Wall clock time and date at job start Sat Apr 11 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99818 * 2 1 4 4 C 1.52997 * 109.46997 * 274.51259 * 3 2 1 5 5 H 1.09003 * 112.74066 * 315.93406 * 4 3 2 6 6 C 1.53495 * 113.46693 * 86.67779 * 4 3 2 7 7 C 1.53617 * 83.30390 * 140.83155 * 6 4 3 8 8 N 1.47064 * 88.00577 * 333.97840 * 7 6 4 9 9 C 1.36940 * 136.05953 * 207.04388 * 8 7 6 10 10 H 1.07996 * 119.99875 * 184.89680 * 9 8 7 11 11 C 1.38808 * 119.99972 * 4.89096 * 9 8 7 12 12 N 1.31619 * 120.00115 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00182 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47251 * 89.99952 * 13 11 9 15 15 H 1.48498 * 109.47634 * 210.00209 * 13 11 9 16 16 H 1.48498 * 109.46999 * 330.00401 * 13 11 9 17 17 C 1.34778 * 120.00185 * 179.97438 * 2 1 3 18 18 O 1.21572 * 119.99940 * 175.29282 * 17 2 1 19 19 C 1.47660 * 119.99863 * 355.57233 * 17 2 1 20 20 C 1.39705 * 120.07748 * 337.17469 * 19 17 2 21 21 C 1.37730 * 119.91296 * 179.69607 * 20 19 17 22 22 C 1.39034 * 120.08321 * 0.58479 * 21 20 19 23 23 N 1.39861 * 119.92487 * 179.69780 * 22 21 20 24 24 C 1.37163 * 126.48003 * 0.02562 * 23 22 21 25 25 C 1.34624 * 106.83105 * 180.02562 * 24 23 22 26 26 N 1.34156 * 108.21215 * 359.97438 * 25 24 23 27 27 C 1.30487 * 109.36626 * 359.72818 * 26 25 24 28 28 C 1.39046 * 120.15657 * 359.71328 * 22 21 20 29 29 C 1.37718 * 120.08195 * 359.97438 * 28 22 21 30 30 H 1.09003 * 109.47063 * 276.04202 * 1 2 3 31 31 H 1.08998 * 109.47476 * 36.04071 * 1 2 3 32 32 H 1.09004 * 109.46864 * 156.04659 * 1 2 3 33 33 H 1.09001 * 109.46947 * 34.50940 * 3 2 1 34 34 H 1.09001 * 109.47265 * 154.51189 * 3 2 1 35 35 H 1.09004 * 114.20365 * 254.43047 * 6 4 3 36 36 H 1.08997 * 114.21128 * 27.25946 * 6 4 3 37 37 H 1.09004 * 113.50407 * 219.18296 * 7 6 4 38 38 H 1.09001 * 113.46956 * 88.76752 * 7 6 4 39 39 H 0.97002 * 120.00351 * 179.97438 * 12 11 9 40 40 H 1.07998 * 120.04554 * 359.97438 * 20 19 17 41 41 H 1.08008 * 119.95712 * 180.27481 * 21 20 19 42 42 H 1.08002 * 126.58480 * 0.03979 * 24 23 22 43 43 H 1.07998 * 125.89822 * 179.97438 * 25 24 23 44 44 H 1.08008 * 125.72107 * 180.26302 * 27 26 25 45 45 H 1.08003 * 119.95932 * 180.02562 * 28 22 21 46 46 H 1.08007 * 120.04129 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3541 1.7672 -1.4380 5 1 2.6440 0.9756 -2.1291 6 6 1.1628 2.6013 -1.9290 7 6 2.2596 3.4457 -2.5954 8 7 3.1833 2.9765 -1.5517 9 6 4.3170 3.4548 -0.9506 10 1 4.8516 2.8413 -0.2406 11 6 4.7789 4.7281 -1.2540 12 7 4.1271 5.4759 -2.1190 13 14 6.3257 5.3804 -0.4347 14 1 7.5095 5.0246 -1.2576 15 1 6.2350 6.8574 -0.3105 16 1 6.4624 4.7776 0.9156 17 6 2.1389 -1.1672 0.0005 18 8 3.3515 -1.1690 -0.0859 19 6 1.4039 -2.4440 0.0998 20 6 0.1232 -2.4732 0.6572 21 6 -0.5618 -3.6650 0.7424 22 6 0.0245 -4.8400 0.2857 23 7 -0.6716 -6.0494 0.3797 24 6 -1.9303 -6.2280 0.8947 25 6 -2.2110 -7.5406 0.7915 26 7 -1.1574 -8.1518 0.2294 27 6 -0.2314 -7.2691 -0.0276 28 6 1.3015 -4.8157 -0.2639 29 6 1.9899 -3.6267 -0.3583 30 1 -0.3633 0.1082 1.0220 31 1 -0.3634 0.8309 -0.6046 32 1 -0.3633 -0.9392 -0.4172 33 1 1.6457 2.0068 0.5822 34 1 3.1825 1.1197 0.4422 35 1 0.5112 2.0802 -2.6304 36 1 0.6213 3.1172 -1.1362 37 1 2.0675 4.5179 -2.5551 38 1 2.5242 3.1024 -3.5956 39 1 4.4497 6.3659 -2.3308 40 1 -0.3309 -1.5616 1.0167 41 1 -1.5537 -3.6876 1.1692 42 1 -2.5728 -5.4626 1.3041 43 1 -3.1265 -8.0191 1.1067 44 1 0.7258 -7.4738 -0.4841 45 1 1.7537 -5.7303 -0.6181 46 1 2.9816 -3.6085 -0.7857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085746183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:03 Heat of formation + Delta-G solvation = 153.205386 kcal Electronic energy + Delta-G solvation = -28379.544043 eV Core-core repulsion = 24466.993845 eV Total energy + Delta-G solvation = -3912.550198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.76356 -40.63771 -38.87162 -37.89520 -35.58757 -34.48366 -32.24102 -31.87991 -30.42426 -29.90201 -28.28483 -27.93043 -26.79974 -24.38064 -23.74472 -23.43554 -22.39031 -21.33492 -21.01567 -19.87923 -19.22114 -18.96794 -17.47409 -16.78380 -16.40003 -15.95711 -15.70161 -15.54254 -15.22125 -14.96916 -14.55775 -14.41651 -14.19385 -14.11721 -13.97206 -13.70291 -13.56608 -13.21399 -13.01922 -12.89580 -12.63111 -12.23595 -11.87643 -11.56133 -11.32503 -11.17759 -10.98377 -10.88784 -10.74502 -10.54526 -10.46101 -9.94822 -9.81196 -9.79655 -9.59155 -9.47427 -9.17945 -8.77747 -8.73623 -8.38406 -6.87180 -5.74928 -3.08718 0.11489 0.78926 1.68466 2.17494 2.64686 2.75217 2.98894 3.40605 3.45760 3.46052 3.47345 4.06229 4.14384 4.22629 4.29722 4.41033 4.47116 4.67084 4.70597 4.92719 4.94381 5.10907 5.16405 5.18214 5.19945 5.39593 5.40877 5.43888 5.48256 5.58652 5.63581 5.75065 5.87450 5.92571 5.93690 6.11602 6.15946 6.25819 6.26142 6.39360 6.48217 6.65282 6.75805 6.81163 7.23138 7.41018 7.43572 7.52703 7.59220 8.00566 8.19168 9.05536 9.71981 10.64920 11.41583 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.002028 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.086015 B =13803.077315 C =14268.226591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.601 5.601 3 C 0.115 3.885 4 C 0.135 3.865 5 H 0.044 0.956 6 C -0.168 4.168 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.215 4.215 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.912 3.088 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.550 3.450 18 O -0.527 6.527 19 C -0.131 4.131 20 C -0.080 4.080 21 C -0.143 4.143 22 C 0.151 3.849 23 N -0.412 5.412 24 C -0.053 4.053 25 C -0.023 4.023 26 N -0.486 5.486 27 C 0.191 3.809 28 C -0.142 4.142 29 C -0.033 4.033 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.021 0.979 39 H 0.253 0.747 40 H 0.162 0.838 41 H 0.136 0.864 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.210 0.790 45 H 0.138 0.862 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.933 -20.583 5.746 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.334 5.334 3 C -0.008 4.008 4 C 0.026 3.974 5 H 0.061 0.939 6 C -0.206 4.206 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.342 4.342 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.742 3.258 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.205 1.205 17 C 0.338 3.662 18 O -0.404 6.404 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.163 4.163 22 C 0.058 3.942 23 N -0.091 5.091 24 C -0.182 4.182 25 C -0.168 4.168 26 N -0.202 5.202 27 C -0.090 4.090 28 C -0.162 4.162 29 C -0.052 4.052 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.179 0.821 41 H 0.154 0.846 42 H 0.197 0.803 43 H 0.192 0.808 44 H 0.227 0.773 45 H 0.156 0.844 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.941 -21.080 5.625 26.443 hybrid contribution 0.752 1.191 0.418 1.469 sum -14.189 -19.889 6.043 25.168 Atomic orbital electron populations 1.22502 0.80390 1.04050 1.01474 1.47760 1.06749 1.06445 1.72410 1.21962 0.97435 0.81998 0.99412 1.22412 0.90410 0.91138 0.93418 0.93912 1.23767 0.96269 0.99934 1.00652 1.22110 0.85495 0.99461 0.90680 1.45645 1.28853 1.16754 1.41312 1.18928 0.99732 0.97020 1.18554 0.90206 1.24786 0.99422 0.96573 0.99660 1.69825 1.40298 1.10109 1.36470 0.86118 0.82734 0.77992 0.78940 1.21624 1.21647 1.20545 1.18202 0.87196 0.83392 0.77445 1.90837 1.13448 1.86922 1.49162 1.20137 0.95379 0.94511 1.03427 1.22160 0.93108 0.98756 0.95812 1.20815 1.01348 0.90691 1.03404 1.18030 0.92413 0.84275 0.99529 1.43251 1.13826 1.07096 1.44923 1.22827 0.87640 1.00042 1.07731 1.22404 0.99217 0.90801 1.04417 1.70350 1.01474 1.31867 1.16540 1.25365 1.01378 0.78937 1.03298 1.20779 0.92981 0.99551 1.02893 1.21163 0.99697 0.89887 0.94470 0.92088 0.90319 0.89767 0.90200 0.89563 0.92856 0.90482 0.90500 0.96145 0.93719 0.82129 0.84600 0.80342 0.80757 0.77333 0.84443 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.71 59.85 0.52 1.04 16 2 N -0.60 -8.26 2.87 -182.76 -0.53 -8.78 16 3 C 0.11 2.01 5.40 -4.04 -0.02 1.99 16 4 C 0.13 2.73 4.31 -72.40 -0.31 2.42 16 5 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.17 -3.01 7.10 -26.15 -0.19 -3.20 16 7 C 0.15 3.48 7.52 -8.45 -0.06 3.41 16 8 N -0.60 -15.36 3.65 -176.80 -0.64 -16.01 16 9 C -0.22 -6.06 10.55 -15.06 -0.16 -6.22 16 10 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -27.36 11.43 55.49 0.63 -26.72 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 C 0.55 8.18 7.51 -12.41 -0.09 8.09 16 18 O -0.53 -10.19 16.11 5.30 0.09 -10.10 16 19 C -0.13 -1.43 5.56 -104.95 -0.58 -2.01 16 20 C -0.08 -0.63 7.53 -39.22 -0.30 -0.92 16 21 C -0.14 -0.99 9.45 -39.47 -0.37 -1.36 16 22 C 0.15 1.19 6.64 -83.60 -0.55 0.64 16 23 N -0.41 -3.31 2.98 -62.06 -0.19 -3.49 16 24 C -0.05 -0.37 10.85 -16.45 -0.18 -0.55 16 25 C -0.02 -0.19 11.85 -17.81 -0.21 -0.40 16 26 N -0.49 -4.96 11.24 -14.46 -0.16 -5.12 16 27 C 0.19 1.59 11.91 -89.59 -1.07 0.53 16 28 C -0.14 -1.11 9.45 -39.47 -0.37 -1.49 16 29 C -0.03 -0.32 9.58 -39.22 -0.38 -0.70 16 30 H 0.06 0.40 7.22 -51.93 -0.37 0.03 16 31 H 0.08 0.70 7.16 -51.93 -0.37 0.33 16 32 H 0.08 0.60 4.92 -51.93 -0.26 0.35 16 33 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 34 H 0.09 1.77 7.36 -51.93 -0.38 1.39 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.31 7.94 -51.93 -0.41 0.90 16 37 H 0.08 1.99 6.93 -51.93 -0.36 1.63 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.16 0.97 4.23 -52.49 -0.22 0.75 16 41 H 0.14 0.61 6.79 -52.48 -0.36 0.25 16 42 H 0.18 0.71 7.13 -52.49 -0.37 0.33 16 43 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.21 1.06 7.05 -52.48 -0.37 0.69 16 45 H 0.14 0.74 6.75 -52.48 -0.35 0.39 16 46 H 0.15 1.48 7.81 -52.48 -0.41 1.07 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -36.25 376.27 -10.46 -46.71 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.89 Total: -0.48 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.42 Total: 0.93 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.88 Total: -60.12 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.25 -10.46 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085746183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.916 kcal (2) G-P(sol) polarization free energy of solvation -36.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds