Wall clock time and date at job start Sat Apr 11 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99499 * 2 1 4 4 C 1.52995 * 109.47204 * 276.72390 * 3 2 1 5 5 H 1.09006 * 112.96381 * 70.80957 * 4 3 2 6 6 C 1.53950 * 113.77264 * 299.13087 * 4 3 2 7 7 C 1.53942 * 86.28919 * 222.09080 * 6 4 3 8 8 N 1.47579 * 86.24246 * 23.55068 * 7 6 4 9 9 C 1.36935 * 134.49123 * 155.42673 * 8 7 6 10 10 H 1.08006 * 119.99880 * 186.44399 * 9 8 7 11 11 C 1.38814 * 120.00110 * 6.44170 * 9 8 7 12 12 N 1.31621 * 119.99980 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99977 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47138 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46783 * 120.00234 * 13 11 9 16 16 H 1.48500 * 109.47128 * 240.00083 * 13 11 9 17 17 C 1.34776 * 120.00300 * 179.97438 * 2 1 3 18 18 O 1.21603 * 119.99894 * 185.43263 * 17 2 1 19 19 C 1.47416 * 119.99650 * 5.43322 * 17 2 1 20 20 C 1.41328 * 126.41147 * 6.99702 * 19 17 2 21 21 N 1.30476 * 108.06795 * 179.97438 * 20 19 17 22 22 N 1.39937 * 108.91389 * 359.97438 * 21 20 19 23 23 C 1.40153 * 125.77009 * 180.02562 * 22 21 20 24 24 C 1.38844 * 120.06730 * 179.70154 * 23 22 21 25 25 C 1.38119 * 119.93303 * 179.72213 * 24 23 22 26 26 C 1.38281 * 120.06707 * 0.56792 * 25 24 23 27 27 C 1.38284 * 120.13031 * 359.68502 * 26 25 24 28 28 C 1.38110 * 120.07131 * 0.04238 * 27 26 25 29 29 C 1.34542 * 108.45937 * 359.74816 * 22 21 20 30 30 H 1.09005 * 109.46892 * 94.42239 * 1 2 3 31 31 H 1.09007 * 109.47220 * 214.41526 * 1 2 3 32 32 H 1.08999 * 109.47550 * 334.42264 * 1 2 3 33 33 H 1.09006 * 109.46819 * 156.72389 * 3 2 1 34 34 H 1.09001 * 109.47188 * 36.73025 * 3 2 1 35 35 H 1.09000 * 113.73898 * 107.74364 * 6 4 3 36 36 H 1.08998 * 113.73487 * 336.43805 * 6 4 3 37 37 H 1.08999 * 113.76631 * 137.91150 * 7 6 4 38 38 H 1.09002 * 113.76637 * 269.18634 * 7 6 4 39 39 H 0.96993 * 119.99679 * 179.97438 * 12 11 9 40 40 H 1.07999 * 125.96781 * 359.97195 * 20 19 17 41 41 H 1.08005 * 120.03145 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.96972 * 180.29557 * 25 24 23 43 43 H 1.07993 * 119.93434 * 179.70046 * 26 25 24 44 44 H 1.08004 * 119.96143 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.03532 * 180.02562 * 28 27 26 46 46 H 1.07995 * 126.31667 * 180.24200 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3061 1.7949 -1.4325 5 1 1.3544 2.1488 -1.8290 6 6 3.0622 0.8507 -2.3847 7 6 3.7407 2.1162 -2.9398 8 7 3.4252 2.7381 -1.6392 9 6 3.9568 3.7722 -0.9159 10 1 3.5986 3.9726 0.0832 11 6 4.9559 4.5630 -1.4666 12 7 5.3921 4.3190 -2.6843 13 14 5.6805 5.9741 -0.4802 14 1 5.0229 6.0374 0.8498 15 1 7.1384 5.7555 -0.3011 16 1 5.4568 7.2509 -1.2048 17 6 2.1390 -1.1672 0.0005 18 8 3.3509 -1.1694 0.1002 19 6 1.4068 -2.4410 -0.1198 20 6 0.0261 -2.5937 -0.3799 21 7 -0.2408 -3.8705 -0.4123 22 7 0.9386 -4.5865 -0.1787 23 6 1.0549 -5.9826 -0.1373 24 6 2.2901 -6.5710 0.0988 25 6 2.4004 -7.9471 0.1447 26 6 1.2845 -8.7387 -0.0559 27 6 0.0539 -8.1555 -0.2965 28 6 -0.0638 -6.7801 -0.3380 29 6 1.9432 -3.7082 -0.0065 30 1 -0.3633 -0.0792 -1.0247 31 1 -0.3634 -0.8478 0.5809 32 1 -0.3634 0.9269 0.4437 33 1 3.1967 1.1114 0.4061 34 1 1.6657 1.9952 0.6146 35 1 2.4184 0.3460 -3.1051 36 1 3.7476 0.1721 -1.8769 37 1 4.8087 1.9977 -3.1227 38 1 3.2124 2.5648 -3.7811 39 1 6.0899 4.8718 -3.0692 40 1 -0.6841 -1.7933 -0.5262 41 1 3.1629 -5.9533 0.2505 42 1 3.3601 -8.4054 0.3331 43 1 1.3742 -9.8144 -0.0244 44 1 -0.8159 -8.7764 -0.4524 45 1 -1.0253 -6.3253 -0.5255 46 1 2.9777 -3.9498 0.1878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085707034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:38 Heat of formation + Delta-G solvation = 158.534021 kcal Electronic energy + Delta-G solvation = -28533.389946 eV Core-core repulsion = 24621.070814 eV Total energy + Delta-G solvation = -3912.319131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.00786 -39.74737 -39.06857 -37.50067 -35.32185 -33.92120 -32.08701 -31.70652 -30.56578 -29.93079 -28.21051 -27.73850 -26.64228 -24.33951 -23.55363 -23.20405 -22.52492 -21.30759 -21.00198 -19.55720 -18.90687 -18.35584 -16.90252 -16.57102 -16.21754 -16.01709 -15.82330 -15.51364 -15.23636 -14.89441 -14.64677 -14.40284 -14.02971 -13.93090 -13.56854 -13.43295 -13.25947 -13.11378 -12.86936 -12.29124 -12.26192 -12.12702 -11.76801 -11.55645 -11.32309 -11.21746 -10.97270 -10.81959 -10.69992 -10.62164 -10.35223 -9.81922 -9.68664 -9.58866 -9.52140 -9.41841 -9.35606 -8.71873 -8.48245 -8.25414 -6.76838 -5.68508 -2.99833 0.35123 0.83290 1.64727 1.91727 2.00546 3.18916 3.30060 3.44148 3.49059 3.51779 3.52538 4.05008 4.31682 4.46603 4.48048 4.54147 4.65078 4.76671 4.84877 4.89347 5.06744 5.12097 5.22747 5.28484 5.32904 5.39304 5.48656 5.53551 5.61399 5.68140 5.77469 5.84480 5.95571 5.98679 6.02910 6.14639 6.20196 6.23981 6.46166 6.62217 6.72138 6.79772 6.84767 6.88208 7.21131 7.36469 7.54849 7.67486 7.69482 8.07319 8.46714 9.13238 9.79684 10.71406 11.49466 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.002131 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.702566 B =13134.851165 C =13547.847150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.603 5.603 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.159 4.159 7 C 0.166 3.834 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.079 0.921 11 C -0.009 4.009 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.591 3.409 18 O -0.536 6.536 19 C -0.270 4.270 20 C 0.071 3.929 21 N -0.295 5.295 22 N -0.315 5.315 23 C 0.155 3.845 24 C -0.139 4.139 25 C -0.092 4.092 26 C -0.128 4.128 27 C -0.097 4.097 28 C -0.116 4.116 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.252 0.748 40 H 0.214 0.786 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -25.465 5.688 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.335 5.335 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.197 4.197 7 C 0.040 3.960 8 N -0.327 5.327 9 C -0.347 4.347 10 H 0.097 0.903 11 C -0.206 4.206 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.380 3.620 18 O -0.413 6.413 19 C -0.284 4.284 20 C -0.117 4.117 21 N -0.112 5.112 22 N -0.087 5.087 23 C 0.064 3.936 24 C -0.159 4.159 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.116 4.116 28 C -0.136 4.136 29 C -0.023 4.023 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.230 0.770 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.641 -26.095 5.649 29.982 hybrid contribution 0.848 1.694 0.423 1.942 sum -12.793 -24.400 6.072 28.212 Atomic orbital electron populations 1.22344 0.80725 1.03367 1.01533 1.47486 1.06371 1.06206 1.73459 1.21863 0.98096 0.82100 0.98655 1.22566 0.92440 0.90141 0.92864 0.94072 1.23787 0.99593 0.97773 0.98558 1.22077 0.99158 0.86629 0.88103 1.46017 1.31123 1.36308 1.19254 1.19029 1.15090 1.04545 0.96029 0.90329 1.24809 0.99995 0.99290 0.96468 1.69852 1.31411 1.40917 1.14531 0.86089 0.78841 0.82174 0.78930 1.20476 1.21782 1.21869 1.17101 0.86389 0.82196 0.76352 1.90807 1.13370 1.86951 1.50200 1.20423 0.94367 0.93833 1.19747 1.25296 0.95803 0.94319 0.96235 1.77245 1.04660 1.05212 1.24101 1.45678 1.06540 1.04194 1.52319 1.17617 0.95448 0.78389 1.02181 1.20945 0.95591 0.96005 1.03374 1.21015 0.99348 0.92288 0.98443 1.21281 0.92695 1.00412 1.00316 1.21100 0.98130 0.93818 0.98558 1.20936 0.98080 0.93423 1.01139 1.23006 0.95116 0.88291 0.95926 0.92162 0.90466 0.90596 0.88541 0.91477 0.93900 0.89898 0.91785 0.95641 0.93796 0.76962 0.84849 0.84783 0.85325 0.84983 0.84302 0.79196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 8.70 59.85 0.52 1.14 16 2 N -0.60 -8.88 2.73 -182.85 -0.50 -9.38 16 3 C 0.12 2.11 5.52 -4.04 -0.02 2.09 16 4 C 0.13 2.66 4.60 -66.74 -0.31 2.36 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -3.34 7.22 -25.79 -0.19 -3.52 16 7 C 0.17 4.17 7.36 -2.98 -0.02 4.15 16 8 N -0.60 -15.83 3.58 -169.74 -0.61 -16.44 16 9 C -0.22 -6.24 10.52 -15.06 -0.16 -6.40 16 10 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -28.21 11.56 55.49 0.64 -27.57 16 13 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 C 0.59 9.49 7.07 -12.52 -0.09 9.41 16 18 O -0.54 -10.67 15.19 5.28 0.08 -10.59 16 19 C -0.27 -3.52 5.94 -105.05 -0.62 -4.15 16 20 C 0.07 0.78 9.88 -16.95 -0.17 0.61 16 21 N -0.29 -3.49 11.77 30.87 0.36 -3.13 16 22 N -0.31 -3.61 3.77 -10.21 -0.04 -3.65 16 23 C 0.16 1.52 6.68 -83.60 -0.56 0.96 16 24 C -0.14 -1.09 9.45 -39.40 -0.37 -1.47 16 25 C -0.09 -0.57 10.04 -39.61 -0.40 -0.97 16 26 C -0.13 -0.73 10.04 -39.55 -0.40 -1.13 16 27 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 28 C -0.12 -0.99 9.65 -39.40 -0.38 -1.37 16 29 C 0.12 1.46 10.61 -16.43 -0.17 1.29 16 30 H 0.06 0.51 7.48 -51.93 -0.39 0.13 16 31 H 0.08 0.61 5.10 -51.92 -0.26 0.35 16 32 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 33 H 0.10 2.08 7.17 -51.93 -0.37 1.71 16 34 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 37 H 0.06 1.77 7.47 -51.93 -0.39 1.38 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.21 1.66 4.49 -52.49 -0.24 1.43 16 41 H 0.13 0.89 6.71 -52.48 -0.35 0.53 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 45 H 0.14 1.20 7.68 -52.49 -0.40 0.79 16 46 H 0.19 1.88 7.01 -52.49 -0.37 1.52 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -36.27 378.81 -9.24 -45.50 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.03 Total: 0.29 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -3.83 Total: 1.61 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.14 Total: -60.17 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.27 -9.24 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085707034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.036 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds