Wall clock time and date at job start Sat Apr 11 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99650 * 2 1 4 4 C 1.52998 * 109.47418 * 278.55770 * 3 2 1 5 5 H 1.08994 * 112.96393 * 49.21279 * 4 3 2 6 6 C 1.53939 * 113.76903 * 180.89428 * 4 3 2 7 7 C 1.53942 * 86.29136 * 137.90385 * 6 4 3 8 8 N 1.47578 * 86.11738 * 336.39183 * 7 6 4 9 9 C 1.36933 * 134.49124 * 204.63798 * 8 7 6 10 10 H 1.07996 * 120.00135 * 130.43709 * 9 8 7 11 11 C 1.38814 * 120.00136 * 310.44002 * 9 8 7 12 12 N 1.31625 * 119.99924 * 182.73985 * 11 9 8 13 13 Si 1.86799 * 120.00106 * 2.73726 * 11 9 8 14 14 H 1.48498 * 109.47105 * 93.39118 * 13 11 9 15 15 H 1.48495 * 109.47334 * 213.39459 * 13 11 9 16 16 H 1.48504 * 109.47010 * 333.39604 * 13 11 9 17 17 C 1.34777 * 119.99976 * 179.73323 * 2 1 3 18 18 O 1.21638 * 119.99725 * 187.04744 * 17 2 1 19 19 C 1.47071 * 119.99961 * 7.04669 * 17 2 1 20 20 C 1.38072 * 126.49962 * 8.21326 * 19 17 2 21 21 C 1.39252 * 107.69683 * 180.02562 * 20 19 17 22 22 N 1.31014 * 108.82862 * 0.02562 * 21 20 19 23 23 N 1.36953 * 126.49535 * 187.90568 * 19 17 2 24 24 C 1.40020 * 126.16311 * 0.02562 * 23 19 17 25 25 C 1.38887 * 120.07136 * 312.66459 * 24 23 19 26 26 C 1.38102 * 119.92991 * 179.81507 * 25 24 23 27 27 C 1.38284 * 120.06988 * 0.44512 * 26 25 24 28 28 C 1.38288 * 120.14465 * 359.78964 * 27 26 25 29 29 C 1.38105 * 120.07013 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47286 * 95.25065 * 1 2 3 31 31 H 1.09007 * 109.46481 * 215.24576 * 1 2 3 32 32 H 1.08995 * 109.46762 * 335.24498 * 1 2 3 33 33 H 1.08996 * 109.46837 * 38.56183 * 3 2 1 34 34 H 1.09005 * 109.46424 * 158.55555 * 3 2 1 35 35 H 1.09002 * 113.74077 * 252.25233 * 6 4 3 36 36 H 1.09001 * 113.74328 * 23.45363 * 6 4 3 37 37 H 1.09004 * 113.76886 * 90.69342 * 7 6 4 38 38 H 1.08997 * 113.76940 * 221.97218 * 7 6 4 39 39 H 0.96998 * 119.99376 * 180.02562 * 12 11 9 40 40 H 1.08004 * 126.15049 * 0.02562 * 20 19 17 41 41 H 1.08004 * 125.58064 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.03355 * 0.02562 * 25 24 23 43 43 H 1.07995 * 119.96788 * 180.18733 * 26 25 24 44 44 H 1.08003 * 119.93156 * 179.76815 * 27 26 25 45 45 H 1.08004 * 119.96964 * 179.97438 * 28 27 26 46 46 H 1.07995 * 120.03743 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2666 1.8178 -1.4264 5 1 1.2979 1.8271 -1.9259 6 6 3.0379 3.1449 -1.5437 7 6 3.6663 2.5515 -2.8176 8 7 3.3513 1.2316 -2.2374 9 6 3.8608 -0.0302 -2.3903 10 1 4.1196 -0.6170 -1.5214 11 6 4.0447 -0.5551 -3.6622 12 7 4.4835 -1.7874 -3.8084 13 14 3.6694 0.4874 -5.1661 14 1 4.9088 1.1700 -5.6170 15 1 3.1586 -0.3820 -6.2561 16 1 2.6426 1.5031 -4.8206 17 6 2.1389 -1.1672 0.0054 18 8 3.3484 -1.1705 0.1347 19 6 1.4119 -2.4368 -0.1449 20 6 0.0750 -2.5857 -0.4562 21 6 -0.2003 -3.9501 -0.4985 22 7 0.8980 -4.6116 -0.2293 23 7 1.9340 -3.6955 -0.0084 24 6 3.2628 -4.0097 0.3015 25 6 4.3019 -3.3833 -0.3744 26 6 5.6115 -3.6926 -0.0637 27 6 5.8887 -4.6316 0.9129 28 6 4.8563 -5.2607 1.5844 29 6 3.5446 -4.9523 1.2818 30 1 -0.3634 -0.0940 -1.0233 31 1 -0.3632 -0.8394 0.5931 32 1 -0.3633 0.9332 0.4303 33 1 1.6832 1.9851 0.6406 34 1 3.2076 1.1051 0.3757 35 1 2.3996 4.0085 -1.7305 36 1 3.7515 3.3106 -0.7366 37 1 3.1096 2.7756 -3.7276 38 1 4.7342 2.7478 -2.9132 39 1 4.6124 -2.1540 -4.6972 40 1 -0.6303 -1.7875 -0.6348 41 1 -1.1620 -4.3906 -0.7165 42 1 4.0860 -2.6526 -1.1399 43 1 6.4199 -3.2037 -0.5868 44 1 6.9136 -4.8746 1.1514 45 1 5.0761 -5.9940 2.3463 46 1 2.7388 -5.4442 1.8062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085676089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:20 Heat of formation + Delta-G solvation = 171.928136 kcal Electronic energy + Delta-G solvation = -31086.894785 eV Core-core repulsion = 27175.156466 eV Total energy + Delta-G solvation = -3911.738319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.29566 -39.16543 -38.46498 -37.71893 -35.24241 -32.96105 -32.24547 -30.89425 -30.39534 -28.80567 -28.43813 -27.82524 -26.53587 -23.71120 -23.04092 -22.75848 -22.44146 -21.22734 -20.49835 -19.25543 -19.14474 -17.44181 -16.74790 -16.27346 -15.87986 -15.53975 -15.48813 -15.10202 -14.75055 -14.59214 -14.28912 -13.66502 -13.60593 -13.49421 -13.36349 -13.04573 -12.98887 -12.63639 -12.49007 -12.20952 -12.16016 -11.88699 -11.69574 -11.42850 -11.23931 -11.06644 -10.74607 -10.71548 -10.41834 -10.36584 -9.94325 -9.81923 -9.65804 -9.61592 -9.25122 -8.70248 -8.46878 -8.40558 -8.13241 -7.86103 -6.51794 -5.88836 -3.49991 1.14552 1.85692 1.95731 2.52978 2.82619 3.34844 3.44252 3.46034 3.47189 3.73997 4.16839 4.56450 4.67127 4.86013 4.92241 5.24472 5.25473 5.29177 5.33338 5.43503 5.47898 5.51678 5.55552 5.65024 5.73007 5.80134 5.82475 5.83795 5.94071 5.96255 6.02558 6.13773 6.17523 6.22188 6.43558 6.46361 6.55181 6.62692 6.69591 6.73637 6.92606 6.97535 7.02000 7.10423 7.23957 7.55789 7.71857 7.86847 7.91463 8.38037 8.60454 9.11897 9.73421 10.55017 11.22875 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.005271 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.461320 B = 5311.067481 C = 6193.237692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.595 5.595 3 C 0.123 3.877 4 C 0.116 3.884 5 H 0.046 0.954 6 C -0.143 4.143 7 C 0.089 3.911 8 N -0.605 5.605 9 C -0.246 4.246 10 H 0.117 0.883 11 C 0.037 3.963 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.287 1.287 15 H -0.301 1.301 16 H -0.260 1.260 17 C 0.582 3.418 18 O -0.491 6.491 19 C 0.061 3.939 20 C -0.248 4.248 21 C 0.036 3.964 22 N -0.277 5.277 23 N -0.284 5.284 24 C 0.121 3.879 25 C -0.046 4.046 26 C -0.106 4.106 27 C -0.114 4.114 28 C -0.132 4.132 29 C -0.107 4.107 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.168 0.832 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 1.064 10.427 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.328 5.328 3 C 0.000 4.000 4 C 0.009 3.991 5 H 0.063 0.937 6 C -0.182 4.182 7 C -0.035 4.035 8 N -0.334 5.334 9 C -0.374 4.374 10 H 0.134 0.866 11 C -0.164 4.164 12 N -0.545 5.545 13 Si 0.707 3.293 14 H -0.214 1.214 15 H -0.229 1.229 16 H -0.185 1.185 17 C 0.368 3.632 18 O -0.365 6.365 19 C -0.068 4.068 20 C -0.278 4.278 21 C -0.147 4.147 22 N -0.099 5.099 23 N -0.061 5.061 24 C 0.032 3.968 25 C -0.066 4.066 26 C -0.125 4.125 27 C -0.133 4.133 28 C -0.151 4.151 29 C -0.127 4.127 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.189 0.811 41 H 0.205 0.795 42 H 0.186 0.814 43 H 0.149 0.851 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.417 -0.460 10.517 12.328 hybrid contribution -0.820 1.243 -1.597 2.183 sum -7.237 0.782 8.920 11.513 Atomic orbital electron populations 1.22352 0.80504 1.03033 1.01834 1.47200 1.06300 1.05608 1.73681 1.21847 0.98057 0.82525 0.97555 1.22789 0.93261 0.90943 0.92148 0.93699 1.23552 0.99429 0.95751 0.99486 1.23024 0.98349 0.87554 0.94582 1.46146 1.32975 1.03171 1.51065 1.19398 1.35992 0.88194 0.93815 0.86627 1.25885 0.97783 0.94514 0.98218 1.69733 1.48597 1.13490 1.22669 0.86869 0.78839 0.80392 0.83166 1.21409 1.22877 1.18517 1.16730 0.86410 0.81975 0.78064 1.90791 1.12831 1.86086 1.46808 1.21310 0.93789 0.87192 1.04485 1.22611 0.94951 0.97784 1.12443 1.23777 0.97633 0.92878 1.00431 1.77427 0.95117 1.15404 1.21954 1.45924 1.06721 1.02571 1.50917 1.17460 0.79447 1.01306 0.98629 1.21848 0.91014 0.96396 0.97348 1.21079 0.96519 0.97410 0.97467 1.21246 0.98926 0.96693 0.96424 1.20808 0.91812 1.01296 1.01182 1.20875 0.97287 0.97930 0.96579 0.92212 0.90065 0.91219 0.91439 0.88719 0.92834 0.90343 0.94190 0.93302 0.92908 0.81127 0.79535 0.81426 0.85099 0.86125 0.85960 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.67 59.85 0.52 1.30 16 2 N -0.59 -9.97 2.88 -182.98 -0.53 -10.50 16 3 C 0.12 2.03 5.44 -4.04 -0.02 2.01 16 4 C 0.12 2.13 4.51 -66.87 -0.30 1.83 16 5 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.14 -2.33 7.86 -25.81 -0.20 -2.53 16 7 C 0.09 1.83 6.66 -2.98 -0.02 1.81 16 8 N -0.61 -14.15 2.90 -170.77 -0.50 -14.64 16 9 C -0.25 -6.75 10.08 -15.06 -0.15 -6.91 16 10 H 0.12 3.40 3.76 -52.49 -0.20 3.20 16 11 C 0.04 1.06 5.50 -17.43 -0.10 0.97 16 12 N -0.90 -27.08 13.97 55.49 0.78 -26.30 16 13 Si 0.88 22.46 26.52 -169.99 -4.51 17.96 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.30 -7.92 7.11 56.52 0.40 -7.51 16 16 H -0.26 -6.38 5.35 56.52 0.30 -6.07 16 17 C 0.58 11.77 6.79 -12.68 -0.09 11.68 16 18 O -0.49 -11.37 9.15 5.24 0.05 -11.33 16 19 C 0.06 1.18 6.60 -82.06 -0.54 0.64 16 20 C -0.25 -3.84 8.71 -39.27 -0.34 -4.18 16 21 C 0.04 0.54 11.96 -17.52 -0.21 0.33 16 22 N -0.28 -5.10 12.44 30.53 0.38 -4.72 16 23 N -0.28 -5.72 3.72 -7.08 -0.03 -5.75 16 24 C 0.12 2.47 5.94 -83.64 -0.50 1.97 16 25 C -0.05 -1.02 7.39 -39.39 -0.29 -1.31 16 26 C -0.11 -2.02 10.04 -39.61 -0.40 -2.42 16 27 C -0.11 -1.78 10.04 -39.55 -0.40 -2.18 16 28 C -0.13 -1.98 10.04 -39.61 -0.40 -2.38 16 29 C -0.11 -1.83 9.90 -39.39 -0.39 -2.22 16 30 H 0.06 0.71 7.28 -51.93 -0.38 0.34 16 31 H 0.08 0.87 5.44 -51.92 -0.28 0.59 16 32 H 0.07 0.64 7.93 -51.93 -0.41 0.22 16 33 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 34 H 0.09 1.82 7.12 -51.93 -0.37 1.45 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.04 0.85 5.84 -51.93 -0.30 0.54 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.17 2.05 4.49 -52.48 -0.24 1.82 16 41 H 0.19 1.92 8.06 -52.48 -0.42 1.49 16 42 H 0.17 4.43 5.73 -52.49 -0.30 4.13 16 43 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 44 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 45 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 46 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -34.18 364.00 -8.63 -42.80 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.93 Total: 8.56 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.82 Total: -1.57 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.11 Total: -61.91 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.05 Total: -11.33 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.51 Total: 17.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.18 -8.63 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085676089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.733 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds