Wall clock time and date at job start Sat Apr 11 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46507 * 119.99748 * 2 1 4 4 C 1.53000 * 109.47052 * 277.09523 * 3 2 1 5 5 H 1.09003 * 112.96200 * 52.93573 * 4 3 2 6 6 C 1.53945 * 113.77131 * 184.61390 * 4 3 2 7 7 C 1.53944 * 86.28963 * 137.90850 * 6 4 3 8 8 N 1.47578 * 113.76938 * 281.11040 * 4 3 2 9 9 C 1.36937 * 134.49294 * 41.06127 * 8 4 3 10 10 H 1.08004 * 120.00265 * 6.87038 * 9 8 4 11 11 C 1.38808 * 119.99835 * 186.88427 * 9 8 4 12 12 N 1.31626 * 120.00324 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 120.00015 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46853 * 59.99925 * 13 11 9 15 15 H 1.48502 * 109.47014 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47088 * 299.99889 * 13 11 9 17 17 C 1.34776 * 120.00193 * 179.97438 * 2 1 3 18 18 O 1.21574 * 119.99774 * 184.79446 * 17 2 1 19 19 C 1.47662 * 119.99898 * 4.80229 * 17 2 1 20 20 C 1.41538 * 126.44285 * 173.91177 * 19 17 2 21 21 C 1.35350 * 105.55461 * 179.74122 * 20 19 17 22 22 N 1.35861 * 107.12730 * 0.37231 * 21 20 19 23 23 C 1.40121 * 124.95796 * 179.87034 * 22 21 20 24 24 C 1.38859 * 120.06550 * 359.44811 * 23 22 21 25 25 C 1.38113 * 119.92467 * 180.27037 * 24 23 22 26 26 C 1.38282 * 120.07064 * 0.02562 * 25 24 23 27 27 C 1.38285 * 120.14062 * 359.97438 * 26 25 24 28 28 C 1.38113 * 120.06231 * 0.02562 * 27 26 25 29 29 N 1.28475 * 110.08098 * 359.60600 * 22 21 20 30 30 H 1.09005 * 109.46530 * 264.24003 * 1 2 3 31 31 H 1.08994 * 109.47043 * 24.23732 * 1 2 3 32 32 H 1.08993 * 109.46507 * 144.23929 * 1 2 3 33 33 H 1.09003 * 109.47249 * 37.09189 * 3 2 1 34 34 H 1.08993 * 109.47154 * 157.09693 * 3 2 1 35 35 H 1.09000 * 113.74171 * 252.25481 * 6 4 3 36 36 H 1.08997 * 113.74086 * 23.45133 * 6 4 3 37 37 H 1.09001 * 113.77145 * 90.69461 * 7 6 4 38 38 H 1.09001 * 113.76669 * 221.98157 * 7 6 4 39 39 H 0.96999 * 120.00216 * 180.02562 * 12 11 9 40 40 H 1.07995 * 127.21516 * 359.94458 * 20 19 17 41 41 H 1.08000 * 126.43355 * 180.24618 * 21 20 19 42 42 H 1.07992 * 120.03918 * 0.25291 * 24 23 22 43 43 H 1.07998 * 119.96377 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.93017 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.97003 * 179.97438 * 27 26 25 46 46 H 1.08009 * 120.03195 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2982 1.7996 -1.4315 5 1 1.3312 1.8629 -1.9305 6 6 3.1484 3.0763 -1.5615 7 6 3.7382 2.4342 -2.8303 8 7 3.3443 1.1412 -2.2378 9 6 3.7761 -0.1505 -2.3793 10 1 3.2377 -0.9554 -1.9011 11 6 4.9061 -0.4255 -3.1373 12 7 5.5622 0.5554 -3.7203 13 14 5.4956 -2.1876 -3.3298 14 1 4.4287 -2.9994 -3.9687 15 1 6.7123 -2.2123 -4.1808 16 1 5.8139 -2.7518 -1.9937 17 6 2.1390 -1.1672 0.0005 18 8 3.3515 -1.1689 0.0885 19 6 1.4046 -2.4438 -0.1060 20 6 1.9740 -3.7327 -0.2393 21 6 0.9266 -4.5883 -0.2938 22 7 -0.2050 -3.8416 -0.2059 23 6 -1.5089 -4.3542 -0.2279 24 6 -1.7169 -5.7209 -0.3583 25 6 -3.0035 -6.2225 -0.3852 26 6 -4.0837 -5.3653 -0.2830 27 6 -3.8797 -4.0037 -0.1530 28 6 -2.5956 -3.4960 -0.1255 29 7 0.0951 -2.5974 -0.0942 30 1 -0.3632 -0.1031 1.0226 31 1 -0.3633 0.9370 -0.4219 32 1 -0.3632 -0.8339 -0.6006 33 1 1.6693 1.9934 0.6198 34 1 3.1990 1.1102 0.3999 35 1 2.5634 3.9752 -1.7559 36 1 3.8716 3.2059 -0.7564 37 1 3.1950 2.6833 -3.7419 38 1 4.8159 2.5645 -2.9283 39 1 6.3515 0.3632 -4.2503 40 1 3.0239 -3.9815 -0.2844 41 1 0.9804 -5.6625 -0.3912 42 1 -0.8738 -6.3909 -0.4389 43 1 -3.1661 -7.2853 -0.4871 44 1 -5.0888 -5.7600 -0.3039 45 1 -4.7254 -3.3367 -0.0738 46 1 -2.4369 -2.4325 -0.0243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085693778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:29 Heat of formation + Delta-G solvation = 142.649777 kcal Electronic energy + Delta-G solvation = -29788.973986 eV Core-core repulsion = 25875.966063 eV Total energy + Delta-G solvation = -3913.007924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -43.98575 -40.89271 -39.96314 -39.20282 -36.45293 -34.67471 -34.10142 -32.58832 -31.53137 -30.77013 -29.80496 -29.39252 -27.53648 -25.57083 -25.20575 -24.36589 -23.72460 -22.34010 -21.86758 -20.78423 -20.39148 -19.32926 -18.77656 -18.00849 -17.32578 -17.29404 -16.97490 -16.84136 -16.22405 -15.94374 -15.73291 -15.55096 -15.17106 -14.92211 -14.72295 -14.51768 -14.37982 -14.05549 -13.87392 -13.75226 -13.46771 -13.31023 -13.05382 -12.91652 -12.60811 -12.58919 -12.39267 -12.34344 -12.14821 -11.82589 -11.61683 -11.43380 -11.32895 -11.12867 -10.98392 -10.67792 -10.35451 -10.02778 -9.55773 -9.24784 -8.72222 -7.77161 -5.06552 -0.30182 0.32846 0.74501 1.22482 1.31168 1.34514 1.41354 1.48613 2.07936 2.43354 2.54086 2.77855 3.13978 3.40768 3.47104 3.68049 3.76514 3.93074 3.99252 4.02295 4.22071 4.29396 4.38232 4.41270 4.41902 4.44387 4.51015 4.56694 4.60510 4.65137 4.72431 4.80262 4.94403 4.98297 5.01848 5.08805 5.14870 5.17459 5.27975 5.37588 5.43488 5.50330 5.64254 5.71699 5.75558 5.82131 6.03076 6.10577 6.43029 6.74504 7.08636 7.28163 7.77141 8.68521 9.39214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.003531 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.144620 B = 7928.872799 C = 9167.696855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.601 5.601 3 C 0.122 3.878 4 C 0.124 3.876 5 H 0.058 0.942 6 C -0.125 4.125 7 C 0.140 3.860 8 N -0.628 5.628 9 C -0.180 4.180 10 H 0.084 0.916 11 C -0.081 4.081 12 N -0.962 5.962 13 Si 0.952 3.048 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.285 1.285 17 C 0.582 3.418 18 O -0.544 6.544 19 C -0.024 4.024 20 C -0.201 4.201 21 C 0.002 3.998 22 N -0.237 5.237 23 C 0.102 3.898 24 C -0.131 4.131 25 C -0.096 4.096 26 C -0.116 4.116 27 C -0.101 4.101 28 C -0.127 4.127 29 N -0.256 5.256 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.016 0.984 38 H 0.043 0.957 39 H 0.239 0.761 40 H 0.156 0.844 41 H 0.228 0.772 42 H 0.151 0.849 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.156 0.844 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.888 -10.841 10.463 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.333 5.333 3 C -0.002 4.002 4 C 0.018 3.982 5 H 0.075 0.925 6 C -0.163 4.163 7 C 0.014 3.986 8 N -0.354 5.354 9 C -0.309 4.309 10 H 0.102 0.898 11 C -0.272 4.272 12 N -0.614 5.614 13 Si 0.782 3.218 14 H -0.210 1.210 15 H -0.219 1.219 16 H -0.211 1.211 17 C 0.369 3.631 18 O -0.420 6.420 19 C -0.183 4.183 20 C -0.229 4.229 21 C -0.138 4.138 22 N -0.019 5.019 23 C 0.013 3.987 24 C -0.151 4.151 25 C -0.114 4.114 26 C -0.134 4.134 27 C -0.119 4.119 28 C -0.147 4.147 29 N -0.091 5.091 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.174 0.826 41 H 0.245 0.755 42 H 0.168 0.832 43 H 0.182 0.818 44 H 0.178 0.822 45 H 0.173 0.827 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.099 -10.505 10.497 29.163 hybrid contribution 1.971 -1.151 -0.717 2.392 sum -23.128 -11.656 9.781 27.684 Atomic orbital electron populations 1.22184 0.77256 1.04172 1.02775 1.47639 1.08332 1.05132 1.72170 1.21842 0.97172 0.84047 0.97092 1.22900 0.92663 0.91075 0.91605 0.92488 1.23506 0.98674 0.96177 0.97967 1.22293 0.98575 0.84102 0.93588 1.46409 1.37834 1.03135 1.48029 1.19551 1.05275 0.83835 1.22262 0.89830 1.25364 0.99024 1.00134 1.02634 1.69989 1.21064 1.30678 1.39713 0.85494 0.77328 0.81849 0.77104 1.20963 1.21882 1.21144 1.17216 0.85969 0.82839 0.77116 1.90871 1.14412 1.86815 1.49873 1.22140 0.90241 0.95708 1.10256 1.21992 1.01195 0.91087 1.08618 1.23472 0.83431 1.00855 1.06050 1.43234 1.06228 1.03640 1.48813 1.18136 0.79768 0.94424 1.06373 1.21215 1.00424 0.91419 1.02081 1.21430 0.90479 1.01980 0.97512 1.21749 1.00915 0.93004 0.97725 1.21419 0.95814 0.96785 0.97906 1.21136 0.91990 1.00277 1.01315 1.73643 1.15113 1.00193 1.20108 0.91499 0.89363 0.90039 0.86555 0.92323 0.88609 0.90421 0.96581 0.93887 0.95167 0.82619 0.75529 0.83179 0.81812 0.82239 0.82656 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 9.71 127.77 1.24 3.41 16 2 N -0.60 -22.51 2.88 -850.39 -2.45 -24.96 16 3 C 0.12 4.50 5.36 86.38 0.46 4.96 16 4 C 0.12 5.09 4.53 45.09 0.20 5.29 16 5 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 6 C -0.12 -4.68 7.86 31.25 0.25 -4.43 16 7 C 0.14 7.08 7.70 86.48 0.67 7.74 16 8 N -0.63 -34.52 3.57 -694.15 -2.48 -37.00 16 9 C -0.18 -11.17 9.12 84.03 0.77 -10.41 16 10 H 0.08 5.21 4.24 -2.91 -0.01 5.19 16 11 C -0.08 -5.21 5.50 84.86 0.47 -4.74 16 12 N -0.96 -63.93 11.28 21.65 0.24 -63.69 16 13 Si 0.95 52.68 29.55 68.60 2.03 54.71 16 14 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 15 H -0.29 -15.90 7.11 99.48 0.71 -15.19 16 16 H -0.28 -15.78 7.11 99.48 0.71 -15.07 16 17 C 0.58 25.89 5.78 86.73 0.50 26.39 16 18 O -0.54 -29.20 13.79 -3.95 -0.05 -29.26 16 19 C -0.02 -0.92 6.83 42.44 0.29 -0.63 16 20 C -0.20 -7.00 10.80 22.42 0.24 -6.75 16 21 C 0.00 0.04 10.78 83.40 0.90 0.94 16 22 N -0.24 -6.36 3.52 -187.30 -0.66 -7.02 16 23 C 0.10 2.10 6.66 38.11 0.25 2.35 16 24 C -0.13 -1.81 9.43 22.39 0.21 -1.60 16 25 C -0.10 -0.86 10.04 22.25 0.22 -0.63 16 26 C -0.12 -0.97 10.04 22.29 0.22 -0.75 16 27 C -0.10 -1.17 10.04 22.25 0.22 -0.95 16 28 C -0.13 -2.32 9.59 22.39 0.21 -2.10 16 29 N -0.26 -8.22 7.64 -48.17 -0.37 -8.59 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 32 H 0.08 2.46 5.24 -2.39 -0.01 2.45 16 33 H 0.12 3.11 8.12 -2.39 -0.02 3.09 16 34 H 0.06 2.62 7.17 -2.39 -0.02 2.60 16 35 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.08 2.89 8.10 -2.39 -0.02 2.88 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 2.48 6.87 -2.39 -0.02 2.47 16 39 H 0.24 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.16 5.58 8.06 -2.91 -0.02 5.55 16 41 H 0.23 3.31 6.96 -2.91 -0.02 3.29 16 42 H 0.15 1.43 6.65 -2.91 -0.02 1.41 16 43 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 45 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 46 H 0.13 2.54 7.65 -2.91 -0.02 2.52 16 Total: -1.00 -89.52 375.45 4.60 -84.92 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.00 Total: 12.78 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 7.33 Total: 18.10 kcal Atomic # 7 Polarization: -135.55 SS G_CDS: -5.71 Total: -141.25 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.26 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.03 Total: 54.71 kcal Total: -89.52 4.60 -84.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085693778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.569 kcal (2) G-P(sol) polarization free energy of solvation -89.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds