Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.52996 * 109.47276 * 294.99872 * 4 2 1 6 6 H 1.09001 * 109.47166 * 55.00144 * 5 4 2 7 7 C 1.53004 * 109.47021 * 174.99763 * 5 4 2 8 8 N 1.46506 * 109.46993 * 174.99953 * 7 5 4 9 9 C 1.36932 * 120.00065 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00108 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99892 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99813 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00183 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46992 * 90.00195 * 13 11 9 15 15 H 1.48498 * 109.46962 * 210.00540 * 13 11 9 16 16 H 1.48500 * 109.46787 * 330.00230 * 13 11 9 17 17 N 1.46494 * 109.47345 * 295.00054 * 5 4 2 18 18 C 1.34774 * 120.00249 * 84.99769 * 17 5 4 19 19 O 1.21289 * 119.99958 * 0.02562 * 18 17 5 20 20 C 1.50696 * 120.00360 * 180.02562 * 18 17 5 21 21 C 1.50706 * 109.47408 * 179.97438 * 20 18 17 22 22 C 1.38250 * 119.96472 * 269.72566 * 21 20 18 23 23 C 1.38214 * 120.06959 * 179.76496 * 22 21 20 24 24 C 1.38410 * 119.99950 * 0.50688 * 23 22 21 25 25 F 1.35101 * 120.03730 * 179.72219 * 24 23 22 26 26 C 1.38651 * 119.92832 * 359.74631 * 24 23 22 27 27 F 1.35099 * 120.03372 * 179.97438 * 26 24 23 28 28 C 1.38209 * 119.96437 * 89.99655 * 21 20 18 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 32 32 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 36 36 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 37 37 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 38 38 H 1.08992 * 109.47190 * 295.00092 * 7 5 4 39 39 H 1.09000 * 109.46906 * 55.00173 * 7 5 4 40 40 H 0.96999 * 119.99725 * 0.02562 * 8 7 5 41 41 H 0.97000 * 119.99649 * 180.02562 * 12 11 9 42 42 H 0.97005 * 120.00170 * 265.00722 * 17 5 4 43 43 H 1.09005 * 109.46941 * 299.99648 * 20 18 17 44 44 H 1.09002 * 109.47524 * 59.99836 * 20 18 17 45 45 H 1.08001 * 119.96661 * 0.02562 * 22 21 20 46 46 H 1.07999 * 119.99949 * 180.25287 * 23 22 21 47 47 H 1.08004 * 120.00340 * 359.95664 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6354 -2.1954 -1.1880 6 1 0.5564 -2.2707 -1.0528 7 6 2.0355 -2.8887 -2.4920 8 7 1.7571 -4.3233 -2.3876 9 6 2.0360 -5.1532 -3.4405 10 1 2.4609 -4.7501 -4.3479 11 6 1.7718 -6.5123 -3.3418 12 7 2.0395 -7.3100 -4.3540 13 14 1.0362 -7.2093 -1.7725 14 1 -0.4456 -7.1807 -1.8652 15 1 1.4940 -8.6103 -1.5910 16 1 1.4757 -6.3910 -0.6139 17 7 2.3148 -2.8420 -0.0627 18 6 1.7816 -2.7779 1.1734 19 8 0.7389 -2.1852 1.3541 20 6 2.4808 -3.4426 2.3311 21 6 1.6844 -3.2237 3.5917 22 6 1.9339 -2.1177 4.3828 23 6 1.2015 -1.9122 5.5368 24 6 0.2244 -2.8198 5.9071 25 9 -0.4881 -2.6227 7.0379 26 6 -0.0222 -3.9319 5.1165 27 9 -0.9751 -4.8194 5.4761 28 6 0.7094 -4.1319 3.9587 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6055 -0.2617 -2.1370 37 1 3.1264 -0.6442 -1.2952 38 1 1.4634 -2.4667 -3.3182 39 1 3.0998 -2.7373 -2.6722 40 1 1.3752 -4.6851 -1.5728 41 1 1.8544 -8.2597 -4.2852 42 1 3.1486 -3.3163 -0.2072 43 1 2.5684 -4.5117 2.1373 44 1 3.4751 -3.0123 2.4507 45 1 2.6989 -1.4111 4.0965 46 1 1.3946 -1.0457 6.1518 47 1 0.5179 -4.9975 3.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496284784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = -120.671170 kcal Electronic energy + Delta-G solvation = -30235.261029 eV Core-core repulsion = 25860.145466 eV Total energy + Delta-G solvation = -4375.115563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.54486 -49.63179 -41.32303 -39.89288 -37.94967 -36.52037 -34.98414 -33.69724 -33.16087 -31.82533 -30.94212 -28.30389 -27.88059 -27.29087 -24.38413 -24.26350 -23.45565 -22.22238 -21.24685 -20.71886 -19.78320 -18.98837 -18.25178 -18.03925 -18.00871 -17.35661 -17.05902 -16.87118 -16.37193 -16.06471 -15.78797 -15.66358 -15.52044 -15.09000 -15.00739 -14.86153 -14.66722 -14.57451 -14.41686 -14.10582 -13.79835 -13.45626 -13.26743 -12.98623 -12.91557 -12.90199 -12.87172 -12.71044 -12.48108 -12.37177 -12.25546 -12.02171 -11.83251 -11.61319 -11.33319 -11.19344 -11.02879 -10.66761 -10.07462 -9.83756 -9.65686 -9.30100 -8.02568 -5.35673 -0.14849 0.00714 1.33845 1.40251 1.46311 1.79089 2.14752 2.47069 2.57463 2.77454 3.27058 3.30224 3.47090 3.51762 3.61985 3.90842 4.00040 4.07615 4.11426 4.14273 4.18843 4.38021 4.42293 4.45576 4.61219 4.68737 4.76359 4.83757 4.85655 4.90552 4.93157 4.95598 4.99046 5.02671 5.05045 5.14464 5.21853 5.29267 5.34593 5.44182 5.62783 5.67498 5.71326 5.73365 5.77783 6.21111 6.72307 7.08260 7.42051 7.83701 8.02336 9.18888 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.003798 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.313087 B = 7370.766644 C = 9774.766553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.114 4.114 5 C 0.145 3.855 6 H 0.070 0.930 7 C 0.147 3.853 8 N -0.755 5.755 9 C -0.230 4.230 10 H 0.060 0.940 11 C -0.060 4.060 12 N -0.983 5.983 13 Si 0.948 3.052 14 H -0.292 1.292 15 H -0.296 1.296 16 H -0.243 1.243 17 N -0.713 5.713 18 C 0.508 3.492 19 O -0.553 6.553 20 C -0.103 4.103 21 C -0.042 4.042 22 C -0.076 4.076 23 C -0.116 4.116 24 C 0.045 3.955 25 F -0.142 7.142 26 C 0.043 3.957 27 F -0.146 7.146 28 C -0.123 4.123 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.365 0.635 41 H 0.257 0.743 42 H 0.411 0.589 43 H 0.117 0.883 44 H 0.147 0.853 45 H 0.172 0.828 46 H 0.173 0.827 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 16.342 20.372 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 C -0.199 4.199 4 C -0.153 4.153 5 C 0.040 3.960 6 H 0.088 0.912 7 C 0.020 3.980 8 N -0.401 5.401 9 C -0.361 4.361 10 H 0.078 0.922 11 C -0.252 4.252 12 N -0.634 5.634 13 Si 0.776 3.224 14 H -0.219 1.219 15 H -0.223 1.223 16 H -0.167 1.167 17 N -0.365 5.365 18 C 0.296 3.704 19 O -0.432 6.432 20 C -0.142 4.142 21 C -0.043 4.043 22 C -0.094 4.094 23 C -0.135 4.135 24 C 0.025 3.975 25 F -0.121 7.121 26 C 0.023 3.977 27 F -0.125 7.125 28 C -0.142 4.142 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.199 0.801 41 H 0.066 0.934 42 H 0.247 0.753 43 H 0.136 0.864 44 H 0.165 0.835 45 H 0.189 0.811 46 H 0.190 0.810 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.724 16.710 20.338 26.584 hybrid contribution -0.969 -1.589 0.510 1.930 sum 2.754 15.121 20.848 25.901 Atomic orbital electron populations 1.21769 0.96211 1.01405 0.99722 1.21064 0.95360 0.95983 0.98020 1.21819 1.01055 0.95541 1.01526 1.21950 1.01898 0.92639 0.98841 1.21151 0.97389 0.92666 0.84811 0.91213 1.21106 0.99005 0.82589 0.95251 1.42655 1.77666 1.04251 1.15480 1.19032 1.33315 0.89338 0.94379 0.92166 1.25424 1.02650 0.96566 1.00513 1.69875 1.56152 1.04298 1.33044 0.85522 0.77872 0.77706 0.81326 1.21928 1.22255 1.16694 1.46007 1.27606 1.55794 1.07084 1.20826 0.85413 0.79954 0.84253 1.90743 1.24033 1.43711 1.84702 1.20804 1.00722 1.04320 0.88397 1.19378 0.95140 0.94088 0.95647 1.21311 0.99417 0.96391 0.92308 1.21363 0.94018 0.99213 0.98880 1.17998 0.96963 0.97121 0.85458 1.91487 1.77196 1.94977 1.48413 1.17921 0.92445 0.89836 0.97485 1.91480 1.62150 1.67052 1.91779 1.21095 0.96170 1.02168 0.94773 0.93000 0.94190 0.93910 0.91066 0.92927 0.92070 0.92884 0.90846 0.90268 0.94684 0.93791 0.80115 0.93412 0.75296 0.86448 0.83533 0.81087 0.80983 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.04 71.98 0.58 -2.67 16 2 C -0.09 -1.75 2.38 -10.79 -0.03 -1.78 16 3 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 4 C -0.11 -2.37 4.36 30.59 0.13 -2.24 16 5 C 0.15 3.77 2.33 44.99 0.10 3.88 16 6 H 0.07 2.17 5.92 -2.39 -0.01 2.15 16 7 C 0.15 4.83 5.82 86.38 0.50 5.34 16 8 N -0.75 -32.18 5.24 -343.44 -1.80 -33.98 16 9 C -0.23 -12.41 10.47 84.03 0.88 -11.53 16 10 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 11 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 12 N -0.98 -61.54 13.97 21.65 0.30 -61.24 16 13 Si 0.95 44.04 27.74 68.60 1.90 45.94 16 14 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 17 N -0.71 -15.69 4.47 -442.55 -1.98 -17.67 16 18 C 0.51 10.86 6.38 87.66 0.56 11.42 16 19 O -0.55 -15.17 11.00 -3.06 -0.03 -15.21 16 20 C -0.10 -1.43 5.83 29.10 0.17 -1.26 16 21 C -0.04 -0.70 4.37 -19.87 -0.09 -0.79 16 22 C -0.08 -1.01 9.69 22.27 0.22 -0.80 16 23 C -0.12 -1.75 10.02 22.30 0.22 -1.52 16 24 C 0.04 0.97 7.31 22.41 0.16 1.13 16 25 F -0.14 -3.40 17.18 44.97 0.77 -2.63 16 26 C 0.04 1.05 7.31 22.41 0.16 1.21 16 27 F -0.15 -4.05 17.18 44.97 0.77 -3.28 16 28 C -0.12 -2.63 9.68 22.30 0.22 -2.41 16 29 H 0.05 1.52 4.76 -2.39 -0.01 1.51 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.53 5.19 -2.39 -0.01 1.52 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.37 15.14 5.20 -92.71 -0.48 14.66 16 41 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.41 8.01 8.60 -92.70 -0.80 7.21 16 43 H 0.12 1.50 8.09 -2.38 -0.02 1.48 16 44 H 0.15 0.93 8.08 -2.39 -0.02 0.91 16 45 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 46 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -71.60 385.85 4.53 -67.07 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.33 Total: 27.64 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.93 Total: -6.65 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.47 Total: -112.88 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.03 Total: -15.21 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 1.55 Total: -5.91 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.94 kcal Total: -71.60 4.53 -67.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496284784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.601 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds