Wall clock time and date at job start Sat Apr 11 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99861 * 2 1 4 4 C 1.53001 * 109.46865 * 93.34075 * 3 2 1 5 5 H 1.08995 * 112.73793 * 316.40535 * 4 3 2 6 6 C 1.53500 * 113.52323 * 87.20225 * 4 3 2 7 7 C 1.53233 * 83.42930 * 140.68244 * 6 4 3 8 8 N 1.47064 * 88.08693 * 334.10445 * 7 6 4 9 9 C 1.36933 * 136.05638 * 207.20628 * 8 7 6 10 10 H 1.08000 * 119.99933 * 174.18286 * 9 8 7 11 11 C 1.38812 * 120.00092 * 353.90764 * 9 8 7 12 12 N 1.31614 * 119.99955 * 0.27803 * 11 9 8 13 13 Si 1.86801 * 119.99876 * 180.27441 * 11 9 8 14 14 H 1.48507 * 109.47017 * 60.00521 * 13 11 9 15 15 H 1.48505 * 109.47088 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47363 * 300.00091 * 13 11 9 17 17 C 1.34781 * 119.99777 * 180.02562 * 2 1 3 18 18 O 1.21565 * 119.99633 * 184.60119 * 17 2 1 19 19 C 1.47740 * 120.00045 * 4.59764 * 17 2 1 20 20 C 1.41172 * 126.33322 * 185.55976 * 19 17 2 21 21 C 1.36684 * 105.44819 * 179.97438 * 20 19 17 22 22 C 1.48010 * 126.59488 * 179.97438 * 21 20 19 23 23 C 1.39484 * 120.13610 * 359.72380 * 22 21 20 24 24 C 1.37987 * 119.85924 * 179.74128 * 23 22 21 25 25 C 1.38343 * 120.13596 * 0.51812 * 24 23 22 26 26 C 1.38342 * 120.27365 * 359.75964 * 25 24 23 27 27 C 1.37979 * 120.14274 * 359.97438 * 26 25 24 28 28 N 1.36364 * 106.80939 * 0.02562 * 21 20 19 29 29 H 0.96999 * 125.01714 * 180.02562 * 28 21 20 30 30 N 1.28461 * 109.97713 * 359.74681 * 28 21 20 31 31 H 1.09000 * 109.46697 * 354.82116 * 1 2 3 32 32 H 1.08990 * 109.47354 * 114.82318 * 1 2 3 33 33 H 1.09000 * 109.46874 * 234.82404 * 1 2 3 34 34 H 1.08997 * 109.47505 * 333.33525 * 3 2 1 35 35 H 1.09002 * 109.46935 * 213.33566 * 3 2 1 36 36 H 1.09004 * 114.20138 * 254.44376 * 6 4 3 37 37 H 1.08998 * 114.20326 * 27.06853 * 6 4 3 38 38 H 1.09004 * 113.38620 * 219.28881 * 7 6 4 39 39 H 1.09007 * 113.46823 * 88.92989 * 7 6 4 40 40 H 0.97005 * 119.99964 * 179.97438 * 12 11 9 41 41 H 1.08005 * 127.27635 * 359.97438 * 20 19 17 42 42 H 1.08002 * 120.07115 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.92994 * 180.23197 * 24 23 22 44 44 H 1.07999 * 119.86254 * 179.74227 * 25 24 23 45 45 H 1.08005 * 119.92783 * 179.97438 * 26 25 24 46 46 H 1.07991 * 120.07704 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5253 1.6683 1.4401 5 1 1.6853 1.5228 2.1192 6 6 3.8406 1.0699 1.9577 7 6 4.0049 2.4461 2.6113 8 7 3.1459 2.9969 1.5524 9 6 2.9947 4.2110 0.9373 10 1 2.3226 4.3110 0.0978 11 6 3.7008 5.3144 1.3964 12 7 4.5198 5.1924 2.4195 13 14 3.4887 6.9722 0.5622 14 1 2.0673 7.3932 0.6518 15 1 4.3461 7.9794 1.2373 16 1 3.8833 6.8623 -0.8651 17 6 2.1389 -1.1673 -0.0005 18 8 3.3516 -1.1690 0.0839 19 6 1.4037 -2.4446 -0.1037 20 6 1.9585 -3.7391 -0.0071 21 6 0.9069 -4.5984 -0.1620 22 6 0.9653 -6.0772 -0.1410 23 6 2.1851 -6.7273 0.0462 24 6 2.2322 -8.1062 0.0701 25 6 1.0745 -8.8437 -0.1018 26 6 -0.1375 -8.2048 -0.2936 27 6 -0.1985 -6.8265 -0.3141 28 7 -0.2062 -3.8312 -0.3408 29 1 -1.1031 -4.1748 -0.4761 30 7 0.1074 -2.5862 -0.2980 31 1 -0.3633 1.0235 0.0928 32 1 -0.3633 -0.4314 -0.9326 33 1 -0.3633 -0.5920 0.8400 34 1 1.5839 2.0426 -0.4612 35 1 3.1227 1.1541 -0.5648 36 1 3.7111 0.2498 2.6639 37 1 4.5715 0.8556 1.1779 38 1 5.0279 2.8209 2.5793 39 1 3.5630 2.5098 3.6058 40 1 5.0135 5.9634 2.7401 41 1 2.9949 -3.9962 0.1550 42 1 3.0903 -6.1526 0.1759 43 1 3.1755 -8.6106 0.2187 44 1 1.1170 -9.9228 -0.0864 45 1 -1.0378 -8.7861 -0.4277 46 1 -1.1451 -6.3289 -0.4644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085708873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:53 Heat of formation + Delta-G solvation = 116.691782 kcal Electronic energy + Delta-G solvation = -28294.247152 eV Core-core repulsion = 24380.113605 eV Total energy + Delta-G solvation = -3914.133547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.67448 -40.90728 -39.84803 -39.46053 -36.51588 -34.28343 -33.72335 -33.14458 -31.77193 -30.33667 -29.90061 -29.48754 -27.55905 -25.49761 -25.13525 -24.30867 -23.67200 -22.86622 -21.84177 -21.00870 -20.03940 -19.36061 -18.69507 -17.99423 -17.36134 -17.09467 -17.05896 -16.68659 -16.11661 -15.96657 -15.77602 -15.70178 -15.13495 -15.06408 -14.69146 -14.26246 -14.23210 -14.00856 -13.87134 -13.79648 -13.77241 -13.42244 -13.18584 -12.94697 -12.61977 -12.53817 -12.35005 -12.26336 -11.94698 -11.82016 -11.77693 -11.65161 -11.18733 -11.09681 -10.98198 -10.82922 -10.46644 -9.88723 -9.60669 -9.16764 -8.89759 -7.88062 -5.21906 -0.14217 0.47647 0.53932 1.39350 1.46233 1.50968 1.56556 1.70510 2.04245 2.34403 2.50449 2.94078 3.15999 3.33305 3.47102 3.50824 3.80044 3.90694 4.04879 4.09428 4.25586 4.27979 4.35044 4.36797 4.41051 4.46730 4.47210 4.55855 4.67627 4.78103 4.81790 4.89517 4.96160 4.98148 5.06013 5.08204 5.11210 5.21029 5.24456 5.46791 5.49634 5.52112 5.54452 5.60877 5.73929 5.93192 5.97035 6.04619 6.39097 6.75527 6.91372 7.14718 7.62023 8.64260 9.30798 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031254 B = 0.002004 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.668090 B =13970.596110 C =14554.675341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.599 5.599 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.048 0.952 6 C -0.127 4.127 7 C 0.152 3.848 8 N -0.627 5.627 9 C -0.224 4.224 10 H 0.092 0.908 11 C -0.073 4.073 12 N -0.957 5.957 13 Si 0.982 3.018 14 H -0.274 1.274 15 H -0.297 1.297 16 H -0.275 1.275 17 C 0.590 3.410 18 O -0.558 6.558 19 C -0.026 4.026 20 C -0.177 4.177 21 C 0.068 3.932 22 C -0.040 4.040 23 C -0.109 4.109 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.117 4.117 28 N -0.362 5.362 29 H 0.461 0.539 30 N -0.241 5.241 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.247 0.753 41 H 0.164 0.836 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 -31.531 -7.083 35.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.331 5.331 3 C 0.008 3.992 4 C 0.029 3.971 5 H 0.065 0.935 6 C -0.165 4.165 7 C 0.026 3.974 8 N -0.354 5.354 9 C -0.352 4.352 10 H 0.110 0.890 11 C -0.266 4.266 12 N -0.606 5.606 13 Si 0.810 3.190 14 H -0.200 1.200 15 H -0.223 1.223 16 H -0.201 1.201 17 C 0.377 3.623 18 O -0.435 6.435 19 C -0.184 4.184 20 C -0.205 4.205 21 C -0.057 4.057 22 C -0.042 4.042 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.136 4.136 28 N -0.080 5.080 29 H 0.310 0.690 30 N -0.078 5.078 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.181 0.819 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.795 -30.466 -7.258 34.637 hybrid contribution 0.547 0.843 0.148 1.016 sum -14.249 -29.623 -7.110 33.632 Atomic orbital electron populations 1.21972 0.76803 1.03102 1.03186 1.47760 1.08582 1.04874 1.71839 1.21555 0.96762 0.83769 0.97067 1.22498 0.94872 0.84568 0.95119 0.93510 1.23297 0.97843 0.95477 0.99884 1.21888 0.94919 0.89718 0.90837 1.45937 1.41694 1.06574 1.41146 1.19312 1.21750 0.84591 1.09527 0.89035 1.25740 1.00119 1.01560 0.99140 1.70055 1.31644 1.30078 1.28814 0.85097 0.77504 0.78724 0.77678 1.19965 1.22344 1.20063 1.17293 0.86053 0.82483 0.76442 1.90783 1.14342 1.87005 1.51382 1.21568 0.90741 0.94585 1.11517 1.21807 1.00731 0.89901 1.08018 1.19966 0.86876 0.92325 1.06517 1.17979 0.95488 0.86920 1.03836 1.21375 0.96966 0.95508 0.99019 1.21404 1.00023 0.93180 0.99325 1.21662 0.92410 1.01498 0.97890 1.21406 0.99214 0.93972 0.99082 1.21364 0.97228 0.94934 1.00092 1.43665 1.10944 1.02272 1.51127 0.68970 1.73682 1.15226 1.00547 1.18376 0.90134 0.90339 0.91300 0.89799 0.91781 0.91305 0.90936 0.95007 0.96525 0.94382 0.81853 0.85262 0.83807 0.83527 0.83186 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 9.06 127.77 1.16 3.35 16 2 N -0.60 -19.16 2.88 -850.31 -2.45 -21.61 16 3 C 0.13 5.06 5.31 86.38 0.46 5.51 16 4 C 0.14 5.99 4.30 41.79 0.18 6.17 16 5 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 6 C -0.13 -5.65 6.86 30.84 0.21 -5.44 16 7 C 0.15 8.04 7.25 83.09 0.60 8.64 16 8 N -0.63 -34.00 3.65 -714.43 -2.61 -36.61 16 9 C -0.22 -12.83 10.55 84.03 0.89 -11.94 16 10 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 11 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 12 N -0.96 -60.48 11.66 21.65 0.25 -60.22 16 13 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 15 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 C 0.59 20.07 7.65 86.75 0.66 20.74 16 18 O -0.56 -22.64 15.16 -3.92 -0.06 -22.70 16 19 C -0.03 -0.70 6.83 42.38 0.29 -0.41 16 20 C -0.18 -4.21 10.16 22.63 0.23 -3.98 16 21 C 0.07 1.21 6.98 40.67 0.28 1.49 16 22 C -0.04 -0.57 5.87 -20.08 -0.12 -0.69 16 23 C -0.11 -1.51 9.58 22.51 0.22 -1.30 16 24 C -0.12 -1.25 10.03 22.24 0.22 -1.02 16 25 C -0.12 -0.92 10.04 22.32 0.22 -0.70 16 26 C -0.12 -0.89 10.03 22.23 0.22 -0.66 16 27 C -0.12 -1.10 9.71 22.51 0.22 -0.88 16 28 N -0.36 -5.45 6.80 -48.51 -0.33 -5.78 16 29 H 0.46 3.07 8.08 -220.00 -1.78 1.29 16 30 N -0.24 -5.17 8.91 -48.35 -0.43 -5.60 16 31 H 0.08 1.81 7.80 -2.39 -0.02 1.79 16 32 H 0.08 1.66 7.23 -2.39 -0.02 1.65 16 33 H 0.07 1.56 7.37 -2.39 -0.02 1.54 16 34 H 0.08 3.06 7.90 -2.39 -0.02 3.04 16 35 H 0.06 2.72 7.32 -2.39 -0.02 2.70 16 36 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 37 H 0.07 3.40 7.65 -2.39 -0.02 3.38 16 38 H 0.03 1.85 7.40 -2.38 -0.02 1.83 16 39 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 41 H 0.16 3.77 7.39 -2.91 -0.02 3.75 16 42 H 0.13 1.75 7.10 -2.91 -0.02 1.73 16 43 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.15 0.47 8.06 -2.91 -0.02 0.44 16 45 H 0.15 0.36 8.06 -2.91 -0.02 0.33 16 46 H 0.14 0.55 7.19 -2.92 -0.02 0.52 16 Total: -1.00 -78.04 382.83 2.06 -75.98 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.77 Total: 12.65 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.42 Total: 15.05 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -5.56 Total: -129.82 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.04 2.06 -75.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085708873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.676 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds