Wall clock time and date at job start Sat Apr 11 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.52996 * 109.47276 * 294.99872 * 4 2 1 6 6 H 1.09001 * 109.47166 * 55.00144 * 5 4 2 7 7 C 1.53004 * 109.47021 * 174.99763 * 5 4 2 8 8 N 1.46506 * 109.46993 * 174.99953 * 7 5 4 9 9 C 1.36932 * 120.00065 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00108 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99892 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99813 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00183 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46992 * 90.00195 * 13 11 9 15 15 H 1.48498 * 109.46962 * 210.00540 * 13 11 9 16 16 H 1.48500 * 109.46787 * 330.00230 * 13 11 9 17 17 N 1.46494 * 109.47345 * 295.00054 * 5 4 2 18 18 C 1.34774 * 120.00249 * 84.99769 * 17 5 4 19 19 O 1.21289 * 119.99958 * 0.02562 * 18 17 5 20 20 C 1.50696 * 120.00360 * 180.02562 * 18 17 5 21 21 C 1.50706 * 109.47408 * 179.97438 * 20 18 17 22 22 C 1.38250 * 119.96472 * 269.72566 * 21 20 18 23 23 C 1.38214 * 120.06959 * 179.76496 * 22 21 20 24 24 C 1.38410 * 119.99950 * 0.50688 * 23 22 21 25 25 F 1.35101 * 120.03730 * 179.72219 * 24 23 22 26 26 C 1.38651 * 119.92832 * 359.74631 * 24 23 22 27 27 F 1.35099 * 120.03372 * 179.97438 * 26 24 23 28 28 C 1.38209 * 119.96437 * 89.99655 * 21 20 18 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 36 36 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 37 37 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 38 38 H 1.08992 * 109.47190 * 295.00092 * 7 5 4 39 39 H 1.09000 * 109.46906 * 55.00173 * 7 5 4 40 40 H 0.96999 * 119.99725 * 0.02562 * 8 7 5 41 41 H 0.97000 * 119.99649 * 180.02562 * 12 11 9 42 42 H 0.97005 * 120.00170 * 265.00722 * 17 5 4 43 43 H 1.09005 * 109.46941 * 299.99648 * 20 18 17 44 44 H 1.09002 * 109.47524 * 59.99836 * 20 18 17 45 45 H 1.08001 * 119.96661 * 0.02562 * 22 21 20 46 46 H 1.07999 * 119.99949 * 180.25287 * 23 22 21 47 47 H 1.08004 * 120.00340 * 359.95664 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6354 -2.1954 -1.1880 6 1 0.5564 -2.2707 -1.0528 7 6 2.0355 -2.8887 -2.4920 8 7 1.7571 -4.3233 -2.3876 9 6 2.0360 -5.1532 -3.4405 10 1 2.4609 -4.7501 -4.3479 11 6 1.7718 -6.5123 -3.3418 12 7 2.0395 -7.3100 -4.3540 13 14 1.0362 -7.2093 -1.7725 14 1 -0.4456 -7.1807 -1.8652 15 1 1.4940 -8.6103 -1.5910 16 1 1.4757 -6.3910 -0.6139 17 7 2.3148 -2.8420 -0.0627 18 6 1.7816 -2.7779 1.1734 19 8 0.7389 -2.1852 1.3541 20 6 2.4808 -3.4426 2.3311 21 6 1.6844 -3.2237 3.5917 22 6 1.9339 -2.1177 4.3828 23 6 1.2015 -1.9122 5.5368 24 6 0.2244 -2.8198 5.9071 25 9 -0.4881 -2.6227 7.0379 26 6 -0.0222 -3.9319 5.1165 27 9 -0.9751 -4.8194 5.4761 28 6 0.7094 -4.1319 3.9587 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6055 -0.2617 -2.1370 37 1 3.1264 -0.6442 -1.2952 38 1 1.4634 -2.4667 -3.3182 39 1 3.0998 -2.7373 -2.6722 40 1 1.3752 -4.6851 -1.5728 41 1 1.8544 -8.2597 -4.2852 42 1 3.1486 -3.3163 -0.2072 43 1 2.5684 -4.5117 2.1373 44 1 3.4751 -3.0123 2.4507 45 1 2.6989 -1.4111 4.0965 46 1 1.3946 -1.0457 6.1518 47 1 0.5179 -4.9975 3.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496284784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:57 Heat of formation + Delta-G solvation = -101.664405 kcal Electronic energy + Delta-G solvation = -30234.436834 eV Core-core repulsion = 25860.145466 eV Total energy + Delta-G solvation = -4374.291368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.64747 -48.72368 -40.39472 -39.06582 -36.84689 -35.15885 -33.60709 -32.82542 -31.42142 -31.05501 -29.68256 -27.48497 -26.98675 -25.83414 -23.55238 -22.91981 -22.26377 -21.02314 -20.28190 -19.77699 -18.18555 -17.84430 -17.43697 -17.18632 -17.01946 -16.45460 -15.99150 -15.72783 -15.13690 -14.89401 -14.70887 -14.62807 -14.31984 -14.21319 -14.18745 -13.63992 -13.57814 -13.39539 -13.13329 -12.83516 -12.50149 -12.37673 -12.17231 -12.13584 -12.02164 -11.95373 -11.72454 -11.51255 -11.31869 -11.18696 -10.93166 -10.61014 -10.40389 -10.28357 -10.13632 -9.71623 -9.67703 -9.30795 -9.01213 -8.85643 -8.79910 -7.33726 -5.84883 -3.21395 0.63666 0.75496 2.69578 2.96435 3.27173 3.33963 3.39204 3.44081 3.55689 4.08959 4.21627 4.30380 4.50981 4.69326 4.72780 4.81662 4.90813 5.02324 5.06372 5.08982 5.22298 5.39810 5.43545 5.45178 5.48042 5.55567 5.56786 5.64096 5.71947 5.74153 5.80739 5.90039 5.91638 5.99710 6.01867 6.06577 6.17484 6.30850 6.35245 6.48253 6.51169 6.55124 6.70671 6.78116 7.65734 7.90353 8.32953 8.34957 9.12313 9.84261 10.03535 11.33320 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.003798 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.313087 B = 7370.766644 C = 9774.766553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.132 3.868 6 H 0.091 0.909 7 C 0.149 3.851 8 N -0.754 5.754 9 C -0.247 4.247 10 H 0.091 0.909 11 C 0.007 3.993 12 N -0.932 5.932 13 Si 0.884 3.116 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.279 1.279 17 N -0.713 5.713 18 C 0.511 3.489 19 O -0.526 6.526 20 C -0.109 4.109 21 C -0.038 4.038 22 C -0.086 4.086 23 C -0.124 4.124 24 C 0.062 3.938 25 F -0.132 7.132 26 C 0.070 3.930 27 F -0.130 7.130 28 C -0.111 4.111 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.404 0.596 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.145 0.855 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 14.261 18.565 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.028 3.972 6 H 0.109 0.891 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.189 4.189 12 N -0.579 5.579 13 Si 0.715 3.285 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.205 1.205 17 N -0.365 5.365 18 C 0.296 3.704 19 O -0.403 6.403 20 C -0.149 4.149 21 C -0.039 4.039 22 C -0.104 4.104 23 C -0.143 4.143 24 C 0.042 3.958 25 F -0.110 7.110 26 C 0.050 3.950 27 F -0.108 7.108 28 C -0.130 4.130 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.239 0.761 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.053 14.577 18.496 23.639 hybrid contribution -0.465 -1.053 1.161 1.635 sum 1.588 13.524 19.657 23.913 Atomic orbital electron populations 1.21827 0.94968 1.02988 0.99720 1.21131 0.96540 0.94840 0.98466 1.21870 1.00316 0.96979 1.01222 1.22008 1.00973 0.94556 0.98528 1.21445 0.98452 0.91430 0.85910 0.89095 1.20948 0.98538 0.85103 0.93323 1.42681 1.77867 1.02746 1.16760 1.19042 1.35561 0.88812 0.94293 0.89149 1.24669 1.01110 0.96006 0.97125 1.69700 1.53659 1.04152 1.30429 0.86566 0.79520 0.78411 0.84013 1.21088 1.21687 1.20529 1.46040 1.27450 1.55661 1.07300 1.20284 0.85760 0.80451 0.83869 1.90734 1.22783 1.42463 1.84324 1.20753 0.99634 1.03876 0.90665 1.19171 0.95568 0.94053 0.95084 1.20907 0.99491 0.96724 0.93262 1.21006 0.95392 0.99256 0.98605 1.17687 0.96018 0.96539 0.85542 1.91519 1.76749 1.94899 1.47871 1.17609 0.91799 0.89231 0.96346 1.91534 1.61365 1.66385 1.91518 1.20973 0.95563 1.01492 0.94977 0.90663 0.93878 0.94267 0.90742 0.93268 0.93305 0.93068 0.91012 0.91817 0.94082 0.94988 0.80467 0.92971 0.76106 0.87305 0.87339 0.84358 0.83726 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.04 37.16 0.30 -1.47 16 2 C -0.09 -1.06 2.38 -90.62 -0.22 -1.28 16 3 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 4 C -0.12 -1.43 4.36 -26.73 -0.12 -1.54 16 5 C 0.13 1.85 2.33 -67.93 -0.16 1.69 16 6 H 0.09 1.46 5.92 -51.93 -0.31 1.15 16 7 C 0.15 2.56 5.82 -4.04 -0.02 2.54 16 8 N -0.75 -16.59 5.24 -59.91 -0.31 -16.90 16 9 C -0.25 -6.68 10.47 -15.06 -0.16 -6.83 16 10 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 11 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 12 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 13 Si 0.88 21.45 27.74 -169.99 -4.71 16.74 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 17 N -0.71 -8.91 4.47 -53.81 -0.24 -9.15 16 18 C 0.51 6.23 6.38 -10.99 -0.07 6.16 16 19 O -0.53 -7.74 11.00 5.55 0.06 -7.68 16 20 C -0.11 -0.97 5.83 -29.03 -0.17 -1.14 16 21 C -0.04 -0.37 4.37 -104.63 -0.46 -0.83 16 22 C -0.09 -0.73 9.69 -39.59 -0.38 -1.11 16 23 C -0.12 -1.10 10.02 -39.53 -0.40 -1.50 16 24 C 0.06 0.70 7.31 -39.37 -0.29 0.41 16 25 F -0.13 -1.59 17.18 2.25 0.04 -1.56 16 26 C 0.07 0.85 7.31 -39.37 -0.29 0.57 16 27 F -0.13 -1.74 17.18 2.25 0.04 -1.70 16 28 C -0.11 -1.25 9.68 -39.53 -0.38 -1.63 16 29 H 0.07 1.13 4.76 -51.93 -0.25 0.88 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.93 5.19 -51.93 -0.27 0.66 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.36 7.90 5.20 -40.82 -0.21 7.68 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 42 H 0.40 4.66 8.60 -40.82 -0.35 4.31 16 43 H 0.11 0.91 8.09 -51.93 -0.42 0.49 16 44 H 0.11 0.65 8.08 -51.93 -0.42 0.23 16 45 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -32.02 385.85 -7.99 -40.02 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.89 Total: 9.15 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.56 Total: -6.98 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.22 Total: -53.81 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.06 Total: -7.68 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.08 Total: -3.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.02 -7.99 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496284784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.646 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds