Wall clock time and date at job start Sat Apr 11 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00112 * 2 1 4 4 C 1.53004 * 109.47087 * 263.12273 * 3 2 1 5 5 H 1.08999 * 112.96254 * 308.76471 * 4 3 2 6 6 C 1.53945 * 113.76924 * 177.08958 * 4 3 2 7 7 C 1.53951 * 86.28585 * 222.08994 * 6 4 3 8 8 N 1.47576 * 113.77135 * 80.44025 * 4 3 2 9 9 C 1.36939 * 134.49371 * 318.93632 * 8 4 3 10 10 H 1.08004 * 120.00282 * 0.51915 * 9 8 4 11 11 C 1.38815 * 120.00124 * 180.51347 * 9 8 4 12 12 N 1.31622 * 119.99788 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46977 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47145 * 120.00309 * 13 11 9 16 16 H 1.48499 * 109.47005 * 240.00740 * 13 11 9 17 17 C 1.34778 * 119.99346 * 180.02562 * 2 1 3 18 18 O 1.21639 * 119.99114 * 174.72183 * 17 2 1 19 19 C 1.47072 * 120.00514 * 354.71844 * 17 2 1 20 20 C 1.38069 * 126.49368 * 1.86226 * 19 17 2 21 21 C 1.39253 * 107.69475 * 179.97438 * 20 19 17 22 22 N 1.31019 * 108.82804 * 359.97438 * 21 20 19 23 23 N 1.36952 * 126.49487 * 181.54464 * 19 17 2 24 24 C 1.40019 * 126.16500 * 359.97438 * 23 19 17 25 25 C 1.38883 * 120.07232 * 313.80001 * 24 23 19 26 26 C 1.38108 * 119.92439 * 179.76965 * 25 24 23 27 27 C 1.38287 * 120.07195 * 0.52936 * 26 25 24 28 28 C 1.38281 * 120.14309 * 359.70534 * 27 26 25 29 29 C 1.38105 * 120.07391 * 0.03634 * 28 27 26 30 30 H 1.09003 * 109.47036 * 2.34821 * 1 2 3 31 31 H 1.08995 * 109.47235 * 122.35268 * 1 2 3 32 32 H 1.09004 * 109.47108 * 242.35613 * 1 2 3 33 33 H 1.08997 * 109.47035 * 143.12392 * 3 2 1 34 34 H 1.08998 * 109.47069 * 23.12301 * 3 2 1 35 35 H 1.08997 * 113.74101 * 336.43029 * 6 4 3 36 36 H 1.08993 * 113.74212 * 107.63364 * 6 4 3 37 37 H 1.09001 * 113.76782 * 137.91047 * 7 6 4 38 38 H 1.09000 * 113.76570 * 269.19389 * 7 6 4 39 39 H 0.96999 * 120.00156 * 179.97438 * 12 11 9 40 40 H 1.08004 * 126.15256 * 359.97013 * 20 19 17 41 41 H 1.07997 * 125.58750 * 179.97438 * 21 20 19 42 42 H 1.07993 * 120.03427 * 0.02562 * 25 24 23 43 43 H 1.07995 * 119.96274 * 180.22777 * 26 25 24 44 44 H 1.07999 * 119.92580 * 179.71632 * 27 26 25 45 45 H 1.08000 * 119.96632 * 180.02562 * 28 27 26 46 46 H 1.07999 * 120.04221 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6021 1.6240 -1.4322 5 1 3.1129 0.8087 -1.9444 6 6 3.3194 2.9805 -1.5559 7 6 2.4613 3.2063 -2.8140 8 7 1.5164 2.2357 -2.2227 9 6 0.1740 1.9988 -2.3539 10 1 -0.2931 1.2085 -1.7850 11 6 -0.5865 2.7746 -3.2180 12 7 -0.0172 3.7376 -3.9116 13 14 -2.4177 2.4521 -3.3964 14 1 -2.8099 1.3238 -2.5140 15 1 -3.1749 3.6693 -3.0087 16 1 -2.7243 2.1068 -4.8078 17 6 2.1388 -1.1673 -0.0005 18 8 3.3513 -1.1694 -0.0974 19 6 1.4081 -2.4383 0.1161 20 6 0.0385 -2.5937 0.1967 21 6 -0.2277 -3.9571 0.2944 22 7 0.9069 -4.6119 0.2754 23 7 1.9568 -3.6923 0.1594 24 6 3.3216 -3.9995 0.0999 25 6 4.1305 -3.3935 -0.8527 26 6 5.4771 -3.6951 -0.9056 27 6 6.0182 -4.6077 -0.0186 28 6 5.2146 -5.2165 0.9279 29 6 3.8682 -4.9153 0.9896 30 1 -0.3633 1.0268 -0.0421 31 1 -0.3633 -0.5499 -0.8681 32 1 -0.3633 -0.4768 0.9104 33 1 3.0911 1.1723 0.6167 34 1 1.5607 2.0559 0.4036 35 1 3.0958 3.6709 -0.7426 36 1 4.3867 2.8956 -1.7599 37 1 2.0607 4.2166 -2.8970 38 1 2.9306 2.8579 -3.7341 39 1 -0.5485 4.2795 -4.5157 40 1 -0.6945 -1.8006 0.1859 41 1 -1.2087 -4.4018 0.3731 42 1 3.7076 -2.6840 -1.5485 43 1 6.1074 -3.2215 -1.6436 44 1 7.0707 -4.8453 -0.0650 45 1 5.6402 -5.9285 1.6195 46 1 3.2410 -5.3914 1.7287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085676088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:16 Heat of formation + Delta-G solvation = 167.768513 kcal Electronic energy + Delta-G solvation = -30025.800764 eV Core-core repulsion = 26113.882070 eV Total energy + Delta-G solvation = -3911.918694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67567 -39.40089 -38.95464 -37.69736 -35.41099 -33.38133 -32.29996 -31.26098 -30.79799 -29.18658 -28.30723 -27.64919 -26.69463 -23.84001 -23.33888 -23.01244 -22.94429 -21.42694 -20.80049 -19.57612 -19.05461 -17.74925 -16.90019 -16.43648 -16.26983 -15.81719 -15.72662 -15.19018 -14.91008 -14.80527 -14.47619 -13.95173 -13.90634 -13.69186 -13.67490 -13.46066 -13.11392 -12.89445 -12.78967 -12.61820 -11.90045 -11.73373 -11.52322 -11.43397 -11.21568 -11.14684 -11.00713 -10.74545 -10.69179 -10.48598 -10.14685 -10.03057 -9.78796 -9.67922 -9.35050 -9.12585 -8.94575 -8.80667 -8.35394 -8.29178 -6.86409 -5.77473 -3.08696 0.68274 1.30896 1.50622 2.12947 2.49258 3.22030 3.30880 3.34421 3.36617 3.42805 3.64107 4.38692 4.41070 4.57075 4.82513 4.83473 5.02127 5.11625 5.14174 5.28408 5.32594 5.37638 5.46822 5.48909 5.55893 5.57687 5.66780 5.70248 5.82565 5.90305 5.91930 6.03075 6.09008 6.20832 6.22346 6.24637 6.40086 6.43651 6.47954 6.56728 6.61705 6.70061 6.88822 7.05823 7.25787 7.39948 7.45101 7.56248 7.59122 7.97779 8.22245 9.02488 9.70947 10.63216 11.39971 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003662 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.234925 B = 7643.432642 C = 8991.453577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.577 5.577 3 C 0.122 3.878 4 C 0.128 3.872 5 H 0.048 0.952 6 C -0.159 4.159 7 C 0.160 3.840 8 N -0.603 5.603 9 C -0.227 4.227 10 H 0.090 0.910 11 C -0.009 4.009 12 N -0.918 5.918 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.573 3.427 18 O -0.532 6.532 19 C 0.045 3.955 20 C -0.236 4.236 21 C 0.042 3.958 22 N -0.273 5.273 23 N -0.296 5.296 24 C 0.138 3.862 25 C -0.063 4.063 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.252 0.748 40 H 0.183 0.817 41 H 0.193 0.807 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -13.173 10.832 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.307 5.307 3 C -0.001 4.001 4 C 0.020 3.980 5 H 0.066 0.934 6 C -0.198 4.198 7 C 0.035 3.965 8 N -0.329 5.329 9 C -0.355 4.355 10 H 0.107 0.893 11 C -0.206 4.206 12 N -0.566 5.566 13 Si 0.733 3.267 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.359 3.641 18 O -0.410 6.410 19 C -0.083 4.083 20 C -0.266 4.266 21 C -0.142 4.142 22 N -0.094 5.094 23 N -0.075 5.075 24 C 0.047 3.953 25 C -0.084 4.084 26 C -0.128 4.128 27 C -0.131 4.131 28 C -0.138 4.138 29 C -0.124 4.124 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.200 0.800 41 H 0.210 0.790 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.782 -14.235 10.696 19.053 hybrid contribution -1.694 0.564 -0.461 1.844 sum 5.088 -13.671 10.235 17.819 Atomic orbital electron populations 1.22682 0.79272 1.05338 1.00801 1.47444 1.07434 1.05343 1.70487 1.22062 0.96276 0.82860 0.98863 1.22590 0.89743 0.94640 0.91001 0.93433 1.23764 0.97610 0.97266 1.01126 1.22191 0.86861 0.96001 0.91477 1.46198 1.02061 1.35866 1.48780 1.19379 0.81450 1.13966 1.20693 0.89277 1.24793 0.97816 0.98758 0.99208 1.69836 1.34276 1.22349 1.30118 0.86202 0.85463 0.77398 0.77638 1.20365 1.21783 1.21892 1.16980 0.86544 0.82381 0.78204 1.90827 1.12987 1.86684 1.50474 1.21282 0.93548 0.87064 1.06411 1.23088 0.94191 0.98275 1.11001 1.23926 0.97447 0.92962 0.99904 1.77464 0.94192 1.14965 1.22802 1.45973 1.04378 1.02804 1.54297 1.17370 0.78883 1.00807 0.98205 1.21148 0.93961 0.97062 0.96196 1.21000 0.94199 0.97915 0.99708 1.21244 0.99966 0.96592 0.95334 1.20939 0.92767 1.00709 0.99410 1.20969 0.95595 0.97880 0.97936 0.88221 0.90816 0.91869 0.90677 0.89357 0.90731 0.92962 0.90998 0.95867 0.93818 0.80033 0.79033 0.84928 0.85157 0.85623 0.85406 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 6.69 59.85 0.40 1.28 16 2 N -0.58 -9.47 2.89 -182.98 -0.53 -9.99 16 3 C 0.12 2.08 5.16 -4.04 -0.02 2.06 16 4 C 0.13 2.56 4.46 -66.86 -0.30 2.26 16 5 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 6 C -0.16 -2.94 7.86 -25.79 -0.20 -3.14 16 7 C 0.16 3.70 7.51 -2.85 -0.02 3.67 16 8 N -0.60 -14.46 3.59 -169.70 -0.61 -15.07 16 9 C -0.23 -5.79 10.08 -15.06 -0.15 -5.95 16 10 H 0.09 2.06 3.82 -52.48 -0.20 1.86 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -26.45 11.41 55.49 0.63 -25.82 16 13 Si 0.90 20.93 29.55 -169.99 -5.02 15.91 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 C 0.57 9.87 7.40 -12.68 -0.09 9.78 16 18 O -0.53 -10.01 12.50 5.24 0.07 -9.94 16 19 C 0.04 0.71 6.72 -82.06 -0.55 0.16 16 20 C -0.24 -3.11 8.79 -39.27 -0.35 -3.46 16 21 C 0.04 0.51 11.96 -17.52 -0.21 0.30 16 22 N -0.27 -4.06 12.43 30.53 0.38 -3.68 16 23 N -0.30 -4.73 3.72 -7.08 -0.03 -4.76 16 24 C 0.14 2.11 5.92 -83.64 -0.50 1.62 16 25 C -0.06 -0.96 7.37 -39.39 -0.29 -1.25 16 26 C -0.11 -1.35 10.04 -39.61 -0.40 -1.75 16 27 C -0.11 -1.18 10.04 -39.55 -0.40 -1.58 16 28 C -0.12 -1.27 10.04 -39.61 -0.40 -1.67 16 29 C -0.10 -1.35 9.89 -39.39 -0.39 -1.74 16 30 H 0.10 1.54 6.28 -51.93 -0.33 1.21 16 31 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 32 H 0.06 0.71 6.28 -51.93 -0.33 0.38 16 33 H 0.07 1.21 7.72 -51.93 -0.40 0.81 16 34 H 0.09 1.47 7.80 -51.93 -0.40 1.06 16 35 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.82 7.20 -51.93 -0.37 1.44 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.18 2.01 4.07 -52.48 -0.21 1.80 16 41 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.13 2.24 6.69 -52.49 -0.35 1.89 16 43 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -32.53 370.04 -9.35 -41.88 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.86 Total: 5.66 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.96 Total: 0.24 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.15 Total: -59.32 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.53 -9.35 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085676088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.646 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds