6.98 -2.91 -0.02 3.08 16 43 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.18 2.84 8.04 -2.91 -0.02 2.82 16 46 H 0.14 3.33 6.49 -2.91 -0.02 3.31 16 Total: -1.00 -81.34 370.47 4.26 -77.08 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.86 Total: 13.74 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 9.02 Total: 11.81 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -7.29 Total: -131.36 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.73 Total: 49.14 kcal Total: -81.34 4.26 -77.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.562 kcal (2) G-P(sol) polarization free energy of solvation -81.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds