Wall clock time and date at job start Sat Apr 11 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00112 * 2 1 4 4 C 1.53004 * 109.47087 * 263.12273 * 3 2 1 5 5 H 1.08999 * 112.96254 * 308.76471 * 4 3 2 6 6 C 1.53945 * 113.76924 * 177.08958 * 4 3 2 7 7 C 1.53951 * 86.28585 * 222.08994 * 6 4 3 8 8 N 1.47576 * 113.77135 * 80.44025 * 4 3 2 9 9 C 1.36939 * 134.49371 * 318.93632 * 8 4 3 10 10 H 1.08004 * 120.00282 * 0.51915 * 9 8 4 11 11 C 1.38815 * 120.00124 * 180.51347 * 9 8 4 12 12 N 1.31622 * 119.99788 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46977 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47145 * 120.00309 * 13 11 9 16 16 H 1.48499 * 109.47005 * 240.00740 * 13 11 9 17 17 C 1.34778 * 119.99346 * 180.02562 * 2 1 3 18 18 O 1.21639 * 119.99114 * 174.72183 * 17 2 1 19 19 C 1.47072 * 120.00514 * 354.71844 * 17 2 1 20 20 C 1.38069 * 126.49368 * 1.86226 * 19 17 2 21 21 C 1.39253 * 107.69475 * 179.97438 * 20 19 17 22 22 N 1.31019 * 108.82804 * 359.97438 * 21 20 19 23 23 N 1.36952 * 126.49487 * 181.54464 * 19 17 2 24 24 C 1.40019 * 126.16500 * 359.97438 * 23 19 17 25 25 C 1.38883 * 120.07232 * 313.80001 * 24 23 19 26 26 C 1.38108 * 119.92439 * 179.76965 * 25 24 23 27 27 C 1.38287 * 120.07195 * 0.52936 * 26 25 24 28 28 C 1.38281 * 120.14309 * 359.70534 * 27 26 25 29 29 C 1.38105 * 120.07391 * 0.03634 * 28 27 26 30 30 H 1.09003 * 109.47036 * 2.34821 * 1 2 3 31 31 H 1.08995 * 109.47235 * 122.35268 * 1 2 3 32 32 H 1.09004 * 109.47108 * 242.35613 * 1 2 3 33 33 H 1.08997 * 109.47035 * 143.12392 * 3 2 1 34 34 H 1.08998 * 109.47069 * 23.12301 * 3 2 1 35 35 H 1.08997 * 113.74101 * 336.43029 * 6 4 3 36 36 H 1.08993 * 113.74212 * 107.63364 * 6 4 3 37 37 H 1.09001 * 113.76782 * 137.91047 * 7 6 4 38 38 H 1.09000 * 113.76570 * 269.19389 * 7 6 4 39 39 H 0.96999 * 120.00156 * 179.97438 * 12 11 9 40 40 H 1.08004 * 126.15256 * 359.97013 * 20 19 17 41 41 H 1.07997 * 125.58750 * 179.97438 * 21 20 19 42 42 H 1.07993 * 120.03427 * 0.02562 * 25 24 23 43 43 H 1.07995 * 119.96274 * 180.22777 * 26 25 24 44 44 H 1.07999 * 119.92580 * 179.71632 * 27 26 25 45 45 H 1.08000 * 119.96632 * 180.02562 * 28 27 26 46 46 H 1.07999 * 120.04221 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6021 1.6240 -1.4322 5 1 3.1129 0.8087 -1.9444 6 6 3.3194 2.9805 -1.5559 7 6 2.4613 3.2063 -2.8140 8 7 1.5164 2.2357 -2.2227 9 6 0.1740 1.9988 -2.3539 10 1 -0.2931 1.2085 -1.7850 11 6 -0.5865 2.7746 -3.2180 12 7 -0.0172 3.7376 -3.9116 13 14 -2.4177 2.4521 -3.3964 14 1 -2.8099 1.3238 -2.5140 15 1 -3.1749 3.6693 -3.0087 16 1 -2.7243 2.1068 -4.8078 17 6 2.1388 -1.1673 -0.0005 18 8 3.3513 -1.1694 -0.0974 19 6 1.4081 -2.4383 0.1161 20 6 0.0385 -2.5937 0.1967 21 6 -0.2277 -3.9571 0.2944 22 7 0.9069 -4.6119 0.2754 23 7 1.9568 -3.6923 0.1594 24 6 3.3216 -3.9995 0.0999 25 6 4.1305 -3.3935 -0.8527 26 6 5.4771 -3.6951 -0.9056 27 6 6.0182 -4.6077 -0.0186 28 6 5.2146 -5.2165 0.9279 29 6 3.8682 -4.9153 0.9896 30 1 -0.3633 1.0268 -0.0421 31 1 -0.3633 -0.5499 -0.8681 32 1 -0.3633 -0.4768 0.9104 33 1 3.0911 1.1723 0.6167 34 1 1.5607 2.0559 0.4036 35 1 3.0958 3.6709 -0.7426 36 1 4.3867 2.8956 -1.7599 37 1 2.0607 4.2166 -2.8970 38 1 2.9306 2.8579 -3.7341 39 1 -0.5485 4.2795 -4.5157 40 1 -0.6945 -1.8006 0.1859 41 1 -1.2087 -4.4018 0.3731 42 1 3.7076 -2.6840 -1.5485 43 1 6.1074 -3.2215 -1.6436 44 1 7.0707 -4.8453 -0.0650 45 1 5.6402 -5.9285 1.6195 46 1 3.2410 -5.3914 1.7287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085676088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:14 Heat of formation + Delta-G solvation = 148.709220 kcal Electronic energy + Delta-G solvation = -30026.627237 eV Core-core repulsion = 26113.882070 eV Total energy + Delta-G solvation = -3912.745167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.75256 -40.73341 -39.90824 -39.32784 -36.71477 -34.38483 -34.23851 -32.35546 -31.85919 -30.27818 -29.89833 -29.20512 -27.95284 -25.24646 -25.06796 -24.24420 -23.91574 -22.65773 -21.86334 -20.92657 -20.56658 -18.99838 -18.57461 -17.70281 -17.31184 -17.03323 -16.87628 -16.81469 -16.24702 -15.96871 -15.70794 -15.56948 -15.04513 -14.86184 -14.83331 -14.66045 -14.52893 -14.24363 -13.96159 -13.64650 -13.42685 -13.10673 -12.93299 -12.89678 -12.69739 -12.59207 -12.47180 -12.24391 -12.13730 -11.85353 -11.62772 -11.45467 -11.17724 -11.13529 -11.01283 -10.78971 -10.21411 -9.92902 -9.68457 -9.30951 -8.83055 -7.80211 -5.12521 -0.36897 0.35333 0.47691 1.06893 1.49106 1.49516 1.51119 1.59844 2.00459 2.09886 2.52942 2.70135 3.22758 3.36244 3.47649 3.63477 3.89893 3.93277 3.97434 4.12766 4.17969 4.21153 4.27819 4.34808 4.39997 4.41165 4.52368 4.55207 4.57023 4.62103 4.70138 4.77666 4.87952 4.93368 4.98395 5.01196 5.06847 5.27891 5.34349 5.36547 5.44719 5.48133 5.54170 5.65287 5.68902 5.72803 6.00180 6.04997 6.22935 6.45505 6.94378 6.99879 7.72379 8.68340 9.38132 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003662 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.234925 B = 7643.432642 C = 8991.453577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.581 5.581 3 C 0.132 3.868 4 C 0.131 3.869 5 H 0.026 0.974 6 C -0.131 4.131 7 C 0.150 3.850 8 N -0.623 5.623 9 C -0.221 4.221 10 H 0.113 0.887 11 C -0.077 4.077 12 N -0.960 5.960 13 Si 0.962 3.038 14 H -0.245 1.245 15 H -0.297 1.297 16 H -0.308 1.308 17 C 0.569 3.431 18 O -0.555 6.555 19 C 0.014 3.986 20 C -0.225 4.225 21 C 0.050 3.950 22 N -0.294 5.294 23 N -0.308 5.308 24 C 0.110 3.890 25 C -0.088 4.088 26 C -0.117 4.117 27 C -0.105 4.105 28 C -0.110 4.110 29 C -0.115 4.115 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.004 0.996 39 H 0.242 0.758 40 H 0.205 0.795 41 H 0.236 0.764 42 H 0.101 0.899 43 H 0.143 0.857 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.693 -15.311 13.317 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.311 5.311 3 C 0.008 3.992 4 C 0.024 3.976 5 H 0.044 0.956 6 C -0.170 4.170 7 C 0.025 3.975 8 N -0.349 5.349 9 C -0.349 4.349 10 H 0.130 0.870 11 C -0.269 4.269 12 N -0.611 5.611 13 Si 0.792 3.208 14 H -0.168 1.168 15 H -0.224 1.224 16 H -0.236 1.236 17 C 0.356 3.644 18 O -0.435 6.435 19 C -0.113 4.113 20 C -0.254 4.254 21 C -0.134 4.134 22 N -0.116 5.116 23 N -0.087 5.087 24 C 0.020 3.980 25 C -0.109 4.109 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.129 4.129 29 C -0.135 4.135 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.051 0.949 40 H 0.221 0.779 41 H 0.252 0.748 42 H 0.119 0.881 43 H 0.161 0.839 44 H 0.180 0.820 45 H 0.182 0.818 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.618 -16.407 13.222 22.086 hybrid contribution -1.556 1.143 -1.238 2.294 sum 5.062 -15.263 11.984 20.055 Atomic orbital electron populations 1.22795 0.78002 1.05058 1.02448 1.47501 1.08291 1.04870 1.70405 1.21869 0.97171 0.83551 0.96560 1.22616 0.88369 0.94574 0.92037 0.95623 1.23561 0.98304 0.96289 0.98803 1.22133 0.88023 0.94447 0.92926 1.46587 1.02455 1.36530 1.49321 1.20015 0.82392 1.13201 1.19304 0.87006 1.25624 1.02007 0.99296 0.99932 1.70048 1.35485 1.23981 1.31557 0.85224 0.80641 0.77944 0.77037 1.16838 1.22441 1.23580 1.17241 0.86448 0.83060 0.77696 1.90805 1.14110 1.87129 1.51438 1.21330 0.94705 0.86728 1.08580 1.23419 0.93303 0.99406 1.09239 1.24658 0.98347 0.92498 0.97855 1.77430 0.94887 1.15690 1.23563 1.46132 1.04822 1.02859 1.54895 1.17694 0.79060 1.02040 0.99187 1.21031 0.95385 0.97805 0.96643 1.21269 0.93282 0.98462 1.00580 1.21653 1.01690 0.95017 0.93958 1.21393 0.91709 1.00358 0.99404 1.21179 0.96866 0.97678 0.97741 0.89150 0.91299 0.88181 0.89478 0.88529 0.88869 0.90401 0.93712 0.97820 0.94936 0.77891 0.74795 0.88079 0.83933 0.81960 0.81823 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.53 6.69 127.77 0.86 2.39 16 2 N -0.58 -18.44 2.89 -851.07 -2.46 -20.90 16 3 C 0.13 4.32 5.16 86.38 0.45 4.76 16 4 C 0.13 5.21 4.46 45.09 0.20 5.41 16 5 H 0.03 1.16 8.13 -2.39 -0.02 1.15 16 6 C -0.13 -4.75 7.86 31.25 0.25 -4.50 16 7 C 0.15 7.16 7.51 86.44 0.65 7.81 16 8 N -0.62 -30.20 3.59 -690.81 -2.48 -32.68 16 9 C -0.22 -11.26 10.08 84.03 0.85 -10.41 16 10 H 0.11 5.02 3.82 -2.91 -0.01 5.01 16 11 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 12 N -0.96 -57.36 11.41 21.65 0.25 -57.11 16 13 Si 0.96 43.17 29.55 68.60 2.03 45.20 16 14 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 15 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 17 C 0.57 19.57 7.40 86.56 0.64 20.21 16 18 O -0.56 -21.40 12.50 -4.15 -0.05 -21.45 16 19 C 0.01 0.42 6.72 40.62 0.27 0.70 16 20 C -0.22 -5.41 8.79 22.47 0.20 -5.21 16 21 C 0.05 1.09 11.96 85.06 1.02 2.11 16 22 N -0.29 -8.42 12.43 -57.33 -0.71 -9.13 16 23 N -0.31 -9.85 3.72 -176.32 -0.66 -10.50 16 24 C 0.11 3.43 5.92 38.14 0.23 3.65 16 25 C -0.09 -2.77 7.37 22.39 0.16 -2.60 16 26 C -0.12 -2.85 10.04 22.25 0.22 -2.63 16 27 C -0.11 -1.94 10.04 22.29 0.22 -1.72 16 28 C -0.11 -2.07 10.04 22.25 0.22 -1.84 16 29 C -0.11 -2.88 9.89 22.39 0.22 -2.66 16 30 H 0.09 2.57 6.28 -2.39 -0.01 2.56 16 31 H 0.07 1.88 6.24 -2.39 -0.01 1.87 16 32 H 0.10 1.89 6.28 -2.39 -0.01 1.88 16 33 H 0.09 2.67 7.72 -2.39 -0.02 2.65 16 34 H 0.10 3.03 7.80 -2.39 -0.02 3.01 16 35 H 0.09 3.06 8.10 -2.39 -0.02 3.04 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 37 H 0.04 2.36 7.20 -2.39 -0.02 2.35 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.20 3.79 4.07 -2.91 -0.01 3.78 16 41 H 0.24 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.10 3.71 6.69 -2.91 -0.02 3.69 16 43 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 44 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 45 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -74.96 370.04 4.05 -70.90 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.01 Total: 23.92 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 7.12 Total: 11.75 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.06 Total: -130.32 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.96 4.05 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085676088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.612 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds