Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99861 * 2 1 4 4 C 1.53001 * 109.46865 * 93.34075 * 3 2 1 5 5 H 1.08995 * 112.73793 * 316.40535 * 4 3 2 6 6 C 1.53500 * 113.52323 * 87.20225 * 4 3 2 7 7 C 1.53233 * 83.42930 * 140.68244 * 6 4 3 8 8 N 1.47064 * 88.08693 * 334.10445 * 7 6 4 9 9 C 1.36933 * 136.05638 * 207.20628 * 8 7 6 10 10 H 1.08000 * 119.99933 * 174.18286 * 9 8 7 11 11 C 1.38812 * 120.00092 * 353.90764 * 9 8 7 12 12 N 1.31614 * 119.99955 * 0.27803 * 11 9 8 13 13 Si 1.86801 * 119.99876 * 180.27441 * 11 9 8 14 14 H 1.48507 * 109.47017 * 60.00521 * 13 11 9 15 15 H 1.48505 * 109.47088 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47363 * 300.00091 * 13 11 9 17 17 C 1.34781 * 119.99777 * 180.02562 * 2 1 3 18 18 O 1.21565 * 119.99633 * 184.60119 * 17 2 1 19 19 C 1.47740 * 120.00045 * 4.59764 * 17 2 1 20 20 C 1.41172 * 126.33322 * 185.55976 * 19 17 2 21 21 C 1.36684 * 105.44819 * 179.97438 * 20 19 17 22 22 C 1.48010 * 126.59488 * 179.97438 * 21 20 19 23 23 C 1.39484 * 120.13610 * 359.72380 * 22 21 20 24 24 C 1.37987 * 119.85924 * 179.74128 * 23 22 21 25 25 C 1.38343 * 120.13596 * 0.51812 * 24 23 22 26 26 C 1.38342 * 120.27365 * 359.75964 * 25 24 23 27 27 C 1.37979 * 120.14274 * 359.97438 * 26 25 24 28 28 N 1.36364 * 106.80939 * 0.02562 * 21 20 19 29 29 H 0.96999 * 125.01714 * 180.02562 * 28 21 20 30 30 N 1.28461 * 109.97713 * 359.74681 * 28 21 20 31 31 H 1.09000 * 109.46697 * 354.82116 * 1 2 3 32 32 H 1.08990 * 109.47354 * 114.82318 * 1 2 3 33 33 H 1.09000 * 109.46874 * 234.82404 * 1 2 3 34 34 H 1.08997 * 109.47505 * 333.33525 * 3 2 1 35 35 H 1.09002 * 109.46935 * 213.33566 * 3 2 1 36 36 H 1.09004 * 114.20138 * 254.44376 * 6 4 3 37 37 H 1.08998 * 114.20326 * 27.06853 * 6 4 3 38 38 H 1.09004 * 113.38620 * 219.28881 * 7 6 4 39 39 H 1.09007 * 113.46823 * 88.92989 * 7 6 4 40 40 H 0.97005 * 119.99964 * 179.97438 * 12 11 9 41 41 H 1.08005 * 127.27635 * 359.97438 * 20 19 17 42 42 H 1.08002 * 120.07115 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.92994 * 180.23197 * 24 23 22 44 44 H 1.07999 * 119.86254 * 179.74227 * 25 24 23 45 45 H 1.08005 * 119.92783 * 179.97438 * 26 25 24 46 46 H 1.07991 * 120.07704 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5253 1.6683 1.4401 5 1 1.6853 1.5228 2.1192 6 6 3.8406 1.0699 1.9577 7 6 4.0049 2.4461 2.6113 8 7 3.1459 2.9969 1.5524 9 6 2.9947 4.2110 0.9373 10 1 2.3226 4.3110 0.0978 11 6 3.7008 5.3144 1.3964 12 7 4.5198 5.1924 2.4195 13 14 3.4887 6.9722 0.5622 14 1 2.0673 7.3932 0.6518 15 1 4.3461 7.9794 1.2373 16 1 3.8833 6.8623 -0.8651 17 6 2.1389 -1.1673 -0.0005 18 8 3.3516 -1.1690 0.0839 19 6 1.4037 -2.4446 -0.1037 20 6 1.9585 -3.7391 -0.0071 21 6 0.9069 -4.5984 -0.1620 22 6 0.9653 -6.0772 -0.1410 23 6 2.1851 -6.7273 0.0462 24 6 2.2322 -8.1062 0.0701 25 6 1.0745 -8.8437 -0.1018 26 6 -0.1375 -8.2048 -0.2936 27 6 -0.1985 -6.8265 -0.3141 28 7 -0.2062 -3.8312 -0.3408 29 1 -1.1031 -4.1748 -0.4761 30 7 0.1074 -2.5862 -0.2980 31 1 -0.3633 1.0235 0.0928 32 1 -0.3633 -0.4314 -0.9326 33 1 -0.3633 -0.5920 0.8400 34 1 1.5839 2.0426 -0.4612 35 1 3.1227 1.1541 -0.5648 36 1 3.7111 0.2498 2.6639 37 1 4.5715 0.8556 1.1779 38 1 5.0279 2.8209 2.5793 39 1 3.5630 2.5098 3.6058 40 1 5.0135 5.9634 2.7401 41 1 2.9949 -3.9962 0.1550 42 1 3.0903 -6.1526 0.1759 43 1 3.1755 -8.6106 0.2187 44 1 1.1170 -9.9228 -0.0864 45 1 -1.0378 -8.7861 -0.4277 46 1 -1.1451 -6.3289 -0.4644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085708873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = 138.087441 kcal Electronic energy + Delta-G solvation = -28293.319366 eV Core-core repulsion = 24380.113605 eV Total energy + Delta-G solvation = -3913.205762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.82076 -39.56639 -39.26054 -37.69647 -35.15139 -33.09357 -32.34767 -32.05784 -31.26140 -29.38870 -28.27753 -27.77464 -26.38491 -24.06346 -23.67607 -23.26160 -22.85344 -21.59498 -21.09744 -19.08406 -18.99965 -18.51713 -17.08050 -16.66640 -16.50076 -16.00396 -15.81805 -15.38134 -15.15356 -14.99809 -14.53113 -14.09623 -13.86943 -13.76362 -13.69818 -13.47831 -13.28020 -13.24913 -12.72182 -12.59136 -12.13549 -11.85674 -11.83984 -11.52191 -11.36363 -10.98369 -10.89603 -10.78778 -10.66514 -10.34553 -10.33295 -9.87957 -9.69588 -9.66768 -9.54734 -9.45412 -9.29624 -8.69963 -8.52891 -8.15245 -6.76577 -5.68277 -2.99905 0.42630 0.90866 1.57668 2.11180 2.49301 3.22815 3.40075 3.44395 3.48103 3.49718 3.55129 4.03963 4.23675 4.38214 4.44970 4.53532 4.64712 4.83034 4.95452 5.05468 5.19965 5.31634 5.44409 5.46494 5.46755 5.54173 5.54679 5.71312 5.74363 5.91828 5.95888 6.01433 6.02454 6.03399 6.11341 6.16085 6.19685 6.43807 6.52998 6.64724 6.71707 6.79697 6.94104 6.96154 7.36527 7.54966 7.62226 7.69188 7.71246 8.07316 8.42798 9.11987 9.79056 10.76603 11.49865 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.002004 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.668090 B =13970.596110 C =14554.675341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.598 5.598 3 C 0.118 3.882 4 C 0.130 3.870 5 H 0.040 0.960 6 C -0.151 4.151 7 C 0.155 3.845 8 N -0.602 5.602 9 C -0.217 4.217 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.594 3.406 18 O -0.520 6.520 19 C 0.000 4.000 20 C -0.153 4.153 21 C 0.047 3.953 22 C -0.017 4.017 23 C -0.095 4.095 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.118 4.118 28 N -0.383 5.383 29 H 0.443 0.557 30 N -0.243 5.243 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.023 0.977 40 H 0.253 0.747 41 H 0.166 0.834 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -29.192 -5.899 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.331 5.331 3 C -0.005 4.005 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.190 4.190 7 C 0.029 3.971 8 N -0.328 5.328 9 C -0.344 4.344 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.379 3.621 18 O -0.394 6.394 19 C -0.160 4.160 20 C -0.181 4.181 21 C -0.078 4.078 22 C -0.018 4.018 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.137 4.137 28 N -0.098 5.098 29 H 0.288 0.712 30 N -0.080 5.080 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.184 0.816 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.855 -28.086 -6.050 31.081 hybrid contribution -0.277 0.361 -0.224 0.507 sum -12.132 -27.725 -6.274 30.907 Atomic orbital electron populations 1.21816 0.79145 1.02287 1.02073 1.47747 1.07286 1.06061 1.71995 1.21976 0.96951 0.82105 0.99487 1.22453 0.95015 0.87166 0.93192 0.94296 1.23559 0.98055 0.96888 1.00459 1.21935 0.96716 0.87642 0.90778 1.45627 1.40640 1.05506 1.41007 1.18830 1.22385 0.83862 1.09362 0.90344 1.24813 0.99960 0.97649 0.98061 1.69847 1.30278 1.29493 1.26883 0.86233 0.77331 0.83758 0.78631 1.21274 1.21619 1.21088 1.16877 0.86253 0.81526 0.77448 1.90816 1.12622 1.86289 1.49655 1.21998 0.89774 0.95508 1.08722 1.21726 0.99902 0.90043 1.06428 1.19857 0.87588 0.91600 1.08706 1.17925 0.94410 0.87966 1.01537 1.21218 0.96953 0.94644 0.98616 1.21154 0.98792 0.93634 0.99397 1.21285 0.92658 1.00218 0.99435 1.21044 0.98220 0.94044 0.99858 1.21058 0.97002 0.94406 1.01218 1.43619 1.10113 1.03151 1.52959 0.71210 1.73784 1.16444 0.99281 1.18456 0.90888 0.91807 0.92059 0.90573 0.89742 0.93266 0.89910 0.91843 0.95926 0.93675 0.81647 0.84931 0.85305 0.85744 0.85640 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 9.06 59.85 0.54 1.71 16 2 N -0.60 -9.76 2.88 -182.73 -0.53 -10.29 16 3 C 0.12 2.25 5.31 -4.04 -0.02 2.23 16 4 C 0.13 2.85 4.30 -72.40 -0.31 2.53 16 5 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.15 -3.31 6.86 -26.35 -0.18 -3.49 16 7 C 0.15 3.95 7.25 -8.65 -0.06 3.89 16 8 N -0.60 -16.04 3.65 -177.17 -0.65 -16.69 16 9 C -0.22 -6.17 10.55 -15.06 -0.16 -6.33 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -28.17 11.66 55.49 0.65 -27.52 16 13 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.59 10.05 7.65 -12.38 -0.09 9.96 16 18 O -0.52 -10.24 15.16 5.31 0.08 -10.16 16 19 C 0.00 0.00 6.83 -82.87 -0.57 -0.56 16 20 C -0.15 -1.83 10.16 -39.03 -0.40 -2.23 16 21 C 0.05 0.45 6.98 -82.41 -0.58 -0.13 16 22 C -0.02 -0.13 5.87 -104.96 -0.62 -0.75 16 23 C -0.10 -0.70 9.58 -39.21 -0.38 -1.08 16 24 C -0.11 -0.67 10.03 -39.63 -0.40 -1.07 16 25 C -0.12 -0.64 10.04 -39.50 -0.40 -1.03 16 26 C -0.11 -0.61 10.03 -39.64 -0.40 -1.01 16 27 C -0.12 -0.73 9.71 -39.21 -0.38 -1.11 16 28 N -0.38 -3.33 6.80 33.31 0.23 -3.11 16 29 H 0.44 2.20 8.08 -190.45 -1.54 0.66 16 30 N -0.24 -2.83 8.91 33.37 0.30 -2.54 16 31 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 32 H 0.06 0.75 7.23 -51.93 -0.38 0.37 16 33 H 0.06 0.76 7.37 -51.93 -0.38 0.38 16 34 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 35 H 0.08 1.75 7.32 -51.93 -0.38 1.37 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.88 7.65 -51.93 -0.40 1.48 16 38 H 0.06 1.76 7.40 -51.93 -0.38 1.37 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.17 1.82 7.39 -52.48 -0.39 1.43 16 42 H 0.13 0.88 7.10 -52.49 -0.37 0.50 16 43 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 44 H 0.12 0.42 8.06 -52.49 -0.42 -0.01 16 45 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 46 H 0.12 0.46 7.19 -52.49 -0.38 0.08 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -35.26 382.83 -11.16 -46.42 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.49 Total: -0.59 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -4.49 Total: 1.20 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.00 Total: -60.14 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.26 -11.16 -46.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085708873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.504 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds