Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48493 * 109.47300 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46720 * 299.99550 * 3 2 1 6 6 H 1.48498 * 109.47073 * 59.99178 * 3 2 1 7 7 C 1.37878 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99753 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.91593 * 303.89713 * 9 7 2 11 11 C 1.55163 * 110.99988 * 179.97438 * 9 7 2 12 12 C 1.54323 * 102.93929 * 206.42368 * 11 9 7 13 13 N 1.47027 * 107.27098 * 22.19002 * 12 11 9 14 14 C 1.34777 * 125.64614 * 181.01898 * 13 12 11 15 15 O 1.21343 * 120.00084 * 180.02562 * 14 13 12 16 16 C 1.49454 * 120.00164 * 0.03357 * 14 13 12 17 17 O 1.21353 * 119.99759 * 359.97438 * 16 14 13 18 18 N 1.34773 * 120.00135 * 180.27489 * 16 14 13 19 19 C 1.46500 * 120.00432 * 179.72278 * 18 16 14 20 20 H 1.08999 * 110.01385 * 33.60520 * 19 18 16 21 21 C 1.54259 * 110.03132 * 272.16538 * 19 18 16 22 22 C 1.54891 * 104.19663 * 217.10104 * 21 19 18 23 23 C 1.54890 * 102.74482 * 37.94056 * 22 21 19 24 24 C 1.53871 * 110.03259 * 154.99328 * 19 18 16 25 25 H 1.09002 * 110.03311 * 238.61383 * 24 19 18 26 26 C 1.52995 * 110.03769 * 0.02562 * 24 19 18 27 27 C 1.52992 * 109.47577 * 184.99641 * 26 24 19 28 28 O 1.42896 * 109.47632 * 180.02562 * 27 26 24 29 29 C 1.47415 * 108.70443 * 1.28922 * 13 12 11 30 30 H 0.97000 * 119.99736 * 0.02562 * 1 2 3 31 31 H 0.96700 * 114.00008 * 56.09658 * 10 9 7 32 32 H 1.09002 * 110.71815 * 88.06002 * 11 9 7 33 33 H 1.08997 * 110.72005 * 324.78214 * 11 9 7 34 34 H 1.09004 * 109.88073 * 262.77569 * 12 11 9 35 35 H 1.08994 * 109.88450 * 141.60942 * 12 11 9 36 36 H 0.97001 * 120.00114 * 359.71542 * 18 16 14 37 37 H 1.08995 * 110.48920 * 335.77993 * 21 19 18 38 38 H 1.09003 * 110.48463 * 98.42401 * 21 19 18 39 39 H 1.09001 * 110.75356 * 279.62901 * 22 21 19 40 40 H 1.08997 * 110.91369 * 156.33053 * 22 21 19 41 41 H 1.08998 * 110.48641 * 203.37433 * 23 22 21 42 42 H 1.08999 * 110.48415 * 80.74110 * 23 22 21 43 43 H 1.09002 * 109.47086 * 305.00079 * 26 24 19 44 44 H 1.09002 * 109.47048 * 64.99267 * 26 24 19 45 45 H 1.09002 * 109.47270 * 300.00325 * 27 26 24 46 46 H 1.09002 * 109.47237 * 59.99741 * 27 26 24 47 47 H 0.96701 * 114.00742 * 180.02562 * 28 27 26 48 48 H 1.09000 * 110.36943 * 94.47559 * 29 13 12 49 49 H 1.08999 * 110.37057 * 216.80436 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.3508 -2.5685 1.1081 11 6 2.2275 -3.7050 0.0005 12 6 1.3981 -4.8212 -0.6688 13 7 0.3471 -4.1678 -1.4625 14 6 -0.5992 -4.7999 -2.1846 15 8 -1.4203 -4.1563 -2.8044 16 6 -0.6374 -6.2935 -2.2220 17 8 0.1839 -6.9371 -1.6024 18 7 -1.5803 -6.9255 -2.9486 19 6 -1.6141 -8.3895 -2.9901 20 1 -1.2889 -8.7975 -2.0331 21 6 -0.7040 -8.9071 -4.1230 22 6 -1.4653 -10.1295 -4.6934 23 6 -2.9434 -9.6707 -4.6317 24 6 -3.0379 -8.8749 -3.3135 25 1 -3.4037 -9.5186 -2.5135 26 6 -3.9726 -7.6767 -3.4911 27 6 -5.4063 -8.1730 -3.6883 28 8 -6.2792 -7.0539 -3.8547 29 6 0.5036 -2.7069 -1.3428 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2787 -1.8356 1.1498 32 1 2.4970 -3.9830 1.0195 33 1 3.1174 -3.4806 -0.5874 34 1 0.9464 -5.4554 0.0940 35 1 2.0370 -5.4182 -1.3195 36 1 -2.2366 -6.4110 -3.4440 37 1 -0.5787 -8.1436 -4.8907 38 1 0.2640 -9.2121 -3.7254 39 1 -1.3074 -11.0087 -4.0687 40 1 -1.1653 -10.3294 -5.7220 41 1 -3.6097 -10.5329 -4.6056 42 1 -3.1798 -9.0305 -5.4816 43 1 -3.9256 -7.0447 -2.6043 44 1 -3.6639 -7.1014 -4.3640 45 1 -5.4533 -8.8050 -4.5751 46 1 -5.7149 -8.7483 -2.8154 47 1 -7.2068 -7.2944 -3.9845 48 1 1.0950 -2.3195 -2.1724 49 1 -0.4721 -2.2220 -1.3124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326109621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = -172.020323 kcal Electronic energy + Delta-G solvation = -30861.306248 eV Core-core repulsion = 26595.051533 eV Total energy + Delta-G solvation = -4266.254714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65009 -39.35808 -37.99549 -37.14254 -36.90434 -34.46250 -33.56830 -32.39152 -32.16002 -30.20180 -28.31469 -27.83896 -27.16488 -25.70699 -23.73765 -23.11634 -21.96068 -21.01349 -19.82300 -19.46809 -19.41769 -17.73443 -17.31901 -17.17593 -16.55912 -15.94192 -15.72806 -15.61126 -15.35621 -15.09119 -14.69105 -14.52099 -14.36079 -13.94720 -13.72535 -13.52839 -13.05249 -12.98061 -12.77899 -12.41753 -12.30418 -12.25085 -11.94333 -11.62288 -11.51627 -11.37522 -11.14313 -11.08959 -11.07516 -11.06719 -10.98370 -10.85390 -10.75019 -10.53835 -10.46027 -10.23321 -10.18557 -9.40051 -9.16741 -9.09728 -8.69048 -8.40713 -7.86311 -6.30737 -4.40071 1.83729 2.68968 3.19318 3.28243 3.31806 3.63345 3.76677 3.98553 4.16671 4.25035 4.25717 4.61002 4.74146 4.78650 4.85656 4.97058 5.04946 5.10213 5.14954 5.20228 5.23451 5.32699 5.40795 5.51497 5.54707 5.65602 5.72733 5.82095 5.85185 5.88375 5.90612 5.96890 6.03333 6.07694 6.29241 6.42411 6.52749 6.74453 6.81009 6.85731 7.18521 7.28529 7.32922 7.35178 7.72970 7.90632 7.99551 8.08892 8.48446 8.64137 9.29861 9.45737 10.76625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.002609 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.441506 B =10729.992219 C =11714.485405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.573 5.573 14 C 0.506 3.494 15 O -0.538 6.538 16 C 0.510 3.490 17 O -0.517 6.517 18 N -0.705 5.705 19 C 0.145 3.855 20 H 0.096 0.904 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.096 4.096 25 H 0.086 0.914 26 C -0.124 4.124 27 C 0.079 3.921 28 O -0.573 6.573 29 C 0.090 3.910 30 H 0.271 0.729 31 H 0.386 0.614 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.379 0.621 48 H 0.067 0.933 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -19.671 -8.858 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.160 4.160 12 C -0.010 4.010 13 N -0.305 5.305 14 C 0.288 3.712 15 O -0.417 6.417 16 C 0.291 3.709 17 O -0.392 6.392 18 N -0.362 5.362 19 C 0.040 3.960 20 H 0.114 0.886 21 C -0.175 4.175 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.115 4.115 25 H 0.104 0.896 26 C -0.162 4.162 27 C 0.001 3.999 28 O -0.378 6.378 29 C -0.031 4.031 30 H 0.081 0.919 31 H 0.238 0.762 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.253 0.747 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.085 0.915 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.578 -19.906 -8.561 22.645 hybrid contribution -0.760 1.301 -0.470 1.579 sum -7.338 -18.605 -9.031 21.944 Atomic orbital electron populations 1.69573 1.06040 1.27947 1.49902 1.25103 0.95059 0.99870 0.93299 0.86314 0.80037 0.82578 0.77775 1.19544 1.20756 1.20725 1.21544 0.93806 0.89950 1.52104 0.91271 1.19644 0.85759 0.91931 0.81840 1.86085 1.50997 1.52950 1.49222 1.22726 0.97906 0.94889 1.00503 1.22133 0.89014 0.95481 0.94391 1.48624 1.27763 1.10030 1.44087 1.19613 0.82423 0.87623 0.81541 1.90727 1.39073 1.67357 1.44540 1.20454 0.81627 0.89235 0.79550 1.90714 1.38081 1.67800 1.42638 1.46162 1.32980 1.07108 1.49911 1.21685 0.94612 0.79335 1.00336 0.88573 1.22815 0.98995 0.97830 0.97812 1.22453 0.94742 0.97695 1.01198 1.22508 0.97037 0.99495 0.96846 1.21989 0.93920 0.96713 0.98875 0.89580 1.21643 0.92814 0.98066 1.03696 1.22156 0.90310 0.88107 0.99318 1.86534 1.21560 1.33818 1.95865 1.23549 1.02960 0.75511 1.01106 0.91883 0.76192 0.90512 0.90441 0.91187 0.91810 0.74671 0.90897 0.90737 0.91174 0.91195 0.91293 0.91046 0.90167 0.90614 0.93585 0.93716 0.77475 0.91457 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.73 10.72 55.43 0.59 -23.14 16 2 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 3 Si 0.91 20.24 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -13.88 8.25 -34.44 -0.28 -14.16 16 8 H 0.07 1.75 7.76 -52.49 -0.41 1.35 16 9 C 0.25 6.10 0.89 -89.50 -0.08 6.02 16 10 O -0.58 -15.16 13.19 -35.23 -0.46 -15.63 16 11 C -0.12 -2.53 6.13 -24.89 -0.15 -2.68 16 12 C 0.11 2.21 5.49 -3.06 -0.02 2.20 16 13 N -0.57 -12.40 3.32 -170.89 -0.57 -12.97 16 14 C 0.51 10.44 7.91 -11.58 -0.09 10.35 16 15 O -0.54 -12.11 16.73 5.50 0.09 -12.02 16 16 C 0.51 8.81 7.85 -11.59 -0.09 8.72 16 17 O -0.52 -9.45 13.78 5.49 0.08 -9.37 16 18 N -0.71 -9.51 4.38 -53.16 -0.23 -9.74 16 19 C 0.15 1.52 3.23 -66.82 -0.22 1.31 16 20 H 0.10 1.11 7.56 -51.93 -0.39 0.72 16 21 C -0.14 -1.28 6.53 -25.08 -0.16 -1.44 16 22 C -0.12 -0.84 6.91 -24.74 -0.17 -1.01 16 23 C -0.12 -0.78 5.53 -25.07 -0.14 -0.91 16 24 C -0.10 -0.76 2.93 -89.51 -0.26 -1.02 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 C -0.12 -1.16 3.58 -26.74 -0.10 -1.25 16 27 C 0.08 0.62 6.90 37.15 0.26 0.88 16 28 O -0.57 -5.51 13.66 -35.23 -0.48 -5.99 16 29 C 0.09 2.16 5.64 -2.42 -0.01 2.15 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 31 H 0.39 10.33 6.93 45.56 0.32 10.65 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.49 8.01 -51.93 -0.42 1.07 16 34 H 0.07 1.40 7.58 -51.93 -0.39 1.00 16 35 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 36 H 0.41 5.48 5.37 -40.82 -0.22 5.26 16 37 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.47 7.76 -51.93 -0.40 0.07 16 43 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 44 H 0.08 0.75 7.10 -51.93 -0.37 0.38 16 45 H 0.05 0.29 7.51 -51.93 -0.39 -0.10 16 46 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.38 1.81 9.12 45.56 0.42 2.22 16 48 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 49 H 0.09 2.30 7.64 -51.93 -0.40 1.91 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -30.86 388.57 -8.14 -39.00 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -6.37 Total: 17.94 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.61 Total: 10.84 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.21 Total: -45.84 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.78 Total: -43.01 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.86 -8.14 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326109621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.024 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds