Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00220 * 2 1 4 4 C 1.52999 * 109.47137 * 95.22231 * 3 2 1 5 5 H 1.09003 * 112.96956 * 67.26224 * 4 3 2 6 6 C 1.53947 * 113.76727 * 295.58455 * 4 3 2 7 7 C 1.53951 * 86.28979 * 222.09268 * 6 4 3 8 8 N 1.47582 * 113.77000 * 198.94385 * 4 3 2 9 9 C 1.36940 * 134.49003 * 318.93016 * 8 4 3 10 10 H 1.07997 * 120.00105 * 32.84693 * 9 8 4 11 11 C 1.38812 * 119.99952 * 212.85116 * 9 8 4 12 12 N 1.31625 * 119.99977 * 181.57759 * 11 9 8 13 13 Si 1.86802 * 119.99976 * 1.57758 * 11 9 8 14 14 H 1.48504 * 109.47014 * 83.79112 * 13 11 9 15 15 H 1.48498 * 109.47101 * 203.78716 * 13 11 9 16 16 H 1.48493 * 109.47038 * 323.79318 * 13 11 9 17 17 C 1.34778 * 119.99738 * 179.97438 * 2 1 3 18 18 O 1.21581 * 119.99790 * 182.52994 * 17 2 1 19 19 C 1.47661 * 120.00264 * 2.52347 * 17 2 1 20 20 C 1.41532 * 126.44358 * 173.02664 * 19 17 2 21 21 C 1.35359 * 105.55554 * 180.02562 * 20 19 17 22 22 N 1.35857 * 107.12438 * 359.97438 * 21 20 19 23 23 C 1.40114 * 124.95636 * 180.02562 * 22 21 20 24 24 C 1.38857 * 120.06979 * 359.72106 * 23 22 21 25 25 C 1.38118 * 119.92922 * 179.81212 * 24 23 22 26 26 C 1.38285 * 120.06893 * 0.45068 * 25 24 23 27 27 C 1.38282 * 120.13971 * 359.78482 * 26 25 24 28 28 C 1.38120 * 120.06751 * 0.02562 * 27 26 25 29 29 N 1.28473 * 110.08035 * 359.73318 * 22 21 20 30 30 H 1.08998 * 109.47217 * 264.57189 * 1 2 3 31 31 H 1.08993 * 109.47438 * 144.56727 * 1 2 3 32 32 H 1.09002 * 109.46556 * 24.56727 * 1 2 3 33 33 H 1.09001 * 109.47008 * 215.21927 * 3 2 1 34 34 H 1.08997 * 109.47143 * 335.22164 * 3 2 1 35 35 H 1.08994 * 113.74271 * 336.43376 * 6 4 3 36 36 H 1.08999 * 113.74137 * 107.63962 * 6 4 3 37 37 H 1.08996 * 113.77127 * 137.90618 * 7 6 4 38 38 H 1.09000 * 113.76741 * 269.19677 * 7 6 4 39 39 H 0.97001 * 119.99552 * 179.97438 * 12 11 9 40 40 H 1.07996 * 127.22471 * 0.02562 * 20 19 17 41 41 H 1.07999 * 126.43626 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.03538 * 0.03511 * 24 23 22 43 43 H 1.08001 * 119.96247 * 180.21465 * 25 24 23 44 44 H 1.08000 * 119.92884 * 179.76452 * 26 25 24 45 45 H 1.07996 * 119.96831 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.03891 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5663 1.6447 1.4365 5 1 3.2943 0.9658 1.8804 6 6 1.3490 1.9240 2.3367 7 6 2.1549 3.1149 2.8866 8 7 2.9002 3.0717 1.6109 9 6 3.6130 3.9864 0.8826 10 1 3.6249 3.9270 -0.1957 11 6 4.3203 4.9899 1.5303 12 7 4.9801 5.8876 0.8293 13 14 4.3358 5.0663 3.3966 14 1 5.3818 4.1517 3.9208 15 1 4.6291 6.4552 3.8328 16 1 3.0092 4.6527 3.9200 17 6 2.1388 -1.1672 0.0005 18 8 3.3537 -1.1677 0.0470 19 6 1.4016 -2.4454 -0.0552 20 6 1.9653 -3.7355 -0.1999 21 6 0.9170 -4.5918 -0.2003 22 7 -0.2095 -3.8451 -0.0622 23 6 -1.5124 -4.3585 -0.0164 24 6 -1.7251 -5.7267 -0.1211 25 6 -3.0104 -6.2300 -0.0718 26 6 -4.0854 -5.3721 0.0724 27 6 -3.8771 -4.0087 0.1721 28 6 -2.5940 -3.4995 0.1273 29 7 0.0947 -2.6000 0.0264 30 1 -0.3633 -0.0972 1.0230 31 1 -0.3634 -0.8373 -0.5957 32 1 -0.3632 0.9347 -0.4273 33 1 3.1063 1.1635 -0.5927 34 1 1.5712 2.0499 -0.4307 35 1 0.4544 2.2161 1.7868 36 1 1.1593 1.1429 3.0729 37 1 1.5638 4.0208 3.0209 38 1 2.7616 2.8697 3.7583 39 1 5.4741 6.5890 1.2820 40 1 3.0122 -3.9846 -0.2909 41 1 0.9668 -5.6667 -0.2923 42 1 -0.8863 -6.3968 -0.2374 43 1 -3.1763 -7.2943 -0.1496 44 1 -5.0897 -5.7678 0.1069 45 1 -4.7187 -3.3412 0.2842 46 1 -2.4319 -2.4346 0.2047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085693777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = 165.309327 kcal Electronic energy + Delta-G solvation = -28755.839766 eV Core-core repulsion = 24843.814434 eV Total energy + Delta-G solvation = -3912.025332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.16140 -39.79373 -39.29333 -37.92882 -35.19672 -33.97717 -32.19722 -31.97218 -30.83745 -30.00087 -28.55566 -28.22479 -26.47549 -24.66598 -23.78239 -23.09578 -22.79657 -21.56034 -21.19615 -19.62514 -19.06993 -18.56204 -17.04245 -16.76061 -16.64584 -16.40887 -15.81835 -15.42960 -15.31420 -15.15560 -14.91189 -14.16923 -14.09210 -13.87255 -13.78453 -13.38278 -13.24271 -13.01855 -12.77961 -12.70430 -12.56417 -12.24395 -12.16981 -11.82267 -11.71442 -11.47496 -11.00894 -10.76307 -10.73417 -10.50075 -10.24576 -10.10063 -9.88364 -9.66219 -9.60849 -9.50872 -9.21757 -8.69852 -8.60654 -8.23396 -6.85511 -5.87419 -3.33157 0.29715 0.74787 1.65956 1.97435 2.02798 3.16480 3.21656 3.42844 3.47033 3.49524 3.51214 3.95464 4.21913 4.36414 4.44685 4.58400 4.60877 4.71802 4.77879 4.88205 4.95813 5.13594 5.34054 5.35408 5.37144 5.40343 5.40962 5.50221 5.65657 5.69372 5.75331 5.77720 5.88015 5.91420 5.95503 6.04994 6.16942 6.18247 6.23370 6.36495 6.48385 6.55506 6.62827 6.66752 6.77570 7.14955 7.51094 7.58725 7.66644 8.34037 8.42540 8.77461 9.70591 10.45298 11.28916 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.002337 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.210115 B =11978.339599 C =12619.636779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.122 3.878 4 C 0.128 3.872 5 H 0.053 0.947 6 C -0.148 4.148 7 C 0.111 3.889 8 N -0.617 5.617 9 C -0.233 4.233 10 H 0.091 0.909 11 C 0.025 3.975 12 N -0.918 5.918 13 Si 0.870 3.130 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.245 1.245 17 C 0.594 3.406 18 O -0.525 6.525 19 C 0.008 3.992 20 C -0.168 4.168 21 C -0.019 4.019 22 N -0.242 5.242 23 C 0.140 3.860 24 C -0.130 4.130 25 C -0.097 4.097 26 C -0.123 4.123 27 C -0.097 4.097 28 C -0.111 4.111 29 N -0.255 5.255 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.875 -27.183 -2.084 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.325 5.325 3 C -0.001 4.001 4 C 0.021 3.979 5 H 0.071 0.929 6 C -0.186 4.186 7 C -0.013 4.013 8 N -0.346 5.346 9 C -0.360 4.360 10 H 0.108 0.892 11 C -0.174 4.174 12 N -0.562 5.562 13 Si 0.700 3.300 14 H -0.212 1.212 15 H -0.227 1.227 16 H -0.169 1.169 17 C 0.379 3.621 18 O -0.399 6.399 19 C -0.153 4.153 20 C -0.195 4.195 21 C -0.158 4.158 22 N -0.024 5.024 23 C 0.049 3.951 24 C -0.151 4.151 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.116 4.116 28 C -0.130 4.130 29 N -0.088 5.088 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.186 0.814 41 H 0.201 0.799 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.014 -26.250 -2.061 33.688 hybrid contribution 1.024 -0.306 1.006 1.467 sum -19.990 -26.556 -1.056 33.256 Atomic orbital electron populations 1.22102 0.79059 1.03042 1.02349 1.47676 1.07410 1.05844 1.71551 1.21758 0.97131 0.82406 0.98815 1.22587 0.93755 0.88437 0.93097 0.92915 1.23619 0.97703 0.98261 0.99018 1.22892 0.92028 0.95996 0.90415 1.46364 1.61358 1.04272 1.22608 1.18632 1.21561 1.05052 0.90778 0.89183 1.25342 0.95555 0.98466 0.98029 1.69750 1.34353 1.16973 1.35078 0.87146 0.79844 0.76055 0.87002 1.21233 1.22670 1.16934 1.16920 0.86223 0.81571 0.77422 1.90838 1.12565 1.86376 1.50145 1.22235 0.89335 0.95845 1.07900 1.21867 1.00510 0.90459 1.06642 1.22997 0.84925 0.99485 1.08381 1.42918 1.05200 1.04087 1.50184 1.17696 0.80875 0.92968 1.03534 1.20871 0.98754 0.92308 1.03124 1.21013 0.91370 1.00352 0.98796 1.21322 0.99475 0.93528 0.99836 1.21143 0.96374 0.95657 0.98388 1.21035 0.91035 1.00698 1.00257 1.73794 1.16429 0.98930 1.19695 0.92587 0.89552 0.91250 0.90105 0.89610 0.90476 0.92940 0.92794 0.94561 0.92777 0.81373 0.79901 0.84899 0.84817 0.85230 0.84733 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.18 59.85 0.55 1.52 16 2 N -0.59 -9.50 2.77 -182.77 -0.51 -10.01 16 3 C 0.12 2.29 5.30 -4.04 -0.02 2.27 16 4 C 0.13 2.70 4.54 -66.86 -0.30 2.40 16 5 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 6 C -0.15 -2.67 7.36 -25.79 -0.19 -2.86 16 7 C 0.11 2.42 5.52 -2.85 -0.02 2.41 16 8 N -0.62 -15.41 3.19 -169.73 -0.54 -15.95 16 9 C -0.23 -6.79 10.97 -15.06 -0.17 -6.95 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 11 C 0.03 0.76 5.50 -17.43 -0.10 0.67 16 12 N -0.92 -29.16 13.97 55.49 0.78 -28.38 16 13 Si 0.87 22.66 26.53 -169.99 -4.51 18.15 16 14 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 15 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 16 H -0.24 -5.79 4.08 56.52 0.23 -5.56 16 17 C 0.59 10.19 7.64 -12.41 -0.09 10.09 16 18 O -0.53 -10.82 16.62 5.29 0.09 -10.73 16 19 C 0.01 0.12 6.80 -82.76 -0.56 -0.45 16 20 C -0.17 -1.96 10.81 -39.35 -0.43 -2.39 16 21 C -0.02 -0.17 10.78 -16.80 -0.18 -0.35 16 22 N -0.24 -2.52 3.52 -10.55 -0.04 -2.56 16 23 C 0.14 1.18 6.66 -83.61 -0.56 0.62 16 24 C -0.13 -0.78 9.43 -39.40 -0.37 -1.15 16 25 C -0.10 -0.45 10.04 -39.61 -0.40 -0.84 16 26 C -0.12 -0.57 10.04 -39.55 -0.40 -0.97 16 27 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 28 C -0.11 -0.85 9.59 -39.39 -0.38 -1.23 16 29 N -0.26 -3.18 7.71 33.42 0.26 -2.92 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.02 5.41 -51.93 -0.28 0.74 16 32 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 33 H 0.08 1.70 7.62 -51.93 -0.40 1.30 16 34 H 0.09 1.57 7.79 -51.93 -0.40 1.16 16 35 H 0.08 1.27 8.02 -51.93 -0.42 0.86 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 1.17 7.35 -51.93 -0.38 0.79 16 38 H 0.04 0.81 6.65 -51.93 -0.35 0.46 16 39 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 40 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.18 0.89 6.96 -52.49 -0.37 0.53 16 42 H 0.13 0.52 6.65 -52.49 -0.35 0.17 16 43 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.14 1.13 7.65 -52.49 -0.40 0.72 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -36.19 377.70 -9.22 -45.41 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.43 Total: -0.55 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -4.01 Total: 1.85 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.05 Total: -59.82 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.51 Total: 18.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.19 -9.22 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085693777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.720 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds