Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99499 * 2 1 4 4 C 1.52995 * 109.47204 * 276.72390 * 3 2 1 5 5 H 1.09006 * 112.96381 * 70.80957 * 4 3 2 6 6 C 1.53950 * 113.77264 * 299.13087 * 4 3 2 7 7 C 1.53942 * 86.28919 * 222.09080 * 6 4 3 8 8 N 1.47579 * 86.24246 * 23.55068 * 7 6 4 9 9 C 1.36935 * 134.49123 * 155.42673 * 8 7 6 10 10 H 1.08006 * 119.99880 * 186.44399 * 9 8 7 11 11 C 1.38814 * 120.00110 * 6.44170 * 9 8 7 12 12 N 1.31621 * 119.99980 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99977 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47138 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46783 * 120.00234 * 13 11 9 16 16 H 1.48500 * 109.47128 * 240.00083 * 13 11 9 17 17 C 1.34776 * 120.00300 * 179.97438 * 2 1 3 18 18 O 1.21603 * 119.99894 * 185.43263 * 17 2 1 19 19 C 1.47416 * 119.99650 * 5.43322 * 17 2 1 20 20 C 1.41328 * 126.41147 * 6.99702 * 19 17 2 21 21 N 1.30476 * 108.06795 * 179.97438 * 20 19 17 22 22 N 1.39937 * 108.91389 * 359.97438 * 21 20 19 23 23 C 1.40153 * 125.77009 * 180.02562 * 22 21 20 24 24 C 1.38844 * 120.06730 * 179.70154 * 23 22 21 25 25 C 1.38119 * 119.93303 * 179.72213 * 24 23 22 26 26 C 1.38281 * 120.06707 * 0.56792 * 25 24 23 27 27 C 1.38284 * 120.13031 * 359.68502 * 26 25 24 28 28 C 1.38110 * 120.07131 * 0.04238 * 27 26 25 29 29 C 1.34542 * 108.45937 * 359.74816 * 22 21 20 30 30 H 1.09005 * 109.46892 * 94.42239 * 1 2 3 31 31 H 1.09007 * 109.47220 * 214.41526 * 1 2 3 32 32 H 1.08999 * 109.47550 * 334.42264 * 1 2 3 33 33 H 1.09006 * 109.46819 * 156.72389 * 3 2 1 34 34 H 1.09001 * 109.47188 * 36.73025 * 3 2 1 35 35 H 1.09000 * 113.73898 * 107.74364 * 6 4 3 36 36 H 1.08998 * 113.73487 * 336.43805 * 6 4 3 37 37 H 1.08999 * 113.76631 * 137.91150 * 7 6 4 38 38 H 1.09002 * 113.76637 * 269.18634 * 7 6 4 39 39 H 0.96993 * 119.99679 * 179.97438 * 12 11 9 40 40 H 1.07999 * 125.96781 * 359.97195 * 20 19 17 41 41 H 1.08005 * 120.03145 * 359.97438 * 24 23 22 42 42 H 1.08002 * 119.96972 * 180.29557 * 25 24 23 43 43 H 1.07993 * 119.93434 * 179.70046 * 26 25 24 44 44 H 1.08004 * 119.96143 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.03532 * 180.02562 * 28 27 26 46 46 H 1.07995 * 126.31667 * 180.24200 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3061 1.7949 -1.4325 5 1 1.3544 2.1488 -1.8290 6 6 3.0622 0.8507 -2.3847 7 6 3.7407 2.1162 -2.9398 8 7 3.4252 2.7381 -1.6392 9 6 3.9568 3.7722 -0.9159 10 1 3.5986 3.9726 0.0832 11 6 4.9559 4.5630 -1.4666 12 7 5.3921 4.3190 -2.6843 13 14 5.6805 5.9741 -0.4802 14 1 5.0229 6.0374 0.8498 15 1 7.1384 5.7555 -0.3011 16 1 5.4568 7.2509 -1.2048 17 6 2.1390 -1.1672 0.0005 18 8 3.3509 -1.1694 0.1002 19 6 1.4068 -2.4410 -0.1198 20 6 0.0261 -2.5937 -0.3799 21 7 -0.2408 -3.8705 -0.4123 22 7 0.9386 -4.5865 -0.1787 23 6 1.0549 -5.9826 -0.1373 24 6 2.2901 -6.5710 0.0988 25 6 2.4004 -7.9471 0.1447 26 6 1.2845 -8.7387 -0.0559 27 6 0.0539 -8.1555 -0.2965 28 6 -0.0638 -6.7801 -0.3380 29 6 1.9432 -3.7082 -0.0065 30 1 -0.3633 -0.0792 -1.0247 31 1 -0.3634 -0.8478 0.5809 32 1 -0.3634 0.9269 0.4437 33 1 3.1967 1.1114 0.4061 34 1 1.6657 1.9952 0.6146 35 1 2.4184 0.3460 -3.1051 36 1 3.7476 0.1721 -1.8769 37 1 4.8087 1.9977 -3.1227 38 1 3.2124 2.5648 -3.7811 39 1 6.0899 4.8718 -3.0692 40 1 -0.6841 -1.7933 -0.5262 41 1 3.1629 -5.9533 0.2505 42 1 3.3601 -8.4054 0.3331 43 1 1.3742 -9.8144 -0.0244 44 1 -0.8159 -8.7764 -0.4524 45 1 -1.0253 -6.3253 -0.5255 46 1 2.9777 -3.9498 0.1878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085707034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = 136.356464 kcal Electronic energy + Delta-G solvation = -28534.351637 eV Core-core repulsion = 24621.070814 eV Total energy + Delta-G solvation = -3913.280822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.86599 -40.86010 -39.89633 -39.18814 -36.55661 -34.71564 -34.17607 -32.32894 -31.46292 -30.81278 -29.82835 -29.31645 -27.69950 -25.43338 -25.19665 -24.20707 -23.79693 -22.28121 -21.80007 -20.84032 -20.50349 -19.22233 -18.61695 -17.61218 -17.28764 -17.02663 -16.88422 -16.73811 -16.32045 -16.21408 -15.77699 -15.61482 -15.14354 -15.01624 -14.76053 -14.58315 -14.22036 -14.01087 -13.87821 -13.75947 -13.72518 -13.33710 -12.96346 -12.66970 -12.60290 -12.50454 -12.45172 -12.34582 -12.22504 -11.94169 -11.81457 -11.55762 -11.45336 -11.22085 -10.85412 -10.84862 -10.30898 -10.04570 -9.59466 -9.18519 -8.85662 -7.88019 -5.20437 -0.34393 0.31146 0.78913 1.12984 1.17881 1.44940 1.47086 1.56850 2.01831 2.38545 2.51231 2.76536 3.26429 3.34909 3.47366 3.58710 3.79687 3.86427 3.89587 3.95030 4.12928 4.20481 4.25876 4.33317 4.36090 4.40598 4.45982 4.52000 4.56022 4.62971 4.69874 4.81969 4.88439 4.93669 5.00358 5.02611 5.11381 5.14478 5.25122 5.33833 5.39298 5.50208 5.53780 5.59589 5.67522 5.75972 5.96181 6.03056 6.36667 6.50881 6.94030 7.26584 7.64041 8.61241 9.30703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.002131 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.702566 B =13134.851165 C =13547.847150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.600 5.600 3 C 0.130 3.870 4 C 0.136 3.864 5 H 0.066 0.934 6 C -0.133 4.133 7 C 0.160 3.840 8 N -0.630 5.630 9 C -0.222 4.222 10 H 0.088 0.912 11 C -0.076 4.076 12 N -0.959 5.959 13 Si 0.978 3.022 14 H -0.261 1.261 15 H -0.297 1.297 16 H -0.292 1.292 17 C 0.589 3.411 18 O -0.587 6.587 19 C -0.290 4.290 20 C 0.082 3.918 21 N -0.311 5.311 22 N -0.312 5.312 23 C 0.120 3.880 24 C -0.148 4.148 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.098 4.098 28 C -0.128 4.128 29 C 0.123 3.877 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.022 0.978 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.133 0.867 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 -27.373 6.722 32.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.331 5.331 3 C 0.005 3.995 4 C 0.030 3.970 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.035 3.965 8 N -0.357 5.357 9 C -0.351 4.351 10 H 0.106 0.894 11 C -0.268 4.268 12 N -0.608 5.608 13 Si 0.806 3.194 14 H -0.185 1.185 15 H -0.224 1.224 16 H -0.219 1.219 17 C 0.379 3.621 18 O -0.468 6.468 19 C -0.304 4.304 20 C -0.105 4.105 21 N -0.128 5.128 22 N -0.083 5.083 23 C 0.029 3.971 24 C -0.168 4.168 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.117 4.117 28 C -0.148 4.148 29 C -0.026 4.026 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.259 0.741 41 H 0.156 0.844 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.150 0.850 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.117 -28.051 6.706 33.039 hybrid contribution 1.541 2.064 0.106 2.578 sum -14.576 -25.987 6.812 30.565 Atomic orbital electron populations 1.22711 0.77285 1.05292 1.03509 1.47483 1.08331 1.04462 1.72810 1.21433 0.97134 0.84096 0.96800 1.22734 0.91709 0.88100 0.94478 0.91709 1.23489 0.99072 0.95986 0.98610 1.22004 0.97277 0.89064 0.88186 1.46368 1.33253 1.36545 1.19527 1.19458 1.14663 1.04359 0.96598 0.89403 1.25699 1.01076 1.02310 0.97736 1.70048 1.32249 1.42148 1.16373 0.85009 0.77470 0.78657 0.78238 1.18491 1.22414 1.21899 1.17512 0.85922 0.83300 0.75349 1.90779 1.15681 1.87712 1.52664 1.20193 0.95366 0.92697 1.22193 1.25700 0.95163 0.94657 0.95005 1.77220 1.05232 1.05583 1.24782 1.45825 1.06156 1.04894 1.51464 1.17988 0.96737 0.77729 1.04631 1.21177 0.95200 0.97080 1.03333 1.21385 1.00798 0.91583 0.97518 1.21697 0.92038 1.01943 0.98301 1.21430 0.99508 0.93070 0.97658 1.21053 0.97530 0.94467 1.01725 1.23227 0.95770 0.88380 0.95190 0.90062 0.88402 0.88937 0.92510 0.89516 0.90758 0.91731 0.95557 0.96067 0.94491 0.74085 0.84375 0.82378 0.82385 0.82571 0.84954 0.78273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 8.70 127.77 1.11 1.97 16 2 N -0.60 -16.75 2.73 -850.66 -2.32 -19.07 16 3 C 0.13 4.62 5.52 86.38 0.48 5.10 16 4 C 0.14 5.54 4.60 45.05 0.21 5.75 16 5 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 6 C -0.13 -5.60 7.22 31.25 0.23 -5.37 16 7 C 0.16 8.31 7.36 86.48 0.64 8.95 16 8 N -0.63 -33.66 3.58 -690.92 -2.47 -36.13 16 9 C -0.22 -12.80 10.52 84.03 0.88 -11.91 16 10 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 11 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 12 N -0.96 -60.88 11.56 21.65 0.25 -60.63 16 13 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 14 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 16 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 17 C 0.59 18.78 7.07 86.66 0.61 19.39 16 18 O -0.59 -24.22 15.19 -4.04 -0.06 -24.28 16 19 C -0.29 -7.36 5.94 -20.14 -0.12 -7.48 16 20 C 0.08 1.63 9.88 85.65 0.85 2.47 16 21 N -0.31 -6.99 11.77 -56.23 -0.66 -7.65 16 22 N -0.31 -6.98 3.77 -186.21 -0.70 -7.69 16 23 C 0.12 2.28 6.68 38.10 0.25 2.53 16 24 C -0.15 -2.19 9.45 22.39 0.21 -1.98 16 25 C -0.09 -0.95 10.04 22.25 0.22 -0.73 16 26 C -0.12 -1.02 10.04 22.29 0.22 -0.79 16 27 C -0.10 -1.02 10.04 22.25 0.22 -0.80 16 28 C -0.13 -2.07 9.65 22.38 0.22 -1.85 16 29 C 0.12 2.90 10.61 84.24 0.89 3.79 16 30 H 0.08 1.03 7.48 -2.38 -0.02 1.01 16 31 H 0.10 1.21 5.10 -2.38 -0.01 1.20 16 32 H 0.09 1.24 7.91 -2.39 -0.02 1.22 16 33 H 0.06 2.50 7.17 -2.38 -0.02 2.49 16 34 H 0.09 2.74 7.97 -2.39 -0.02 2.72 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 2.98 6.76 -2.39 -0.02 2.97 16 37 H 0.03 1.53 7.47 -2.39 -0.02 1.51 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.24 2.96 4.49 -2.91 -0.01 2.95 16 41 H 0.14 1.79 6.71 -2.91 -0.02 1.77 16 42 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.13 2.21 7.68 -2.91 -0.02 2.19 16 46 H 0.20 4.07 7.01 -2.91 -0.02 4.05 16 Total: -1.00 -82.63 378.81 4.65 -77.97 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.00 Total: 12.99 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 7.59 Total: 14.99 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -5.91 Total: -131.16 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -82.63 4.65 -77.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085707034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.331 kcal (2) G-P(sol) polarization free energy of solvation -82.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds