Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47646 * 2 1 4 4 C 1.53001 * 109.46876 * 239.99874 * 2 1 3 5 5 C 1.52999 * 109.46992 * 120.00322 * 2 1 3 6 6 H 1.08999 * 109.47091 * 179.97438 * 5 2 1 7 7 C 1.53001 * 109.46944 * 299.99510 * 5 2 1 8 8 N 1.46508 * 109.47024 * 175.00215 * 7 5 2 9 9 C 1.36933 * 119.99920 * 179.97438 * 8 7 5 10 10 H 1.08010 * 119.99913 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00299 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99433 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00477 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47227 * 90.00148 * 13 11 9 15 15 H 1.48499 * 109.47651 * 210.00379 * 13 11 9 16 16 H 1.48509 * 109.47152 * 330.00665 * 13 11 9 17 17 N 1.46499 * 109.47341 * 59.99623 * 5 2 1 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 5 2 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 5 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 5 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.38258 * 120.00452 * 99.99964 * 21 20 18 23 23 C 1.38210 * 120.07631 * 180.02562 * 22 21 20 24 24 C 1.38254 * 120.06801 * 359.96663 * 23 22 21 25 25 C 1.38371 * 120.00225 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.03787 * 180.02562 * 25 24 23 27 27 C 1.38373 * 120.00238 * 279.72562 * 21 20 18 28 28 F 1.35104 * 120.03176 * 359.97399 * 27 21 20 29 29 H 1.09001 * 109.46951 * 300.00229 * 1 2 3 30 30 H 1.08995 * 109.46927 * 59.99810 * 1 2 3 31 31 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47585 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46693 * 300.00597 * 3 2 1 34 34 H 1.09007 * 109.46742 * 59.99677 * 3 2 1 35 35 H 1.08996 * 109.46985 * 300.00000 * 4 2 1 36 36 H 1.08995 * 109.47084 * 60.00412 * 4 2 1 37 37 H 1.08999 * 109.46935 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.46944 * 295.00111 * 7 5 2 39 39 H 1.08997 * 109.47436 * 55.00260 * 7 5 2 40 40 H 0.96994 * 120.00145 * 0.02562 * 8 7 5 41 41 H 0.97005 * 119.99444 * 179.97438 * 12 11 9 42 42 H 0.97001 * 119.99790 * 264.99588 * 17 5 2 43 43 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 44 44 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 45 45 H 1.08002 * 119.96211 * 359.97438 * 22 21 20 46 46 H 1.08001 * 119.96848 * 179.97438 * 23 22 21 47 47 H 1.08002 * 120.00205 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7217 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7567 3.6916 9 6 1.5691 -0.3005 4.9348 10 1 1.0080 0.6169 5.0357 11 6 1.9358 -1.0177 6.0653 12 7 2.6190 -2.1359 5.9423 13 14 1.4597 -0.3958 7.7612 14 1 0.1369 -0.9544 8.1399 15 1 2.4802 -0.8256 8.7506 16 1 1.3834 1.0872 7.7412 17 7 1.5516 -2.1025 1.2492 18 6 2.2314 -3.0576 0.5843 19 8 3.2447 -2.7727 -0.0181 20 6 1.7324 -4.4795 0.5895 21 6 2.6648 -5.3421 -0.2214 22 6 3.6116 -6.1240 0.4141 23 6 4.4679 -6.9152 -0.3282 24 6 4.3791 -6.9270 -1.7078 25 6 3.4326 -6.1457 -2.3470 26 9 3.3450 -6.1571 -3.6951 27 6 2.5699 -5.3559 -1.6018 28 9 1.6410 -4.5967 -2.2233 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 1.9647 0.9985 2.5443 39 1 0.4437 0.0783 2.4549 40 1 2.4217 -1.5804 3.6010 41 1 2.8756 -2.6369 6.7323 42 1 0.7412 -2.3303 1.7311 43 1 1.6955 -4.8480 1.6147 44 1 0.7338 -4.5158 0.1542 45 1 3.6826 -6.1159 1.4917 46 1 5.2070 -7.5250 0.1700 47 1 5.0485 -7.5460 -2.2868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486413683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = -118.865576 kcal Electronic energy + Delta-G solvation = -30713.495222 eV Core-core repulsion = 26338.457955 eV Total energy + Delta-G solvation = -4375.037267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.51000 -49.60126 -41.41523 -39.95087 -38.54122 -36.18201 -34.60681 -33.82722 -32.90591 -31.27317 -29.69923 -28.73592 -28.16061 -27.58997 -25.60280 -23.82682 -23.66366 -22.90256 -21.44198 -19.85743 -19.16957 -18.86259 -18.34898 -18.05829 -17.91976 -17.24251 -17.07217 -16.84427 -16.37355 -16.00545 -15.76116 -15.54043 -15.47327 -15.31555 -14.93773 -14.85745 -14.74693 -14.45474 -14.21500 -14.00220 -13.63756 -13.23620 -13.05781 -13.00856 -12.98690 -12.94562 -12.74966 -12.69396 -12.51774 -12.33855 -12.23000 -12.16477 -12.00874 -11.73405 -11.63666 -11.29602 -10.96422 -10.80978 -9.89414 -9.85127 -9.72897 -8.95745 -7.91578 -5.19975 -0.04560 -0.02702 1.50587 1.51324 1.59368 1.72570 2.17778 2.54059 2.58867 2.79618 3.28499 3.42834 3.46335 3.65621 3.74531 3.81210 3.93944 3.98083 4.08297 4.18554 4.26534 4.32351 4.36383 4.46758 4.51865 4.64532 4.78731 4.80194 4.82858 4.88020 4.92132 4.96132 5.00007 5.05619 5.07836 5.16662 5.17553 5.23692 5.30526 5.30881 5.44901 5.52459 5.55514 5.67864 5.77828 6.29811 6.64269 7.33938 7.37520 8.10682 8.35580 9.31382 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.003387 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.823260 B = 8264.506657 C =10138.094193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.054 0.946 7 C 0.145 3.855 8 N -0.741 5.741 9 C -0.243 4.243 10 H 0.076 0.924 11 C -0.069 4.069 12 N -0.965 5.965 13 Si 0.969 3.031 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.273 1.273 17 N -0.704 5.704 18 C 0.515 3.485 19 O -0.568 6.568 20 C -0.103 4.103 21 C -0.079 4.079 22 C -0.095 4.095 23 C -0.089 4.089 24 C -0.122 4.122 25 C 0.042 3.958 26 F -0.142 7.142 27 C 0.057 3.943 28 F -0.141 7.141 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.409 0.591 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.156 0.844 46 H 0.177 0.823 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -7.889 -15.451 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.384 5.384 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.262 4.262 12 N -0.615 5.615 13 Si 0.798 3.202 14 H -0.213 1.213 15 H -0.226 1.226 16 H -0.198 1.198 17 N -0.354 5.354 18 C 0.302 3.698 19 O -0.448 6.448 20 C -0.142 4.142 21 C -0.080 4.080 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.140 4.140 25 C 0.022 3.978 26 F -0.121 7.121 27 C 0.037 3.963 28 F -0.120 7.120 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.244 0.756 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.174 0.826 46 H 0.194 0.806 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.187 -7.505 -15.839 17.567 hybrid contribution -0.402 0.143 0.772 0.882 sum -1.589 -7.362 -15.067 16.845 Atomic orbital electron populations 1.21864 0.93103 1.01975 1.02400 1.20852 0.96980 0.95714 0.93665 1.21878 1.00645 0.94414 1.02736 1.21746 0.99976 0.99317 0.96529 1.21023 0.97851 0.81076 0.94484 0.92792 1.21200 0.98042 0.94250 0.84617 1.42497 1.66822 1.27791 1.01271 1.19593 1.27792 1.05286 0.84808 0.90613 1.25459 1.01634 0.97921 1.01158 1.69808 1.44979 1.17832 1.28914 0.85213 0.76907 0.77884 0.80153 1.21277 1.22599 1.19803 1.45849 1.29096 1.08047 1.52440 1.20674 0.83561 0.87542 0.78016 1.90692 1.26203 1.83233 1.44659 1.20684 0.99915 0.90080 1.03571 1.19419 0.99322 0.98926 0.90358 1.21425 0.93114 0.94617 1.02101 1.21480 0.98736 0.98143 0.92345 1.21445 0.97450 0.98955 0.96195 1.17974 1.00324 1.02452 0.77052 1.91479 1.95827 1.95671 1.29108 1.17769 0.91610 0.95683 0.91230 1.91457 1.63483 1.74158 1.82912 0.91942 0.91530 0.92809 0.93526 0.90901 0.91911 0.94056 0.92415 0.94395 0.94820 0.93820 0.79291 0.94106 0.75556 0.84956 0.86090 0.82637 0.80587 0.81027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.97 71.98 0.57 -2.60 16 2 C -0.07 -1.92 0.62 -52.18 -0.03 -1.95 16 3 C -0.14 -3.46 8.12 71.98 0.58 -2.87 16 4 C -0.12 -3.46 7.00 71.98 0.50 -2.96 16 5 C 0.16 5.31 1.69 44.99 0.08 5.39 16 6 H 0.05 2.14 7.57 -2.39 -0.02 2.12 16 7 C 0.15 5.40 5.10 86.38 0.44 5.84 16 8 N -0.74 -35.38 5.43 -343.43 -1.87 -37.25 16 9 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 10 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 11 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 12 N -0.96 -56.49 13.06 21.65 0.28 -56.20 16 13 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 N -0.70 -21.46 3.64 -442.54 -1.61 -23.07 16 18 C 0.51 16.04 6.18 87.66 0.54 16.59 16 19 O -0.57 -21.48 13.09 -3.04 -0.04 -21.52 16 20 C -0.10 -2.45 5.56 29.10 0.16 -2.29 16 21 C -0.08 -1.94 4.42 -19.83 -0.09 -2.03 16 22 C -0.09 -1.89 9.67 22.27 0.22 -1.68 16 23 C -0.09 -1.41 10.04 22.27 0.22 -1.18 16 24 C -0.12 -2.16 10.02 22.31 0.22 -1.93 16 25 C 0.04 1.04 7.31 22.41 0.16 1.20 16 26 F -0.14 -3.79 17.18 44.97 0.77 -3.02 16 27 C 0.06 1.57 7.14 22.41 0.16 1.73 16 28 F -0.14 -4.30 16.57 44.97 0.75 -3.56 16 29 H 0.06 1.46 6.32 -2.39 -0.02 1.44 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.24 7.60 -2.39 -0.02 1.22 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.55 6.54 -2.38 -0.02 1.54 16 35 H 0.04 1.30 5.79 -2.39 -0.01 1.29 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.26 7.53 -2.39 -0.02 1.24 16 38 H 0.03 1.28 6.71 -2.39 -0.02 1.27 16 39 H 0.04 1.53 6.17 -2.39 -0.01 1.52 16 40 H 0.37 19.32 7.33 -92.71 -0.68 18.64 16 41 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 42 H 0.41 11.56 8.60 -92.71 -0.80 10.76 16 43 H 0.13 2.68 8.00 -2.39 -0.02 2.66 16 44 H 0.12 2.43 7.93 -2.39 -0.02 2.41 16 45 H 0.16 2.65 8.04 -2.91 -0.02 2.62 16 46 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -68.85 385.17 4.90 -63.95 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.47 Total: 38.25 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.06 Total: -4.12 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.19 Total: -116.52 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.04 Total: -21.52 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.52 Total: -6.58 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.85 4.90 -63.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486413683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.918 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds