Wall clock time and date at job start Sat Apr 11 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99917 * 2 1 4 4 C 1.52998 * 109.47615 * 93.52104 * 3 2 1 5 5 H 1.09000 * 112.73616 * 315.45832 * 4 3 2 6 6 C 1.53492 * 113.52197 * 86.24958 * 4 3 2 7 7 C 1.53237 * 83.43157 * 140.68998 * 6 4 3 8 8 N 1.47060 * 113.46999 * 184.71847 * 4 3 2 9 9 C 1.36931 * 136.06383 * 38.00209 * 8 4 3 10 10 H 1.08010 * 119.99508 * 354.61930 * 9 8 4 11 11 C 1.38809 * 120.00572 * 174.35084 * 9 8 4 12 12 N 1.31623 * 119.99805 * 0.26836 * 11 9 8 13 13 Si 1.86797 * 120.00339 * 180.27643 * 11 9 8 14 14 H 1.48494 * 109.47369 * 89.99127 * 13 11 9 15 15 H 1.48493 * 109.47066 * 209.99733 * 13 11 9 16 16 H 1.48501 * 109.46923 * 329.99432 * 13 11 9 17 17 C 1.34780 * 119.99977 * 179.97438 * 2 1 3 18 18 O 1.21605 * 119.99761 * 185.57707 * 17 2 1 19 19 C 1.47403 * 119.99905 * 5.57862 * 17 2 1 20 20 C 1.41339 * 126.41117 * 6.97769 * 19 17 2 21 21 N 1.30471 * 108.06594 * 179.97438 * 20 19 17 22 22 N 1.39930 * 108.91906 * 0.02562 * 21 20 19 23 23 C 1.40164 * 125.77581 * 180.02562 * 22 21 20 24 24 C 1.38844 * 120.06659 * 179.70276 * 23 22 21 25 25 C 1.38122 * 119.92462 * 179.72334 * 24 23 22 26 26 C 1.38270 * 120.06918 * 0.52980 * 25 24 23 27 27 C 1.38280 * 120.13702 * 359.76434 * 26 25 24 28 28 C 1.38114 * 120.06703 * 359.96080 * 27 26 25 29 29 C 1.34546 * 108.45892 * 359.74906 * 22 21 20 30 30 H 1.09002 * 109.47334 * 95.93256 * 1 2 3 31 31 H 1.09004 * 109.47404 * 215.92806 * 1 2 3 32 32 H 1.09001 * 109.47627 * 335.92878 * 1 2 3 33 33 H 1.09000 * 109.46876 * 333.52009 * 3 2 1 34 34 H 1.08998 * 109.47034 * 213.52276 * 3 2 1 35 35 H 1.09009 * 114.20775 * 254.45018 * 6 4 3 36 36 H 1.08998 * 114.20600 * 27.07301 * 6 4 3 37 37 H 1.09000 * 113.38258 * 219.29263 * 7 6 4 38 38 H 1.09005 * 113.46732 * 88.93144 * 7 6 4 39 39 H 0.96991 * 119.99704 * 180.02562 * 12 11 9 40 40 H 1.07992 * 125.96308 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.03533 * 359.97438 * 24 23 22 42 42 H 1.08007 * 119.96310 * 180.29508 * 25 24 23 43 43 H 1.08005 * 119.93586 * 179.74433 * 26 25 24 44 44 H 1.08004 * 119.96563 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.03505 * 179.97438 * 28 27 26 46 46 H 1.07994 * 126.31452 * 180.24854 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5292 1.6662 1.4397 5 1 1.6860 1.5352 2.1179 6 6 3.8342 1.0484 1.9605 7 6 4.0190 2.4232 2.6118 8 7 3.1702 2.9852 1.5503 9 6 3.0389 4.2002 0.9326 10 1 2.3690 4.3092 0.0924 11 6 3.7624 5.2931 1.3897 12 7 4.5787 5.1602 2.4137 13 14 3.5774 6.9523 0.5520 14 1 2.4845 7.7172 1.2044 15 1 4.8493 7.7098 0.6678 16 1 3.2513 6.7490 -0.8824 17 6 2.1389 -1.1672 0.0005 18 8 3.3506 -1.1696 0.1029 19 6 1.4071 -2.4408 -0.1230 20 6 0.0267 -2.5932 -0.3860 21 7 -0.2400 -3.8698 -0.4207 22 7 0.9386 -4.5862 -0.1847 23 6 1.0548 -5.9824 -0.1448 24 6 2.2894 -6.5712 0.0941 25 6 2.3995 -7.9473 0.1385 26 6 1.2840 -8.7385 -0.0655 27 6 0.0543 -8.1551 -0.3096 28 6 -0.0633 -6.7796 -0.3496 29 6 1.9428 -3.7082 -0.0086 30 1 -0.3634 -0.1062 -1.0222 31 1 -0.3634 -0.8322 0.6030 32 1 -0.3634 0.9383 0.4191 33 1 1.5825 2.0433 -0.4582 34 1 3.1210 1.1550 -0.5675 35 1 3.6909 0.2318 2.6683 36 1 4.5628 0.8211 1.1824 37 1 5.0478 2.7819 2.5806 38 1 3.5766 2.4958 3.6054 39 1 5.0840 5.9239 2.7333 40 1 -0.6831 -1.7926 -0.5325 41 1 3.1618 -5.9537 0.2490 42 1 3.3586 -8.4058 0.3290 43 1 1.3734 -9.8144 -0.0344 44 1 -0.8151 -8.7758 -0.4690 45 1 -1.0240 -6.3245 -0.5408 46 1 2.9767 -3.9501 0.1881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085707035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:41 Heat of formation + Delta-G solvation = 139.863814 kcal Electronic energy + Delta-G solvation = -28393.652380 eV Core-core repulsion = 24480.523648 eV Total energy + Delta-G solvation = -3913.128732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.85588 -40.86756 -39.93874 -39.32324 -36.54920 -34.71011 -34.21957 -32.32409 -31.45664 -30.80797 -29.89187 -29.29962 -27.65167 -25.45205 -25.18915 -24.19264 -23.71553 -22.25766 -21.78425 -20.99307 -20.50187 -19.20019 -18.65904 -17.58710 -17.34055 -17.03621 -16.87288 -16.65000 -16.33107 -16.06267 -15.77894 -15.58654 -15.15617 -15.00994 -14.83553 -14.57394 -14.12270 -14.03882 -13.86405 -13.74672 -13.69000 -13.37456 -12.97572 -12.68325 -12.62036 -12.55219 -12.48146 -12.37339 -12.21912 -11.93610 -11.79638 -11.62306 -11.46601 -11.10700 -10.84887 -10.80468 -10.29583 -10.04229 -9.55927 -9.18075 -8.88115 -7.87777 -5.21269 -0.33506 0.31436 0.80282 1.14480 1.17512 1.46753 1.49712 1.58001 2.03289 2.41279 2.51011 2.76881 3.27058 3.34599 3.49670 3.59897 3.81909 3.86570 3.90304 3.96241 4.13458 4.21290 4.27306 4.30502 4.38017 4.40916 4.42855 4.52263 4.55472 4.63719 4.65213 4.80398 4.90705 4.92917 5.00596 5.07965 5.11076 5.13213 5.24295 5.34006 5.39470 5.49603 5.50611 5.56019 5.68122 5.77529 5.94196 6.03667 6.37211 6.51503 6.91988 7.27178 7.62880 8.65172 9.31394 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030597 B = 0.002037 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.896879 B =13740.846496 C =14350.961953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.604 5.604 3 C 0.135 3.865 4 C 0.137 3.863 5 H 0.049 0.951 6 C -0.125 4.125 7 C 0.151 3.849 8 N -0.628 5.628 9 C -0.220 4.220 10 H 0.093 0.907 11 C -0.075 4.075 12 N -0.958 5.958 13 Si 0.981 3.019 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.263 1.263 17 C 0.587 3.413 18 O -0.576 6.576 19 C -0.291 4.291 20 C 0.080 3.920 21 N -0.313 5.313 22 N -0.312 5.312 23 C 0.120 3.880 24 C -0.146 4.146 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.099 4.099 28 C -0.129 4.129 29 C 0.125 3.875 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.016 0.984 39 H 0.247 0.753 40 H 0.241 0.759 41 H 0.140 0.860 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.131 0.869 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.151 -29.797 -6.723 32.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.336 5.336 3 C 0.011 3.989 4 C 0.030 3.970 5 H 0.067 0.933 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.354 5.354 9 C -0.348 4.348 10 H 0.111 0.889 11 C -0.267 4.267 12 N -0.607 5.607 13 Si 0.809 3.191 14 H -0.212 1.212 15 H -0.225 1.225 16 H -0.188 1.188 17 C 0.377 3.623 18 O -0.456 6.456 19 C -0.305 4.305 20 C -0.107 4.107 21 N -0.130 5.130 22 N -0.084 5.084 23 C 0.029 3.971 24 C -0.167 4.167 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.117 4.117 28 C -0.149 4.149 29 C -0.024 4.024 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.034 0.966 39 H 0.055 0.945 40 H 0.256 0.744 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.149 0.851 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.413 -30.391 -6.916 33.549 hybrid contribution 0.876 2.207 0.234 2.386 sum -11.537 -28.184 -6.682 31.178 Atomic orbital electron populations 1.22646 0.77656 1.04832 1.03424 1.47601 1.08203 1.04740 1.73063 1.21447 0.96662 0.84096 0.96693 1.22503 0.94726 0.84364 0.95421 0.93326 1.23266 0.98039 0.95223 0.99762 1.21902 0.94998 0.89795 0.90843 1.45949 1.41356 1.07232 1.40908 1.19359 1.21246 0.84859 1.09358 0.88898 1.25736 1.00160 1.01611 0.99224 1.70064 1.31382 1.30347 1.28933 0.85031 0.76398 0.79200 0.78448 1.21249 1.22540 1.18789 1.17496 0.86117 0.83070 0.75658 1.90770 1.15210 1.87575 1.52052 1.20213 0.95288 0.92847 1.22162 1.25673 0.95296 0.94635 0.95104 1.77216 1.05337 1.05597 1.24870 1.45835 1.06222 1.04912 1.51456 1.17989 0.96745 0.77717 1.04615 1.21184 0.95211 0.97054 1.03222 1.21390 1.00784 0.91611 0.97470 1.21694 0.92055 1.01950 0.98312 1.21423 0.99509 0.93066 0.97722 1.21049 0.97539 0.94488 1.01805 1.23253 0.95832 0.88249 0.95021 0.89458 0.88769 0.89922 0.89825 0.92183 0.91406 0.91090 0.95218 0.96608 0.94456 0.74365 0.84182 0.82313 0.82416 0.82663 0.85073 0.77972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.63 127.77 1.10 2.08 16 2 N -0.60 -17.00 2.88 -850.69 -2.45 -19.45 16 3 C 0.14 4.84 5.31 86.38 0.46 5.30 16 4 C 0.14 5.77 4.30 41.79 0.18 5.95 16 5 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 6 C -0.12 -5.41 6.79 30.84 0.21 -5.20 16 7 C 0.15 7.83 7.25 83.09 0.60 8.44 16 8 N -0.63 -33.38 3.65 -714.43 -2.61 -35.98 16 9 C -0.22 -12.41 10.55 84.03 0.89 -11.52 16 10 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 11 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 12 N -0.96 -60.19 11.66 21.65 0.25 -59.93 16 13 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 14 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 C 0.59 17.99 7.63 86.66 0.66 18.65 16 18 O -0.58 -21.96 14.99 -4.05 -0.06 -22.02 16 19 C -0.29 -7.15 5.94 -20.14 -0.12 -7.27 16 20 C 0.08 1.58 9.88 85.66 0.85 2.43 16 21 N -0.31 -6.98 11.77 -56.23 -0.66 -7.64 16 22 N -0.31 -6.82 3.77 -186.20 -0.70 -7.53 16 23 C 0.12 2.21 6.68 38.10 0.25 2.47 16 24 C -0.15 -2.06 9.45 22.39 0.21 -1.85 16 25 C -0.09 -0.89 10.04 22.25 0.22 -0.66 16 26 C -0.12 -0.97 10.04 22.29 0.22 -0.75 16 27 C -0.10 -1.01 10.04 22.25 0.22 -0.78 16 28 C -0.13 -2.05 9.65 22.38 0.22 -1.83 16 29 C 0.12 2.81 10.61 84.24 0.89 3.71 16 30 H 0.09 1.07 7.38 -2.39 -0.02 1.05 16 31 H 0.09 1.35 5.27 -2.38 -0.01 1.34 16 32 H 0.08 1.43 8.03 -2.39 -0.02 1.42 16 33 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 34 H 0.06 2.45 7.36 -2.39 -0.02 2.43 16 35 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.07 3.27 7.58 -2.39 -0.02 3.25 16 37 H 0.03 1.71 7.40 -2.39 -0.02 1.70 16 38 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.25 15.04 8.31 -92.72 -0.77 14.27 16 40 H 0.24 2.98 4.46 -2.91 -0.01 2.97 16 41 H 0.14 1.65 6.71 -2.91 -0.02 1.63 16 42 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 43 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.13 2.19 7.68 -2.91 -0.02 2.16 16 46 H 0.20 3.81 7.01 -2.91 -0.02 3.79 16 Total: -1.00 -79.43 379.56 4.34 -75.09 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.00 Total: 13.80 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 7.54 Total: 15.26 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -6.17 Total: -130.53 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -79.43 4.34 -75.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085707035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.950 kcal (2) G-P(sol) polarization free energy of solvation -79.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds