Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00045 * 2 1 4 4 C 1.52992 * 109.46987 * 277.34483 * 3 2 1 5 5 H 1.09003 * 112.96695 * 53.13091 * 4 3 2 6 6 C 1.53944 * 113.77240 * 184.80521 * 4 3 2 7 7 C 1.53940 * 86.29259 * 137.91154 * 6 4 3 8 8 N 1.47579 * 113.77414 * 281.30315 * 4 3 2 9 9 C 1.36936 * 134.49321 * 41.05716 * 8 4 3 10 10 H 1.08001 * 119.99590 * 15.30015 * 9 8 4 11 11 C 1.38810 * 119.99959 * 195.30312 * 9 8 4 12 12 N 1.31624 * 120.00245 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99950 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46831 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46980 * 120.00018 * 13 11 9 16 16 H 1.48500 * 109.47471 * 240.00030 * 13 11 9 17 17 C 1.34777 * 120.00142 * 179.97438 * 2 1 3 18 18 O 1.21696 * 120.00061 * 180.23215 * 17 2 1 19 19 C 1.46659 * 119.99745 * 0.23890 * 17 2 1 20 20 C 1.37828 * 126.81920 * 171.03214 * 19 17 2 21 21 N 1.32972 * 107.98674 * 179.73542 * 20 19 17 22 22 C 1.31796 * 109.77655 * 359.97438 * 21 20 19 23 23 C 1.47824 * 125.50458 * 179.97438 * 22 21 20 24 24 C 1.39581 * 120.14070 * 179.70195 * 23 22 21 25 25 C 1.37958 * 119.84732 * 179.70135 * 24 23 22 26 26 C 1.38365 * 120.14933 * 0.59885 * 25 24 23 27 27 C 1.38361 * 120.28977 * 359.67387 * 26 25 24 28 28 C 1.37956 * 120.14779 * 0.02562 * 27 26 25 29 29 N 1.35897 * 108.98304 * 0.02562 * 22 21 20 30 30 H 0.97006 * 126.55019 * 180.02562 * 29 22 21 31 31 H 1.09001 * 109.47029 * 263.74471 * 1 2 3 32 32 H 1.09007 * 109.46619 * 23.73885 * 1 2 3 33 33 H 1.08995 * 109.47127 * 143.73953 * 1 2 3 34 34 H 1.08998 * 109.47320 * 37.34920 * 3 2 1 35 35 H 1.09003 * 109.46788 * 157.35093 * 3 2 1 36 36 H 1.09002 * 113.74293 * 252.25819 * 6 4 3 37 37 H 1.09000 * 113.73708 * 23.45723 * 6 4 3 38 38 H 1.08997 * 113.77078 * 90.69583 * 7 6 4 39 39 H 1.08995 * 113.76857 * 221.98099 * 7 6 4 40 40 H 0.96998 * 119.99997 * 180.02562 * 12 11 9 41 41 H 1.07996 * 126.00756 * 359.77041 * 20 19 17 42 42 H 1.07993 * 120.07971 * 359.97438 * 24 23 22 43 43 H 1.08003 * 119.92552 * 180.29774 * 25 24 23 44 44 H 1.07997 * 119.85585 * 179.70012 * 26 25 24 45 45 H 1.08001 * 119.92483 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.07767 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2928 1.8026 -1.4306 5 1 1.3236 1.8703 -1.9247 6 6 3.1464 3.0769 -1.5619 7 6 3.7278 2.4361 -2.8351 8 7 3.3328 1.1429 -2.2437 9 6 3.7598 -0.1498 -2.3906 10 1 3.1499 -0.9643 -2.0286 11 6 4.9766 -0.4134 -3.0045 12 7 5.7201 0.5794 -3.4451 13 14 5.5594 -2.1769 -3.2042 14 1 4.5487 -3.1003 -2.6289 15 1 5.7401 -2.4781 -4.6470 16 1 6.8525 -2.3541 -2.4958 17 6 2.1389 -1.1672 0.0005 18 8 3.3559 -1.1672 0.0048 19 6 1.4056 -2.4373 -0.0042 20 6 1.9371 -3.6973 -0.1763 21 7 0.9411 -4.5757 -0.1087 22 6 -0.1972 -3.9444 0.0979 23 6 -1.5228 -4.5852 0.2291 24 6 -2.6589 -3.8059 0.4535 25 6 -3.8939 -4.4097 0.5689 26 6 -4.0062 -5.7856 0.4751 27 6 -2.8833 -6.5643 0.2584 28 6 -1.6431 -5.9727 0.1350 29 7 0.0447 -2.6090 0.1695 30 1 -0.6119 -1.9100 0.3154 31 1 -0.3633 -0.1120 1.0216 32 1 -0.3633 0.9408 -0.4137 33 1 -0.3633 -0.8286 -0.6078 34 1 1.6717 1.9919 0.6234 35 1 3.2006 1.1091 0.3958 36 1 2.5633 3.9782 -1.7512 37 1 3.8740 3.2022 -0.7600 38 1 3.1809 2.6891 -3.7433 39 1 4.8054 2.5632 -2.9381 40 1 6.5702 0.3951 -3.8745 41 1 2.9792 -3.9302 -0.3373 42 1 -2.5719 -2.7323 0.5322 43 1 -4.7744 -3.8075 0.7377 44 1 -4.9747 -6.2537 0.5709 45 1 -2.9778 -7.6377 0.1857 46 1 -0.7673 -6.5816 -0.0337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085848621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = 140.555251 kcal Electronic energy + Delta-G solvation = -29635.197093 eV Core-core repulsion = 25722.098344 eV Total energy + Delta-G solvation = -3913.098749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.14744 -39.44601 -38.98765 -37.50256 -35.35013 -32.88459 -32.32914 -31.95107 -31.17957 -29.16935 -28.20629 -27.71691 -26.52516 -23.93341 -23.19599 -23.17476 -22.64583 -21.40971 -20.83125 -19.85256 -18.98959 -17.82660 -16.96949 -16.78694 -16.19526 -15.85381 -15.62070 -15.33943 -14.91800 -14.78308 -14.60937 -14.01649 -13.80689 -13.75528 -13.55395 -13.42362 -13.38498 -13.05222 -12.78508 -12.73845 -12.17447 -11.71575 -11.56652 -11.42241 -11.38968 -11.01011 -10.79262 -10.59354 -10.41882 -10.23977 -10.17908 -9.90394 -9.71272 -9.58575 -9.50543 -9.29617 -9.28319 -8.53649 -8.22935 -7.97453 -6.62054 -5.55260 -2.89168 0.54048 1.07299 1.70139 2.73119 2.90893 3.24472 3.55426 3.61330 3.63813 3.65696 3.74188 4.05562 4.46942 4.60237 4.61376 4.67834 4.81334 4.81662 4.99881 5.08245 5.12881 5.21111 5.28947 5.35452 5.46380 5.53412 5.57662 5.68246 5.70190 5.79485 5.85680 5.92462 5.98912 6.08577 6.17263 6.18197 6.34247 6.42404 6.59343 6.65454 6.71267 6.73233 6.87506 7.11482 7.34464 7.55423 7.67179 7.80093 7.91895 8.23121 8.61555 9.25672 9.93810 10.78476 11.59846 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.003345 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.148877 B = 8367.785606 C = 9700.217713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.611 5.611 3 C 0.119 3.881 4 C 0.122 3.878 5 H 0.040 0.960 6 C -0.154 4.154 7 C 0.141 3.859 8 N -0.594 5.594 9 C -0.189 4.189 10 H 0.081 0.919 11 C -0.007 4.007 12 N -0.924 5.924 13 Si 0.905 3.095 14 H -0.276 1.276 15 H -0.298 1.298 16 H -0.291 1.291 17 C 0.576 3.424 18 O -0.465 6.465 19 C -0.056 4.056 20 C 0.064 3.936 21 N -0.476 5.476 22 C 0.248 3.752 23 C -0.010 4.010 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.118 4.118 28 C -0.077 4.077 29 N -0.554 5.554 30 H 0.424 0.576 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.017 0.983 39 H 0.086 0.914 40 H 0.248 0.752 41 H 0.187 0.813 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.242 -5.080 10.432 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.346 5.346 3 C -0.004 4.004 4 C 0.013 3.987 5 H 0.057 0.943 6 C -0.193 4.193 7 C 0.015 3.985 8 N -0.319 5.319 9 C -0.317 4.317 10 H 0.098 0.902 11 C -0.203 4.203 12 N -0.572 5.572 13 Si 0.736 3.264 14 H -0.201 1.201 15 H -0.225 1.225 16 H -0.218 1.218 17 C 0.362 3.638 18 O -0.335 6.335 19 C -0.173 4.173 20 C -0.090 4.090 21 N -0.194 5.194 22 C -0.011 4.011 23 C -0.012 4.012 24 C -0.133 4.133 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.136 4.136 28 C -0.096 4.096 29 N -0.167 5.167 30 H 0.271 0.729 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.204 0.796 42 H 0.135 0.865 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.179 -6.140 10.265 23.457 hybrid contribution -0.260 0.341 -0.255 0.499 sum -20.439 -5.799 10.010 23.486 Atomic orbital electron populations 1.22033 0.82072 1.03661 1.00308 1.47517 1.05358 1.06681 1.75012 1.21953 0.97867 0.82406 0.98156 1.22687 0.93401 0.91598 0.90994 0.94302 1.23737 0.99169 0.95078 1.01298 1.22427 1.00995 0.83848 0.91182 1.45914 1.36989 1.03482 1.45549 1.19124 0.99823 0.81282 1.31488 0.90177 1.24778 0.96389 0.97077 1.02027 1.69812 1.13145 1.29147 1.45081 0.86117 0.78837 0.84879 0.76549 1.20099 1.22533 1.21785 1.16684 0.86948 0.81227 0.78902 1.91023 1.11409 1.85441 1.45668 1.21862 0.82341 0.97817 1.15258 1.22907 0.99320 0.86373 1.00428 1.70212 0.97136 1.33082 1.19018 1.21336 0.94420 0.80243 1.05107 1.17649 0.87644 0.93516 1.02415 1.21053 0.92236 0.99182 1.00814 1.20999 0.96953 0.95054 1.00414 1.21295 0.98838 0.93894 0.99238 1.21165 0.92210 1.00302 0.99891 1.21276 0.98398 0.93129 0.96831 1.44484 1.08609 1.08886 1.54748 0.72901 0.92947 0.89648 0.91902 0.91636 0.88544 0.93401 0.90616 0.96487 0.89589 0.94182 0.79616 0.86521 0.85510 0.85743 0.85346 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 8.92 59.85 0.53 1.23 16 2 N -0.61 -10.03 2.88 -183.13 -0.53 -10.56 16 3 C 0.12 2.06 5.33 -4.04 -0.02 2.04 16 4 C 0.12 2.40 4.53 -66.87 -0.30 2.09 16 5 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -2.88 7.86 -25.81 -0.20 -3.09 16 7 C 0.14 3.36 7.92 -2.98 -0.02 3.34 16 8 N -0.59 -15.28 3.54 -170.77 -0.61 -15.88 16 9 C -0.19 -5.46 8.56 -15.06 -0.13 -5.59 16 10 H 0.08 2.31 4.83 -52.49 -0.25 2.06 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.63 11.27 55.49 0.63 -28.01 16 13 Si 0.90 24.25 29.55 -169.99 -5.02 19.23 16 14 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 15 H -0.30 -7.95 7.11 56.52 0.40 -7.54 16 16 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 17 C 0.58 11.29 5.92 -12.86 -0.08 11.22 16 18 O -0.47 -11.20 13.47 5.19 0.07 -11.13 16 19 C -0.06 -0.97 6.69 -81.71 -0.55 -1.51 16 20 C 0.06 1.17 11.70 -17.21 -0.20 0.97 16 21 N -0.48 -7.96 10.79 -10.76 -0.12 -8.08 16 22 C 0.25 3.51 7.74 -154.90 -1.20 2.31 16 23 C -0.01 -0.12 5.87 -104.97 -0.62 -0.73 16 24 C -0.11 -0.99 9.69 -39.18 -0.38 -1.37 16 25 C -0.12 -0.85 10.03 -39.64 -0.40 -1.24 16 26 C -0.11 -0.81 10.04 -39.49 -0.40 -1.21 16 27 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 28 C -0.08 -0.80 9.69 -39.18 -0.38 -1.18 16 29 N -0.55 -7.39 5.05 -7.13 -0.04 -7.43 16 30 H 0.42 4.22 4.16 -40.82 -0.17 4.05 16 31 H 0.05 0.43 7.79 -51.93 -0.40 0.02 16 32 H 0.08 0.80 8.03 -51.92 -0.42 0.38 16 33 H 0.06 0.68 5.13 -51.93 -0.27 0.41 16 34 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 35 H 0.10 1.99 7.21 -51.93 -0.37 1.61 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.32 6.63 -51.93 -0.34 1.97 16 40 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.19 3.41 8.06 -52.49 -0.42 2.99 16 42 H 0.12 0.78 7.14 -52.49 -0.37 0.40 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.14 1.51 7.82 -52.49 -0.41 1.10 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -36.74 373.83 -10.76 -47.51 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.95 Total: 3.10 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -4.83 Total: 5.61 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -0.66 Total: -69.96 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.02 Total: 19.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.74 -10.76 -47.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085848621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.064 kcal (2) G-P(sol) polarization free energy of solvation -36.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds