Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99917 * 2 1 4 4 C 1.52998 * 109.47615 * 93.52104 * 3 2 1 5 5 H 1.09000 * 112.73616 * 315.45832 * 4 3 2 6 6 C 1.53492 * 113.52197 * 86.24958 * 4 3 2 7 7 C 1.53237 * 83.43157 * 140.68998 * 6 4 3 8 8 N 1.47060 * 113.46999 * 184.71847 * 4 3 2 9 9 C 1.36931 * 136.06383 * 38.00209 * 8 4 3 10 10 H 1.08010 * 119.99508 * 354.61930 * 9 8 4 11 11 C 1.38809 * 120.00572 * 174.35084 * 9 8 4 12 12 N 1.31623 * 119.99805 * 0.26836 * 11 9 8 13 13 Si 1.86797 * 120.00339 * 180.27643 * 11 9 8 14 14 H 1.48494 * 109.47369 * 89.99127 * 13 11 9 15 15 H 1.48493 * 109.47066 * 209.99733 * 13 11 9 16 16 H 1.48501 * 109.46923 * 329.99432 * 13 11 9 17 17 C 1.34780 * 119.99977 * 179.97438 * 2 1 3 18 18 O 1.21605 * 119.99761 * 185.57707 * 17 2 1 19 19 C 1.47403 * 119.99905 * 5.57862 * 17 2 1 20 20 C 1.41339 * 126.41117 * 6.97769 * 19 17 2 21 21 N 1.30471 * 108.06594 * 179.97438 * 20 19 17 22 22 N 1.39930 * 108.91906 * 0.02562 * 21 20 19 23 23 C 1.40164 * 125.77581 * 180.02562 * 22 21 20 24 24 C 1.38844 * 120.06659 * 179.70276 * 23 22 21 25 25 C 1.38122 * 119.92462 * 179.72334 * 24 23 22 26 26 C 1.38270 * 120.06918 * 0.52980 * 25 24 23 27 27 C 1.38280 * 120.13702 * 359.76434 * 26 25 24 28 28 C 1.38114 * 120.06703 * 359.96080 * 27 26 25 29 29 C 1.34546 * 108.45892 * 359.74906 * 22 21 20 30 30 H 1.09002 * 109.47334 * 95.93256 * 1 2 3 31 31 H 1.09004 * 109.47404 * 215.92806 * 1 2 3 32 32 H 1.09001 * 109.47627 * 335.92878 * 1 2 3 33 33 H 1.09000 * 109.46876 * 333.52009 * 3 2 1 34 34 H 1.08998 * 109.47034 * 213.52276 * 3 2 1 35 35 H 1.09009 * 114.20775 * 254.45018 * 6 4 3 36 36 H 1.08998 * 114.20600 * 27.07301 * 6 4 3 37 37 H 1.09000 * 113.38258 * 219.29263 * 7 6 4 38 38 H 1.09005 * 113.46732 * 88.93144 * 7 6 4 39 39 H 0.96991 * 119.99704 * 180.02562 * 12 11 9 40 40 H 1.07992 * 125.96308 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.03533 * 359.97438 * 24 23 22 42 42 H 1.08007 * 119.96310 * 180.29508 * 25 24 23 43 43 H 1.08005 * 119.93586 * 179.74433 * 26 25 24 44 44 H 1.08004 * 119.96563 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.03505 * 179.97438 * 28 27 26 46 46 H 1.07994 * 126.31452 * 180.24854 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5292 1.6662 1.4397 5 1 1.6860 1.5352 2.1179 6 6 3.8342 1.0484 1.9605 7 6 4.0190 2.4232 2.6118 8 7 3.1702 2.9852 1.5503 9 6 3.0389 4.2002 0.9326 10 1 2.3690 4.3092 0.0924 11 6 3.7624 5.2931 1.3897 12 7 4.5787 5.1602 2.4137 13 14 3.5774 6.9523 0.5520 14 1 2.4845 7.7172 1.2044 15 1 4.8493 7.7098 0.6678 16 1 3.2513 6.7490 -0.8824 17 6 2.1389 -1.1672 0.0005 18 8 3.3506 -1.1696 0.1029 19 6 1.4071 -2.4408 -0.1230 20 6 0.0267 -2.5932 -0.3860 21 7 -0.2400 -3.8698 -0.4207 22 7 0.9386 -4.5862 -0.1847 23 6 1.0548 -5.9824 -0.1448 24 6 2.2894 -6.5712 0.0941 25 6 2.3995 -7.9473 0.1385 26 6 1.2840 -8.7385 -0.0655 27 6 0.0543 -8.1551 -0.3096 28 6 -0.0633 -6.7796 -0.3496 29 6 1.9428 -3.7082 -0.0086 30 1 -0.3634 -0.1062 -1.0222 31 1 -0.3634 -0.8322 0.6030 32 1 -0.3634 0.9383 0.4191 33 1 1.5825 2.0433 -0.4582 34 1 3.1210 1.1550 -0.5675 35 1 3.6909 0.2318 2.6683 36 1 4.5628 0.8211 1.1824 37 1 5.0478 2.7819 2.5806 38 1 3.5766 2.4958 3.6054 39 1 5.0840 5.9239 2.7333 40 1 -0.6831 -1.7926 -0.5325 41 1 3.1618 -5.9537 0.2490 42 1 3.3586 -8.4058 0.3290 43 1 1.3734 -9.8144 -0.0344 44 1 -0.8151 -8.7758 -0.4690 45 1 -1.0240 -6.3245 -0.5408 46 1 2.9767 -3.9501 0.1881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085707035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = 161.188807 kcal Electronic energy + Delta-G solvation = -28392.727659 eV Core-core repulsion = 24480.523648 eV Total energy + Delta-G solvation = -3912.204011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.01913 -39.74821 -39.08556 -37.68501 -35.34101 -33.93650 -32.14049 -31.72177 -30.57929 -29.93924 -28.21050 -27.79743 -26.57824 -24.30140 -23.56725 -23.29497 -22.42374 -21.30180 -20.98854 -19.55911 -19.04162 -18.34959 -16.88014 -16.64435 -16.23925 -16.03489 -15.85326 -15.48813 -15.13731 -14.95262 -14.57390 -14.39850 -14.04174 -13.89992 -13.53918 -13.47793 -13.29633 -13.12165 -12.86012 -12.49326 -12.16293 -11.95245 -11.77889 -11.60877 -11.39612 -11.22946 -11.00856 -10.83845 -10.70926 -10.67572 -10.34427 -9.81383 -9.69260 -9.59333 -9.53631 -9.43121 -9.32643 -8.72504 -8.49667 -8.19415 -6.78830 -5.70642 -3.02337 0.33676 0.81760 1.63418 1.90441 1.99055 3.18897 3.28692 3.42100 3.46507 3.49028 3.52814 4.03645 4.30078 4.45117 4.46421 4.51723 4.63546 4.75585 4.83560 4.88405 5.09324 5.11534 5.21308 5.27205 5.32855 5.38870 5.47125 5.53541 5.65996 5.71680 5.77054 5.83028 5.96766 6.00308 6.08918 6.13357 6.16872 6.22570 6.50891 6.66046 6.70643 6.76180 6.91454 6.93397 7.19738 7.34534 7.57091 7.66900 7.67150 8.04995 8.45709 9.09662 9.76819 10.74141 11.47562 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030597 B = 0.002037 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.896879 B =13740.846496 C =14350.961953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.605 5.605 3 C 0.120 3.880 4 C 0.130 3.870 5 H 0.039 0.961 6 C -0.150 4.150 7 C 0.154 3.846 8 N -0.602 5.602 9 C -0.216 4.216 10 H 0.079 0.921 11 C -0.009 4.009 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.588 3.412 18 O -0.533 6.533 19 C -0.270 4.270 20 C 0.071 3.929 21 N -0.295 5.295 22 N -0.315 5.315 23 C 0.155 3.845 24 C -0.139 4.139 25 C -0.092 4.092 26 C -0.128 4.128 27 C -0.097 4.097 28 C -0.116 4.116 29 C 0.123 3.877 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.253 0.747 40 H 0.214 0.786 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -27.573 -5.602 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.338 5.338 3 C -0.003 4.003 4 C 0.022 3.978 5 H 0.056 0.944 6 C -0.188 4.188 7 C 0.029 3.971 8 N -0.328 5.328 9 C -0.344 4.344 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.376 3.624 18 O -0.410 6.410 19 C -0.284 4.284 20 C -0.117 4.117 21 N -0.113 5.113 22 N -0.088 5.088 23 C 0.064 3.936 24 C -0.159 4.159 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.116 4.116 28 C -0.136 4.136 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.230 0.770 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.364 -28.106 -5.770 30.506 hybrid contribution 0.280 1.749 -0.132 1.776 sum -10.085 -26.357 -5.902 28.831 Atomic orbital electron populations 1.22322 0.80704 1.03807 1.01081 1.47612 1.06421 1.06314 1.73450 1.21907 0.96862 0.82142 0.99393 1.22439 0.94932 0.87188 0.93253 0.94361 1.23540 0.98150 0.96727 1.00388 1.21944 0.96884 0.87562 0.90759 1.45633 1.40227 1.06129 1.40815 1.18875 1.22068 0.84167 1.09280 0.90285 1.24818 0.99909 0.97712 0.98090 1.69857 1.29935 1.29755 1.26927 0.86151 0.77021 0.84092 0.78693 1.21707 1.21687 1.20620 1.17120 0.86464 0.82170 0.76614 1.90797 1.13347 1.86923 1.49958 1.20442 0.94381 0.93888 1.19697 1.25294 0.95812 0.94324 0.96268 1.77240 1.04670 1.05217 1.24125 1.45686 1.06588 1.04199 1.52290 1.17620 0.95455 0.78382 1.02186 1.20943 0.95603 0.95997 1.03368 1.21015 0.99357 0.92291 0.98431 1.21280 0.92702 1.00423 1.00295 1.21102 0.98132 0.93815 0.98551 1.20938 0.98076 0.93432 1.01148 1.23006 0.95136 0.88282 0.95918 0.92378 0.90536 0.90306 0.90713 0.89799 0.93373 0.89920 0.91876 0.95948 0.93718 0.77037 0.84843 0.84775 0.85317 0.84980 0.84311 0.79176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.63 59.85 0.52 1.17 16 2 N -0.61 -8.94 2.88 -182.86 -0.53 -9.47 16 3 C 0.12 2.19 5.31 -4.04 -0.02 2.17 16 4 C 0.13 2.76 4.30 -72.40 -0.31 2.45 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.15 -3.21 6.79 -26.35 -0.18 -3.39 16 7 C 0.15 3.88 7.25 -8.64 -0.06 3.82 16 8 N -0.60 -15.79 3.65 -177.17 -0.65 -16.43 16 9 C -0.22 -6.08 10.55 -15.06 -0.16 -6.24 16 10 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.96 11.66 55.49 0.65 -27.31 16 13 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.59 9.21 7.63 -12.53 -0.10 9.11 16 18 O -0.53 -10.07 14.99 5.27 0.08 -9.99 16 19 C -0.27 -3.45 5.94 -105.05 -0.62 -4.08 16 20 C 0.07 0.76 9.88 -16.95 -0.17 0.59 16 21 N -0.30 -3.46 11.77 30.87 0.36 -3.10 16 22 N -0.32 -3.55 3.77 -10.20 -0.04 -3.59 16 23 C 0.16 1.49 6.68 -83.60 -0.56 0.93 16 24 C -0.14 -1.06 9.45 -39.40 -0.37 -1.43 16 25 C -0.09 -0.55 10.04 -39.61 -0.40 -0.95 16 26 C -0.13 -0.71 10.04 -39.55 -0.40 -1.11 16 27 C -0.10 -0.61 10.04 -39.61 -0.40 -1.00 16 28 C -0.12 -0.98 9.65 -39.40 -0.38 -1.36 16 29 C 0.12 1.42 10.61 -16.42 -0.17 1.25 16 30 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 31 H 0.08 0.67 5.27 -51.93 -0.27 0.39 16 32 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 34 H 0.08 1.70 7.36 -51.93 -0.38 1.31 16 35 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 37 H 0.06 1.74 7.40 -51.93 -0.38 1.35 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.21 1.64 4.46 -52.49 -0.23 1.41 16 41 H 0.13 0.85 6.71 -52.49 -0.35 0.49 16 42 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 44 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 45 H 0.14 1.18 7.68 -52.49 -0.40 0.78 16 46 H 0.19 1.81 7.01 -52.49 -0.37 1.44 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.56 379.56 -9.39 -44.96 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.09 Total: 0.30 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.88 Total: 1.60 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.20 Total: -59.89 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.56 -9.39 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085707035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.144 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds