Wall clock time and date at job start Sat Apr 11 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48503 * 109.47036 * 270.00060 * 3 2 1 5 5 H 1.48508 * 109.47116 * 29.99515 * 3 2 1 6 6 H 1.48495 * 109.47366 * 149.99985 * 3 2 1 7 7 C 1.37880 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99801 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00005 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47290 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.34771 * 119.99613 * 180.02562 * 11 10 9 13 13 O 1.21351 * 120.00558 * 359.97438 * 12 11 10 14 14 C 1.49452 * 120.00011 * 179.97438 * 12 11 10 15 15 O 1.21354 * 119.99880 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00406 * 179.97438 * 14 12 11 17 17 C 1.46494 * 120.00100 * 180.02562 * 16 14 12 18 18 C 1.53008 * 109.47192 * 180.02562 * 17 16 14 19 19 C 1.50692 * 109.47286 * 179.97438 * 18 17 16 20 20 O 1.20827 * 120.00309 * 0.02562 * 19 18 17 21 21 O 1.34232 * 120.00115 * 180.02562 * 19 18 17 22 22 C 1.45200 * 117.00067 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.46978 * 89.99944 * 22 21 19 24 24 C 1.52999 * 109.47317 * 179.97438 * 23 22 21 25 25 C 1.53005 * 109.47159 * 300.00546 * 24 23 22 26 26 C 1.52997 * 109.47452 * 59.99536 * 25 24 23 27 27 C 1.53000 * 109.47046 * 209.99733 * 22 21 19 28 28 H 0.96998 * 120.00059 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46952 * 59.99698 * 9 7 2 30 30 H 1.09003 * 109.46970 * 300.00717 * 9 7 2 31 31 H 1.08995 * 109.47484 * 59.99657 * 10 9 7 32 32 H 1.09000 * 109.46925 * 299.99690 * 10 9 7 33 33 H 0.96998 * 120.00027 * 359.97438 * 11 10 9 34 34 H 0.97005 * 119.99557 * 0.02562 * 16 14 12 35 35 H 1.08997 * 109.47510 * 60.00759 * 17 16 14 36 36 H 1.09000 * 109.47543 * 300.00135 * 17 16 14 37 37 H 1.09008 * 109.46949 * 59.99632 * 18 17 16 38 38 H 1.09000 * 109.46759 * 300.00336 * 18 17 16 39 39 H 1.09002 * 109.47097 * 330.00009 * 22 21 19 40 40 H 1.08996 * 109.47853 * 300.00072 * 23 22 21 41 41 H 1.09002 * 109.47153 * 60.00100 * 23 22 21 42 42 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 44 44 H 1.09002 * 109.46935 * 299.99411 * 25 24 23 45 45 H 1.09001 * 109.46812 * 179.97438 * 25 24 23 46 46 H 1.08993 * 109.47194 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46695 * 59.99734 * 26 25 24 48 48 H 1.08992 * 109.47399 * 300.00084 * 27 22 21 49 49 H 1.09004 * 109.46724 * 60.00570 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4866 -2.6365 0.0022 12 6 6.1604 -3.8037 0.0018 13 8 5.5537 -4.8547 0.0009 14 6 7.6549 -3.8038 0.0024 15 8 8.2617 -2.7528 0.0037 16 7 8.3288 -4.9709 0.0025 17 6 9.7938 -4.9709 0.0037 18 6 10.3038 -6.4135 0.0029 19 6 11.8107 -6.4135 0.0035 20 8 12.4149 -5.3671 0.0049 21 8 12.4819 -7.5760 0.0025 22 6 13.9319 -7.5000 0.0037 23 6 14.4401 -7.4752 1.4466 24 6 15.9680 -7.3957 1.4480 25 6 16.5428 -8.6159 0.7256 26 6 16.0347 -8.6407 -0.7173 27 6 14.5072 -8.7199 -0.7187 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8888 31 1 3.6586 -3.1503 -0.8892 32 1 3.6579 -3.1506 0.8908 33 1 5.9716 -1.7965 0.0025 34 1 7.8438 -5.8110 0.0018 35 1 10.1564 -4.4576 0.8942 36 1 10.1579 -4.4567 -0.8858 37 1 9.9411 -6.9266 -0.8878 38 1 9.9397 -6.9280 0.8922 39 1 14.2486 -6.5915 -0.5087 40 1 14.0303 -6.6062 1.9614 41 1 14.1234 -8.3837 1.9590 42 1 16.3301 -7.3786 2.4760 43 1 16.2850 -6.4875 0.9355 44 1 16.2258 -9.5242 1.2381 45 1 17.6313 -8.5591 0.7263 46 1 16.4445 -9.5097 -1.2319 47 1 16.3517 -7.7324 -1.2297 48 1 14.1905 -9.6283 -0.2064 49 1 14.1451 -8.7374 -1.7467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117618561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:13 Heat of formation + Delta-G solvation = -188.704053 kcal Electronic energy + Delta-G solvation = -28108.403748 eV Core-core repulsion = 23841.425573 eV Total energy + Delta-G solvation = -4266.978175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.22581 -40.49697 -38.83875 -38.37692 -36.63324 -35.85421 -35.02074 -32.83328 -31.81906 -31.42954 -30.45921 -30.28629 -26.53436 -25.08369 -23.46735 -23.20743 -22.53293 -21.18070 -20.90093 -20.53467 -20.23733 -18.35687 -18.24639 -17.21148 -17.00094 -16.97346 -16.44617 -16.01868 -15.64284 -15.24039 -15.13339 -14.84892 -14.69107 -14.62008 -14.19343 -14.14462 -13.90296 -13.61947 -13.35376 -13.26087 -13.02792 -12.85314 -12.61973 -12.49595 -12.08016 -11.90365 -11.74910 -11.64667 -11.52994 -11.51291 -11.36466 -11.25486 -11.02421 -10.86865 -10.49917 -10.45056 -10.31790 -9.96451 -9.50786 -9.50255 -9.32888 -8.79600 -8.61816 -6.12897 -4.13711 1.50031 1.71971 1.90890 2.57007 3.26569 3.31839 3.34694 3.36619 3.73212 4.02970 4.04700 4.05921 4.18262 4.37529 4.38235 4.43997 4.54769 4.56177 4.62895 4.75838 4.80734 4.85333 4.86536 4.98501 5.20369 5.21385 5.30492 5.33951 5.41033 5.45701 5.47942 5.50364 5.59021 5.64796 5.75308 5.92721 5.95348 6.04772 6.09093 6.45483 6.49032 6.86946 7.06801 7.17677 7.26333 7.51600 7.61824 7.80436 8.17619 8.41065 8.90298 9.47144 10.99858 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039507 B = 0.001365 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.567455 B =20500.917713 C =20919.733953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.690 5.690 12 C 0.500 3.500 13 O -0.529 6.529 14 C 0.510 3.490 15 O -0.516 6.516 16 N -0.708 5.708 17 C 0.129 3.871 18 C -0.129 4.129 19 C 0.468 3.532 20 O -0.501 6.501 21 O -0.352 6.352 22 C 0.089 3.911 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.265 0.735 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.414 0.586 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.117 -19.994 0.442 39.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.341 5.341 12 C 0.279 3.721 13 O -0.406 6.406 14 C 0.291 3.709 15 O -0.390 6.390 16 N -0.363 5.363 17 C 0.005 3.995 18 C -0.167 4.167 19 C 0.310 3.690 20 O -0.388 6.388 21 O -0.269 6.269 22 C 0.035 3.965 23 C -0.174 4.174 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.155 4.155 27 C -0.154 4.154 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.251 0.749 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 34.154 -19.536 0.446 39.349 hybrid contribution 0.400 0.974 0.006 1.053 sum 34.555 -18.562 0.451 39.227 Atomic orbital electron populations 1.69899 1.06296 1.27134 1.50221 1.24977 0.94753 0.99152 0.94220 0.86773 0.80345 0.83495 0.78629 1.20153 1.21214 1.18954 1.20876 0.88430 0.94965 1.52037 0.90526 1.19829 0.98113 0.90971 0.97269 1.21726 0.74634 1.00876 1.02216 1.46214 1.09564 1.08025 1.70284 1.19892 0.87510 0.85290 0.79380 1.90748 1.69612 1.30969 1.49309 1.20425 0.89062 0.84078 0.77362 1.90781 1.70030 1.31000 1.47227 1.45623 1.06817 1.09417 1.74413 1.21137 0.78995 0.94533 1.04791 1.21509 0.88463 0.99488 1.07213 1.23303 0.91215 0.82033 0.72438 1.90720 1.70408 1.32793 1.44867 1.86538 1.22379 1.34349 1.83674 1.22834 0.75626 1.00571 0.97496 1.21950 0.96579 1.03207 0.95650 1.21493 0.93991 0.98735 1.01215 1.21611 1.00464 0.98532 0.95576 1.21508 0.93972 1.02724 0.97256 1.21612 0.95572 0.97263 1.00905 0.92495 0.95692 0.96135 0.91199 0.91186 0.75516 0.74941 0.89827 0.89827 0.86504 0.86503 0.89544 0.91229 0.90791 0.91156 0.91536 0.91586 0.91491 0.90892 0.91555 0.90579 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.55 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.50 5.61 -4.04 -0.02 2.48 16 11 N -0.69 -11.66 5.55 -60.73 -0.34 -12.00 16 12 C 0.50 8.00 7.89 -11.59 -0.09 7.90 16 13 O -0.53 -9.34 16.48 5.50 0.09 -9.25 16 14 C 0.51 7.09 7.89 -11.59 -0.09 7.00 16 15 O -0.52 -8.35 16.48 5.49 0.09 -8.26 16 16 N -0.71 -7.11 5.55 -60.73 -0.34 -7.44 16 17 C 0.13 1.13 4.96 -4.04 -0.02 1.11 16 18 C -0.13 -0.72 5.93 -27.88 -0.17 -0.89 16 19 C 0.47 3.83 7.93 36.00 0.29 4.11 16 20 O -0.50 -5.62 15.20 -18.75 -0.29 -5.90 16 21 O -0.35 -2.67 9.88 -39.26 -0.39 -3.06 16 22 C 0.09 0.59 2.45 -26.73 -0.07 0.53 16 23 C -0.14 -0.81 5.56 -26.73 -0.15 -0.96 16 24 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 25 C -0.12 -0.46 5.92 -26.73 -0.16 -0.62 16 26 C -0.12 -0.44 5.92 -26.76 -0.16 -0.60 16 27 C -0.12 -0.56 5.58 -26.75 -0.15 -0.71 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 30 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.41 6.45 7.94 -40.82 -0.32 6.13 16 34 H 0.41 3.40 7.94 -40.82 -0.32 3.08 16 35 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.12 0.44 8.14 -51.92 -0.42 0.01 16 38 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.68 7.16 -51.93 -0.37 0.31 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 406.48 15.07 6.13 6.13 Total: -1.00 -33.76 406.48 -8.56 -42.32 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.13 Total: 2.25 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.49 Total: 5.09 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.10 Total: -45.77 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.49 Total: -26.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.76 -8.56 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117618561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.385 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds