Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47646 * 2 1 4 4 C 1.53001 * 109.46876 * 239.99874 * 2 1 3 5 5 C 1.52999 * 109.46992 * 120.00322 * 2 1 3 6 6 H 1.08999 * 109.47091 * 179.97438 * 5 2 1 7 7 C 1.53001 * 109.46944 * 299.99510 * 5 2 1 8 8 N 1.46508 * 109.47024 * 175.00215 * 7 5 2 9 9 C 1.36933 * 119.99920 * 179.97438 * 8 7 5 10 10 H 1.08010 * 119.99913 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00299 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99433 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00477 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47227 * 90.00148 * 13 11 9 15 15 H 1.48499 * 109.47651 * 210.00379 * 13 11 9 16 16 H 1.48509 * 109.47152 * 330.00665 * 13 11 9 17 17 N 1.46499 * 109.47341 * 59.99623 * 5 2 1 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 5 2 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 5 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 5 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.38258 * 120.00452 * 99.99964 * 21 20 18 23 23 C 1.38210 * 120.07631 * 180.02562 * 22 21 20 24 24 C 1.38254 * 120.06801 * 359.96663 * 23 22 21 25 25 C 1.38371 * 120.00225 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.03787 * 180.02562 * 25 24 23 27 27 C 1.38373 * 120.00238 * 279.72562 * 21 20 18 28 28 F 1.35104 * 120.03176 * 359.97399 * 27 21 20 29 29 H 1.09001 * 109.46951 * 300.00229 * 1 2 3 30 30 H 1.08995 * 109.46927 * 59.99810 * 1 2 3 31 31 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47585 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46693 * 300.00597 * 3 2 1 34 34 H 1.09007 * 109.46742 * 59.99677 * 3 2 1 35 35 H 1.08996 * 109.46985 * 300.00000 * 4 2 1 36 36 H 1.08995 * 109.47084 * 60.00412 * 4 2 1 37 37 H 1.08999 * 109.46935 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.46944 * 295.00111 * 7 5 2 39 39 H 1.08997 * 109.47436 * 55.00260 * 7 5 2 40 40 H 0.96994 * 120.00145 * 0.02562 * 8 7 5 41 41 H 0.97005 * 119.99444 * 179.97438 * 12 11 9 42 42 H 0.97001 * 119.99790 * 264.99588 * 17 5 2 43 43 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 44 44 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 45 45 H 1.08002 * 119.96211 * 359.97438 * 22 21 20 46 46 H 1.08001 * 119.96848 * 179.97438 * 23 22 21 47 47 H 1.08002 * 120.00205 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7217 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7567 3.6916 9 6 1.5691 -0.3005 4.9348 10 1 1.0080 0.6169 5.0357 11 6 1.9358 -1.0177 6.0653 12 7 2.6190 -2.1359 5.9423 13 14 1.4597 -0.3958 7.7612 14 1 0.1369 -0.9544 8.1399 15 1 2.4802 -0.8256 8.7506 16 1 1.3834 1.0872 7.7412 17 7 1.5516 -2.1025 1.2492 18 6 2.2314 -3.0576 0.5843 19 8 3.2447 -2.7727 -0.0181 20 6 1.7324 -4.4795 0.5895 21 6 2.6648 -5.3421 -0.2214 22 6 3.6116 -6.1240 0.4141 23 6 4.4679 -6.9152 -0.3282 24 6 4.3791 -6.9270 -1.7078 25 6 3.4326 -6.1457 -2.3470 26 9 3.3450 -6.1571 -3.6951 27 6 2.5699 -5.3559 -1.6018 28 9 1.6410 -4.5967 -2.2233 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 1.9647 0.9985 2.5443 39 1 0.4437 0.0783 2.4549 40 1 2.4217 -1.5804 3.6010 41 1 2.8756 -2.6369 6.7323 42 1 0.7412 -2.3303 1.7311 43 1 1.6955 -4.8480 1.6147 44 1 0.7338 -4.5158 0.1542 45 1 3.6826 -6.1159 1.4917 46 1 5.2070 -7.5250 0.1700 47 1 5.0485 -7.5460 -2.2868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486413683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = -100.708866 kcal Electronic energy + Delta-G solvation = -30712.707888 eV Core-core repulsion = 26338.457955 eV Total energy + Delta-G solvation = -4374.249933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.51879 -48.59813 -40.20518 -39.01324 -37.30561 -34.44250 -33.26586 -32.83700 -31.06506 -30.41759 -28.39836 -27.49287 -27.10582 -26.36028 -23.81934 -22.95018 -22.56348 -21.44219 -20.25727 -18.56434 -17.98376 -17.42052 -17.34137 -16.97300 -16.78268 -16.18703 -15.72592 -15.52018 -14.98308 -14.96131 -14.72908 -14.47938 -14.04209 -13.92352 -13.81808 -13.57858 -13.41903 -13.16180 -12.99563 -12.72302 -12.30196 -12.25554 -12.06709 -11.97706 -11.78928 -11.70498 -11.38683 -11.32660 -11.20293 -11.06379 -10.83880 -10.72294 -10.47790 -10.23446 -9.93838 -9.77164 -9.63421 -9.00946 -8.91620 -8.83231 -8.55840 -6.97832 -5.82065 -3.11002 0.82222 0.83699 2.92941 3.14002 3.39383 3.45403 3.46691 3.60651 3.67833 4.22731 4.32525 4.53436 4.56215 4.78878 4.93036 4.96974 4.98742 5.11155 5.21345 5.23212 5.38357 5.50769 5.58423 5.61765 5.68906 5.74717 5.81076 5.83208 5.92617 5.94170 5.96949 6.06812 6.10345 6.12438 6.15202 6.19547 6.33803 6.48087 6.48741 6.52775 6.61722 6.67583 6.75438 6.98481 7.64831 7.86758 8.36362 8.55309 9.48331 10.04527 10.40151 11.40402 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.003387 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.823260 B = 8264.506657 C =10138.094193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.129 4.129 5 C 0.151 3.849 6 H 0.086 0.914 7 C 0.141 3.859 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.706 5.706 18 C 0.519 3.481 19 O -0.536 6.536 20 C -0.109 4.109 21 C -0.064 4.064 22 C -0.088 4.088 23 C -0.100 4.100 24 C -0.130 4.130 25 C 0.063 3.937 26 F -0.132 7.132 27 C 0.084 3.916 28 F -0.126 7.126 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.029 0.971 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.404 0.596 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -7.716 -15.544 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.186 4.186 5 C 0.046 3.954 6 H 0.104 0.896 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.580 5.580 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.357 5.357 18 C 0.304 3.696 19 O -0.413 6.413 20 C -0.149 4.149 21 C -0.066 4.066 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.149 4.149 25 C 0.043 3.957 26 F -0.111 7.111 27 C 0.064 3.936 28 F -0.105 7.105 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.238 0.762 43 H 0.135 0.865 44 H 0.123 0.877 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.590 -7.360 -15.912 17.542 hybrid contribution -0.629 0.084 0.851 1.062 sum -1.220 -7.276 -15.061 16.771 Atomic orbital electron populations 1.21904 0.94725 1.01605 1.01563 1.20899 0.95811 0.95583 0.95496 1.21884 1.01155 0.95054 1.01730 1.21870 1.01520 0.99720 0.95477 1.21257 0.99738 0.80148 0.94290 0.89615 1.21101 0.97392 0.94701 0.85439 1.42350 1.66956 1.27768 1.00496 1.19214 1.28865 1.05479 0.83636 0.91207 1.24722 1.00850 0.97409 0.97780 1.69663 1.43324 1.16553 1.28470 0.86204 0.77548 0.78050 0.84447 1.21745 1.21794 1.20787 1.45881 1.28994 1.08388 1.52406 1.20104 0.84157 0.86382 0.78951 1.90710 1.24710 1.82525 1.43325 1.20673 0.99222 0.92499 1.02469 1.19288 0.98440 0.98176 0.90679 1.21107 0.93454 0.94836 1.01192 1.21043 0.99088 0.99018 0.92647 1.21054 0.98337 0.99903 0.95615 1.17627 0.99338 1.01427 0.77309 1.91513 1.95667 1.95507 1.28406 1.17449 0.90912 0.94739 0.90515 1.91511 1.62823 1.73566 1.82589 0.91944 0.93253 0.92896 0.92617 0.92944 0.91923 0.92823 0.94102 0.92146 0.94768 0.95354 0.78085 0.93540 0.76169 0.86530 0.87698 0.83925 0.84172 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.97 37.16 0.30 -1.48 16 2 C -0.08 -1.06 0.62 -154.51 -0.10 -1.16 16 3 C -0.14 -1.83 8.12 37.16 0.30 -1.53 16 4 C -0.13 -1.89 7.00 37.16 0.26 -1.63 16 5 C 0.15 2.47 1.69 -67.93 -0.11 2.35 16 6 H 0.09 1.63 7.57 -51.93 -0.39 1.24 16 7 C 0.14 2.66 5.10 -4.04 -0.02 2.64 16 8 N -0.73 -17.45 5.43 -59.90 -0.33 -17.77 16 9 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 10 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 13 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 N -0.71 -10.71 3.64 -53.81 -0.20 -10.91 16 18 C 0.52 7.96 6.18 -10.99 -0.07 7.89 16 19 O -0.54 -9.80 13.09 5.55 0.07 -9.72 16 20 C -0.11 -1.30 5.56 -29.04 -0.16 -1.47 16 21 C -0.06 -0.80 4.42 -104.57 -0.46 -1.26 16 22 C -0.09 -0.94 9.67 -39.58 -0.38 -1.32 16 23 C -0.10 -0.91 10.04 -39.59 -0.40 -1.31 16 24 C -0.13 -1.27 10.02 -39.53 -0.40 -1.67 16 25 C 0.06 0.79 7.31 -39.37 -0.29 0.50 16 26 F -0.13 -1.75 17.18 2.25 0.04 -1.71 16 27 C 0.08 1.14 7.14 -39.36 -0.28 0.86 16 28 F -0.13 -1.86 16.57 2.25 0.04 -1.82 16 29 H 0.06 0.80 6.32 -51.93 -0.33 0.47 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.66 7.60 -51.93 -0.39 0.26 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.82 6.54 -51.92 -0.34 0.48 16 35 H 0.05 0.84 5.79 -51.93 -0.30 0.54 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 38 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 39 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 40 H 0.39 9.78 7.33 -40.82 -0.30 9.48 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.40 5.77 8.60 -40.82 -0.35 5.42 16 43 H 0.12 1.22 8.00 -51.93 -0.42 0.81 16 44 H 0.10 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.14 1.33 8.04 -52.49 -0.42 0.91 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -31.61 385.17 -7.72 -39.34 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.80 Total: 12.01 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.06 Total: -5.60 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.20 Total: -55.04 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.61 -7.72 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486413683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.373 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds