Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46507 * 119.99748 * 2 1 4 4 C 1.53000 * 109.47052 * 277.09523 * 3 2 1 5 5 H 1.09003 * 112.96200 * 52.93573 * 4 3 2 6 6 C 1.53945 * 113.77131 * 184.61390 * 4 3 2 7 7 C 1.53944 * 86.28963 * 137.90850 * 6 4 3 8 8 N 1.47578 * 113.76938 * 281.11040 * 4 3 2 9 9 C 1.36937 * 134.49294 * 41.06127 * 8 4 3 10 10 H 1.08004 * 120.00265 * 6.87038 * 9 8 4 11 11 C 1.38808 * 119.99835 * 186.88427 * 9 8 4 12 12 N 1.31626 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 120.00015 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46853 * 59.99925 * 13 11 9 15 15 H 1.48502 * 109.47014 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47088 * 299.99889 * 13 11 9 17 17 C 1.34776 * 120.00193 * 179.97438 * 2 1 3 18 18 O 1.21574 * 119.99774 * 184.79446 * 17 2 1 19 19 C 1.47662 * 119.99898 * 4.80229 * 17 2 1 20 20 C 1.41538 * 126.44285 * 173.91177 * 19 17 2 21 21 C 1.35350 * 105.55461 * 179.74122 * 20 19 17 22 22 N 1.35861 * 107.12730 * 0.37231 * 21 20 19 23 23 C 1.40121 * 124.95796 * 179.87034 * 22 21 20 24 24 C 1.38859 * 120.06550 * 359.44811 * 23 22 21 25 25 C 1.38113 * 119.92467 * 180.27037 * 24 23 22 26 26 C 1.38282 * 120.07064 * 0.02562 * 25 24 23 27 27 C 1.38285 * 120.14062 * 359.97438 * 26 25 24 28 28 C 1.38113 * 120.06231 * 0.02562 * 27 26 25 29 29 N 1.28475 * 110.08098 * 359.60600 * 22 21 20 30 30 H 1.09005 * 109.46530 * 264.24003 * 1 2 3 31 31 H 1.08994 * 109.47043 * 24.23732 * 1 2 3 32 32 H 1.08993 * 109.46507 * 144.23929 * 1 2 3 33 33 H 1.09003 * 109.47249 * 37.09189 * 3 2 1 34 34 H 1.08993 * 109.47154 * 157.09693 * 3 2 1 35 35 H 1.09000 * 113.74171 * 252.25481 * 6 4 3 36 36 H 1.08997 * 113.74086 * 23.45133 * 6 4 3 37 37 H 1.09001 * 113.77145 * 90.69461 * 7 6 4 38 38 H 1.09001 * 113.76669 * 221.98157 * 7 6 4 39 39 H 0.96999 * 120.00216 * 180.02562 * 12 11 9 40 40 H 1.07995 * 127.21516 * 359.94458 * 20 19 17 41 41 H 1.08000 * 126.43355 * 180.24618 * 21 20 19 42 42 H 1.07992 * 120.03918 * 0.25291 * 24 23 22 43 43 H 1.07998 * 119.96377 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.93017 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.97003 * 179.97438 * 27 26 25 46 46 H 1.08009 * 120.03195 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2982 1.7996 -1.4315 5 1 1.3312 1.8629 -1.9305 6 6 3.1484 3.0763 -1.5615 7 6 3.7382 2.4342 -2.8303 8 7 3.3443 1.1412 -2.2378 9 6 3.7761 -0.1505 -2.3793 10 1 3.2377 -0.9554 -1.9011 11 6 4.9061 -0.4255 -3.1373 12 7 5.5622 0.5554 -3.7203 13 14 5.4956 -2.1876 -3.3298 14 1 4.4287 -2.9994 -3.9687 15 1 6.7123 -2.2123 -4.1808 16 1 5.8139 -2.7518 -1.9937 17 6 2.1390 -1.1672 0.0005 18 8 3.3515 -1.1689 0.0885 19 6 1.4046 -2.4438 -0.1060 20 6 1.9740 -3.7327 -0.2393 21 6 0.9266 -4.5883 -0.2938 22 7 -0.2050 -3.8416 -0.2059 23 6 -1.5089 -4.3542 -0.2279 24 6 -1.7169 -5.7209 -0.3583 25 6 -3.0035 -6.2225 -0.3852 26 6 -4.0837 -5.3653 -0.2830 27 6 -3.8797 -4.0037 -0.1530 28 6 -2.5956 -3.4960 -0.1255 29 7 0.0951 -2.5974 -0.0942 30 1 -0.3632 -0.1031 1.0226 31 1 -0.3633 0.9370 -0.4219 32 1 -0.3632 -0.8339 -0.6006 33 1 1.6693 1.9934 0.6198 34 1 3.1990 1.1102 0.3999 35 1 2.5634 3.9752 -1.7559 36 1 3.8716 3.2059 -0.7564 37 1 3.1950 2.6833 -3.7419 38 1 4.8159 2.5645 -2.9283 39 1 6.3515 0.3632 -4.2503 40 1 3.0239 -3.9815 -0.2844 41 1 0.9804 -5.6625 -0.3912 42 1 -0.8738 -6.3909 -0.4389 43 1 -3.1661 -7.2853 -0.4871 44 1 -5.0888 -5.7600 -0.3039 45 1 -4.7254 -3.3367 -0.0738 46 1 -2.4369 -2.4325 -0.0243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085693778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = 166.553001 kcal Electronic energy + Delta-G solvation = -29787.937465 eV Core-core repulsion = 25875.966063 eV Total energy + Delta-G solvation = -3911.971402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.86384 -39.54983 -39.03137 -37.42820 -34.88299 -33.72625 -31.91833 -31.76018 -30.57487 -29.71668 -28.14489 -27.59894 -26.19064 -24.31955 -23.54954 -23.11416 -22.45017 -21.15877 -20.93751 -19.13199 -18.88934 -18.32264 -16.80725 -16.61982 -16.55270 -16.09067 -15.53487 -15.23419 -15.05433 -14.75964 -14.43688 -13.99074 -13.72239 -13.57067 -13.55696 -13.42532 -13.05287 -12.87617 -12.58012 -12.42853 -12.17116 -12.01186 -11.54651 -11.43193 -11.25405 -10.90519 -10.71348 -10.56289 -10.46982 -10.35024 -10.25120 -9.83647 -9.52709 -9.44775 -9.41278 -9.24703 -9.03836 -8.51078 -8.35854 -7.95188 -6.59101 -5.47439 -2.77881 0.49976 0.90716 1.97093 2.27452 2.30792 3.39439 3.48571 3.57407 3.60897 3.66811 3.93788 4.18849 4.41375 4.57299 4.65281 4.69946 4.78524 4.93026 4.99206 5.15003 5.28123 5.38592 5.55128 5.56568 5.64611 5.66846 5.76923 5.80711 5.82942 5.88457 5.91058 5.99145 6.04752 6.06898 6.12256 6.16480 6.36259 6.45751 6.48643 6.54272 6.81305 6.87394 6.89289 7.15322 7.45212 7.62799 7.82727 7.86413 8.00608 8.29430 8.81634 9.35422 10.01713 10.86083 11.69339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.003531 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.144620 B = 7928.872799 C = 9167.696855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.600 5.600 3 C 0.117 3.883 4 C 0.123 3.877 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.151 3.849 8 N -0.596 5.596 9 C -0.191 4.191 10 H 0.088 0.912 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.901 3.099 14 H -0.291 1.291 15 H -0.294 1.294 16 H -0.280 1.280 17 C 0.589 3.411 18 O -0.486 6.486 19 C 0.018 3.982 20 C -0.165 4.165 21 C -0.021 4.021 22 N -0.247 5.247 23 C 0.147 3.853 24 C -0.132 4.132 25 C -0.096 4.096 26 C -0.127 4.127 27 C -0.097 4.097 28 C -0.113 4.113 29 N -0.262 5.262 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.019 0.981 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.168 0.832 41 H 0.183 0.817 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.359 -9.397 9.540 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.333 5.333 3 C -0.006 4.006 4 C 0.015 3.985 5 H 0.059 0.941 6 C -0.196 4.196 7 C 0.026 3.974 8 N -0.321 5.321 9 C -0.319 4.319 10 H 0.105 0.895 11 C -0.209 4.209 12 N -0.580 5.580 13 Si 0.732 3.268 14 H -0.218 1.218 15 H -0.220 1.220 16 H -0.206 1.206 17 C 0.374 3.626 18 O -0.357 6.357 19 C -0.144 4.144 20 C -0.192 4.192 21 C -0.160 4.160 22 N -0.028 5.028 23 C 0.056 3.944 24 C -0.153 4.153 25 C -0.115 4.115 26 C -0.146 4.146 27 C -0.116 4.116 28 C -0.133 4.133 29 N -0.095 5.095 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.185 0.815 41 H 0.200 0.800 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.475 -9.087 9.553 24.353 hybrid contribution 0.920 -1.508 -0.504 1.837 sum -19.555 -10.595 9.049 24.011 Atomic orbital electron populations 1.22009 0.79919 1.03219 1.01413 1.47460 1.06667 1.05844 1.73364 1.21937 0.97847 0.82860 0.97970 1.22652 0.93218 0.91358 0.91268 0.94137 1.23778 0.99267 0.95223 1.01316 1.22289 1.00409 0.83557 0.91161 1.45998 1.35884 1.03561 1.46674 1.19290 1.05998 0.82154 1.24465 0.89483 1.24678 0.97956 0.96998 1.01225 1.69812 1.20587 1.29493 1.38113 0.86316 0.77688 0.85143 0.77613 1.21819 1.22035 1.20599 1.16734 0.86272 0.81358 0.78257 1.90925 1.12064 1.85774 1.46934 1.22413 0.89075 0.96176 1.06751 1.21913 1.00590 0.90689 1.06056 1.22948 0.84840 0.99371 1.08832 1.42904 1.04810 1.04222 1.50908 1.17701 0.81009 0.92945 1.02776 1.20883 0.98747 0.92462 1.03204 1.20991 0.91350 1.00274 0.98865 1.21279 0.99331 0.93549 1.00396 1.21107 0.96311 0.95620 0.98561 1.21009 0.90978 1.00634 1.00673 1.73730 1.16636 0.98757 1.20390 0.93497 0.91795 0.89206 0.91599 0.88796 0.93311 0.90672 0.96306 0.90222 0.94228 0.81450 0.80031 0.84909 0.84915 0.85360 0.84886 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 9.71 59.85 0.58 1.73 16 2 N -0.60 -11.29 2.88 -182.76 -0.53 -11.82 16 3 C 0.12 2.22 5.36 -4.04 -0.02 2.20 16 4 C 0.12 2.61 4.53 -66.87 -0.30 2.30 16 5 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 6 C -0.16 -3.08 7.86 -25.81 -0.20 -3.29 16 7 C 0.15 3.76 7.70 -2.98 -0.02 3.73 16 8 N -0.60 -16.01 3.57 -170.76 -0.61 -16.62 16 9 C -0.19 -5.71 9.12 -15.06 -0.14 -5.85 16 10 H 0.09 2.59 4.24 -52.48 -0.22 2.37 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -29.50 11.28 55.49 0.63 -28.87 16 13 Si 0.90 24.43 29.55 -169.99 -5.02 19.41 16 14 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 15 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 16 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 17 C 0.59 12.57 5.78 -12.41 -0.07 12.50 16 18 O -0.49 -12.25 13.79 5.30 0.07 -12.18 16 19 C 0.02 0.33 6.83 -82.75 -0.57 -0.23 16 20 C -0.17 -2.77 10.80 -39.35 -0.43 -3.19 16 21 C -0.02 -0.28 10.78 -16.80 -0.18 -0.46 16 22 N -0.25 -3.43 3.52 -10.55 -0.04 -3.47 16 23 C 0.15 1.65 6.66 -83.61 -0.56 1.09 16 24 C -0.13 -1.14 9.43 -39.40 -0.37 -1.51 16 25 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 26 C -0.13 -0.82 10.04 -39.55 -0.40 -1.22 16 27 C -0.10 -0.73 10.04 -39.61 -0.40 -1.12 16 28 C -0.11 -1.13 9.59 -39.40 -0.38 -1.51 16 29 N -0.26 -4.21 7.64 33.42 0.26 -3.95 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 32 H 0.09 1.39 5.24 -51.93 -0.27 1.12 16 33 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 34 H 0.09 2.05 7.17 -51.93 -0.37 1.68 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 2.20 6.87 -51.93 -0.36 1.84 16 39 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 41 H 0.18 1.59 6.96 -52.49 -0.37 1.23 16 42 H 0.13 0.90 6.65 -52.49 -0.35 0.55 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 45 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.14 1.43 7.65 -52.48 -0.40 1.03 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -37.56 375.45 -9.64 -47.20 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.12 Total: 1.04 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -3.94 Total: 3.60 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.29 Total: -64.73 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.02 Total: 19.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.56 -9.64 -47.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085693778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.756 kcal (2) G-P(sol) polarization free energy of solvation -37.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds