Wall clock time and date at job start Sat Apr 11 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99650 * 2 1 4 4 C 1.52998 * 109.47418 * 278.55770 * 3 2 1 5 5 H 1.08994 * 112.96393 * 49.21279 * 4 3 2 6 6 C 1.53939 * 113.76903 * 180.89428 * 4 3 2 7 7 C 1.53942 * 86.29136 * 137.90385 * 6 4 3 8 8 N 1.47578 * 86.11738 * 336.39183 * 7 6 4 9 9 C 1.36933 * 134.49124 * 204.63798 * 8 7 6 10 10 H 1.07996 * 120.00135 * 130.43709 * 9 8 7 11 11 C 1.38814 * 120.00136 * 310.44002 * 9 8 7 12 12 N 1.31625 * 119.99924 * 182.73985 * 11 9 8 13 13 Si 1.86799 * 120.00106 * 2.73726 * 11 9 8 14 14 H 1.48498 * 109.47105 * 93.39118 * 13 11 9 15 15 H 1.48495 * 109.47334 * 213.39459 * 13 11 9 16 16 H 1.48504 * 109.47010 * 333.39604 * 13 11 9 17 17 C 1.34777 * 119.99976 * 179.73323 * 2 1 3 18 18 O 1.21638 * 119.99725 * 187.04744 * 17 2 1 19 19 C 1.47071 * 119.99961 * 7.04669 * 17 2 1 20 20 C 1.38072 * 126.49962 * 8.21326 * 19 17 2 21 21 C 1.39252 * 107.69683 * 180.02562 * 20 19 17 22 22 N 1.31014 * 108.82862 * 0.02562 * 21 20 19 23 23 N 1.36953 * 126.49535 * 187.90568 * 19 17 2 24 24 C 1.40020 * 126.16311 * 0.02562 * 23 19 17 25 25 C 1.38887 * 120.07136 * 312.66459 * 24 23 19 26 26 C 1.38102 * 119.92991 * 179.81507 * 25 24 23 27 27 C 1.38284 * 120.06988 * 0.44512 * 26 25 24 28 28 C 1.38288 * 120.14465 * 359.78964 * 27 26 25 29 29 C 1.38105 * 120.07013 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47286 * 95.25065 * 1 2 3 31 31 H 1.09007 * 109.46481 * 215.24576 * 1 2 3 32 32 H 1.08995 * 109.46762 * 335.24498 * 1 2 3 33 33 H 1.08996 * 109.46837 * 38.56183 * 3 2 1 34 34 H 1.09005 * 109.46424 * 158.55555 * 3 2 1 35 35 H 1.09002 * 113.74077 * 252.25233 * 6 4 3 36 36 H 1.09001 * 113.74328 * 23.45363 * 6 4 3 37 37 H 1.09004 * 113.76886 * 90.69342 * 7 6 4 38 38 H 1.08997 * 113.76940 * 221.97218 * 7 6 4 39 39 H 0.96998 * 119.99376 * 180.02562 * 12 11 9 40 40 H 1.08004 * 126.15049 * 0.02562 * 20 19 17 41 41 H 1.08004 * 125.58064 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.03355 * 0.02562 * 25 24 23 43 43 H 1.07995 * 119.96788 * 180.18733 * 26 25 24 44 44 H 1.08003 * 119.93156 * 179.76815 * 27 26 25 45 45 H 1.08004 * 119.96964 * 179.97438 * 28 27 26 46 46 H 1.07995 * 120.03743 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2666 1.8178 -1.4264 5 1 1.2979 1.8271 -1.9259 6 6 3.0379 3.1449 -1.5437 7 6 3.6663 2.5515 -2.8176 8 7 3.3513 1.2316 -2.2374 9 6 3.8608 -0.0302 -2.3903 10 1 4.1196 -0.6170 -1.5214 11 6 4.0447 -0.5551 -3.6622 12 7 4.4835 -1.7874 -3.8084 13 14 3.6694 0.4874 -5.1661 14 1 4.9088 1.1700 -5.6170 15 1 3.1586 -0.3820 -6.2561 16 1 2.6426 1.5031 -4.8206 17 6 2.1389 -1.1672 0.0054 18 8 3.3484 -1.1705 0.1347 19 6 1.4119 -2.4368 -0.1449 20 6 0.0750 -2.5857 -0.4562 21 6 -0.2003 -3.9501 -0.4985 22 7 0.8980 -4.6116 -0.2293 23 7 1.9340 -3.6955 -0.0084 24 6 3.2628 -4.0097 0.3015 25 6 4.3019 -3.3833 -0.3744 26 6 5.6115 -3.6926 -0.0637 27 6 5.8887 -4.6316 0.9129 28 6 4.8563 -5.2607 1.5844 29 6 3.5446 -4.9523 1.2818 30 1 -0.3634 -0.0940 -1.0233 31 1 -0.3632 -0.8394 0.5931 32 1 -0.3633 0.9332 0.4303 33 1 1.6832 1.9851 0.6406 34 1 3.2076 1.1051 0.3757 35 1 2.3996 4.0085 -1.7305 36 1 3.7515 3.3106 -0.7366 37 1 3.1096 2.7756 -3.7276 38 1 4.7342 2.7478 -2.9132 39 1 4.6124 -2.1540 -4.6972 40 1 -0.6303 -1.7875 -0.6348 41 1 -1.1620 -4.3906 -0.7165 42 1 4.0860 -2.6526 -1.1399 43 1 6.4199 -3.2037 -0.5868 44 1 6.9136 -4.8746 1.1514 45 1 5.0761 -5.9940 2.3463 46 1 2.7388 -5.4442 1.8062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085676089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:19 Heat of formation + Delta-G solvation = 149.303475 kcal Electronic energy + Delta-G solvation = -31087.875864 eV Core-core repulsion = 27175.156466 eV Total energy + Delta-G solvation = -3912.719398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.61447 -40.59932 -39.82264 -39.27600 -36.60645 -34.36456 -34.24216 -32.25820 -31.77565 -30.34628 -30.01891 -29.22877 -27.72978 -25.16233 -24.83231 -24.17279 -23.81127 -22.59040 -21.79248 -20.91744 -20.49368 -18.91299 -18.49992 -17.72916 -17.25305 -17.08789 -16.83893 -16.67471 -16.20804 -15.88718 -15.67494 -15.36461 -14.98511 -14.85970 -14.70442 -14.61473 -14.37984 -14.21419 -13.97794 -13.79719 -13.55867 -13.45724 -13.05226 -12.84985 -12.72606 -12.55267 -12.41476 -12.15454 -11.95398 -11.66915 -11.61056 -11.46392 -11.44247 -10.97913 -10.83405 -10.59544 -10.05846 -9.81559 -9.47221 -9.21132 -8.42898 -8.00826 -5.62136 -0.21770 0.45217 0.59247 1.22193 1.27121 1.30762 1.40435 1.61265 2.15515 2.34922 2.46917 2.78781 3.11299 3.24828 3.49328 3.73860 3.92709 3.96277 4.07268 4.22252 4.27615 4.29308 4.36596 4.43840 4.46474 4.46926 4.54934 4.65625 4.67148 4.72231 4.75985 4.82714 4.84623 4.95699 4.98178 5.07812 5.11046 5.14058 5.39232 5.43112 5.61436 5.63562 5.66029 5.72930 5.80571 6.01703 6.15975 6.36647 6.42333 6.60189 6.87449 7.32805 7.59945 8.54607 9.12192 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.005271 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.461320 B = 5311.067481 C = 6193.237692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.594 5.594 3 C 0.126 3.874 4 C 0.116 3.884 5 H 0.057 0.943 6 C -0.112 4.112 7 C 0.077 3.923 8 N -0.638 5.638 9 C -0.224 4.224 10 H 0.090 0.910 11 C -0.027 4.027 12 N -0.949 5.949 13 Si 0.932 3.068 14 H -0.291 1.291 15 H -0.315 1.315 16 H -0.237 1.237 17 C 0.567 3.433 18 O -0.535 6.535 19 C 0.022 3.978 20 C -0.230 4.230 21 C 0.047 3.953 22 N -0.305 5.305 23 N -0.307 5.307 24 C 0.104 3.896 25 C -0.078 4.078 26 C -0.127 4.127 27 C -0.103 4.103 28 C -0.115 4.115 29 C -0.111 4.111 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.251 0.749 40 H 0.208 0.792 41 H 0.238 0.762 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.161 0.839 45 H 0.171 0.829 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.847 2.467 12.398 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.326 5.326 3 C 0.003 3.997 4 C 0.010 3.990 5 H 0.074 0.926 6 C -0.151 4.151 7 C -0.047 4.047 8 N -0.366 5.366 9 C -0.353 4.353 10 H 0.107 0.893 11 C -0.223 4.223 12 N -0.594 5.594 13 Si 0.761 3.239 14 H -0.218 1.218 15 H -0.244 1.244 16 H -0.161 1.161 17 C 0.354 3.646 18 O -0.412 6.412 19 C -0.106 4.106 20 C -0.259 4.259 21 C -0.137 4.137 22 N -0.127 5.127 23 N -0.085 5.085 24 C 0.014 3.986 25 C -0.098 4.098 26 C -0.146 4.146 27 C -0.121 4.121 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.254 0.746 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.178 0.822 45 H 0.188 0.812 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.489 1.017 12.510 15.735 hybrid contribution 0.048 0.865 -2.100 2.272 sum -9.441 1.882 10.409 14.179 Atomic orbital electron populations 1.22656 0.77339 1.05805 1.02635 1.47390 1.08341 1.04543 1.72302 1.21836 0.97328 0.83435 0.97116 1.23025 0.92444 0.91434 0.92092 0.92560 1.23354 0.99025 0.95845 0.96849 1.23167 0.98306 0.86539 0.96721 1.46452 1.35502 1.02704 1.51974 1.19346 1.33726 0.89360 0.92889 0.89270 1.26530 0.99383 0.95495 1.00861 1.69933 1.51883 1.15448 1.22124 0.86003 0.78889 0.79118 0.79884 1.21753 1.24374 1.16113 1.17172 0.86252 0.83359 0.77845 1.90772 1.14767 1.86844 1.48838 1.21643 0.95427 0.86936 1.06614 1.23144 0.93781 0.99138 1.09869 1.24653 0.98388 0.92638 0.98004 1.77365 0.95886 1.16275 1.23129 1.46075 1.06924 1.03142 1.52367 1.17664 0.79572 1.02028 0.99351 1.21458 0.93070 0.97311 0.97980 1.21116 0.95154 0.99116 0.99203 1.21591 1.01287 0.94748 0.94488 1.21347 0.90397 1.00725 1.00825 1.21179 0.98966 0.97144 0.95741 0.91891 0.88863 0.87309 0.86225 0.92279 0.88460 0.89392 0.94135 0.94333 0.93960 0.77537 0.74632 0.86708 0.86625 0.82166 0.81158 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.67 127.77 1.11 2.26 16 2 N -0.59 -19.31 2.88 -851.06 -2.45 -21.76 16 3 C 0.13 3.93 5.44 86.38 0.47 4.40 16 4 C 0.12 4.00 4.51 45.09 0.20 4.21 16 5 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 6 C -0.11 -3.23 7.86 31.25 0.25 -2.99 16 7 C 0.08 3.04 6.66 86.48 0.58 3.61 16 8 N -0.64 -29.91 2.90 -694.20 -2.01 -31.92 16 9 C -0.22 -12.98 10.08 84.03 0.85 -12.13 16 10 H 0.09 5.74 3.76 -2.91 -0.01 5.73 16 11 C -0.03 -1.65 5.50 84.86 0.47 -1.18 16 12 N -0.95 -61.69 13.97 21.65 0.30 -61.39 16 13 Si 0.93 48.18 26.52 68.60 1.82 50.00 16 14 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 15 H -0.31 -16.80 7.11 99.48 0.71 -16.09 16 16 H -0.24 -11.19 5.35 99.48 0.53 -10.66 16 17 C 0.57 23.92 6.79 86.56 0.59 24.51 16 18 O -0.54 -26.97 9.15 -4.15 -0.04 -27.01 16 19 C 0.02 0.86 6.60 40.62 0.27 1.13 16 20 C -0.23 -6.78 8.71 22.47 0.20 -6.58 16 21 C 0.05 1.31 11.96 85.06 1.02 2.32 16 22 N -0.30 -11.24 12.44 -57.33 -0.71 -11.96 16 23 N -0.31 -12.93 3.72 -176.31 -0.66 -13.59 16 24 C 0.10 4.50 5.94 38.14 0.23 4.73 16 25 C -0.08 -3.79 7.39 22.39 0.17 -3.63 16 26 C -0.13 -5.29 10.04 22.25 0.22 -5.07 16 27 C -0.10 -3.19 10.04 22.29 0.22 -2.97 16 28 C -0.11 -3.24 10.04 22.25 0.22 -3.02 16 29 C -0.11 -3.81 9.90 22.39 0.22 -3.59 16 30 H 0.06 1.27 7.28 -2.39 -0.02 1.25 16 31 H 0.09 1.68 5.44 -2.38 -0.01 1.67 16 32 H 0.11 1.39 7.93 -2.39 -0.02 1.37 16 33 H 0.12 2.48 8.00 -2.39 -0.02 2.46 16 34 H 0.06 2.30 7.12 -2.38 -0.02 2.29 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 37 H 0.04 1.62 5.84 -2.38 -0.01 1.60 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.21 4.28 4.49 -2.91 -0.01 4.27 16 41 H 0.24 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.11 6.88 5.73 -2.91 -0.02 6.86 16 43 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 46 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -86.80 364.00 4.36 -82.44 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.84 Total: 29.18 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 7.27 Total: 6.01 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -5.53 Total: -140.62 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.04 Total: -27.01 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.82 Total: 50.00 kcal Total: -86.80 4.36 -82.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085676089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.748 kcal (2) G-P(sol) polarization free energy of solvation -86.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds