Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38204 * 120.00483 * 2 1 4 4 C 1.38423 * 120.00647 * 180.02562 * 3 2 1 5 5 F 1.35098 * 120.00435 * 179.97438 * 4 3 2 6 6 C 1.38478 * 119.99445 * 359.97438 * 4 3 2 7 7 C 1.50705 * 119.99609 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47121 * 279.97525 * 7 6 4 9 9 O 1.21282 * 120.00001 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00043 * 359.97438 * 10 8 7 12 12 C 1.46504 * 119.99763 * 180.02562 * 10 8 7 13 13 C 1.53004 * 109.47440 * 89.99635 * 12 10 8 14 14 C 1.52994 * 109.47112 * 179.97438 * 13 12 10 15 15 N 1.46496 * 109.47373 * 179.97438 * 14 13 12 16 16 C 1.46497 * 120.00030 * 270.00199 * 15 14 13 17 17 C 1.36936 * 120.00116 * 89.99741 * 15 14 13 18 18 H 1.08006 * 120.00021 * 20.36711 * 17 15 14 19 19 C 1.38813 * 120.00236 * 200.36507 * 17 15 14 20 20 N 1.31620 * 119.99723 * 14.99010 * 19 17 15 21 21 Si 1.86795 * 119.99973 * 194.98553 * 19 17 15 22 22 H 1.48510 * 109.47099 * 85.00408 * 21 19 17 23 23 H 1.48499 * 109.47248 * 205.00075 * 21 19 17 24 24 H 1.48504 * 109.47616 * 325.00640 * 21 19 17 25 25 C 1.38164 * 120.00432 * 359.97438 * 6 4 3 26 26 C 1.38430 * 119.99820 * 180.02562 * 2 1 3 27 27 F 1.35096 * 120.00060 * 359.94904 * 26 2 1 28 28 H 1.09002 * 109.46819 * 89.99594 * 1 2 3 29 29 H 1.08994 * 109.46923 * 210.00012 * 1 2 3 30 30 H 1.08995 * 109.46578 * 329.99777 * 1 2 3 31 31 H 1.08001 * 119.99626 * 359.75016 * 3 2 1 32 32 H 1.08996 * 109.47371 * 39.97720 * 7 6 4 33 33 H 1.09003 * 109.46865 * 159.97357 * 7 6 4 34 34 H 1.09002 * 109.47044 * 90.00420 * 11 10 8 35 35 H 1.09004 * 109.47626 * 210.00794 * 11 10 8 36 36 H 1.09003 * 109.47839 * 330.00484 * 11 10 8 37 37 H 1.09004 * 109.46687 * 209.99454 * 12 10 8 38 38 H 1.09000 * 109.46910 * 329.98966 * 12 10 8 39 39 H 1.08995 * 109.46671 * 300.00071 * 13 12 10 40 40 H 1.08998 * 109.46715 * 59.99838 * 13 12 10 41 41 H 1.09003 * 109.47074 * 300.00373 * 14 13 12 42 42 H 1.09004 * 109.47378 * 59.99684 * 14 13 12 43 43 H 1.09003 * 109.47465 * 95.09548 * 16 15 14 44 44 H 1.08995 * 109.47025 * 215.09325 * 16 15 14 45 45 H 1.08997 * 109.47299 * 335.09422 * 16 15 14 46 46 H 0.96994 * 119.99446 * 179.97438 * 20 19 17 47 47 H 1.07998 * 120.00296 * 180.02562 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1968 0.0000 4 6 3.5824 1.1969 -0.0005 5 9 4.2579 2.3668 -0.0011 6 6 4.2747 -0.0024 -0.0005 7 6 5.7818 -0.0024 -0.0005 8 6 6.2841 0.2437 -1.3998 9 8 5.4960 0.4038 -2.3077 10 7 7.6091 0.2858 -1.6425 11 6 8.5611 0.0929 -0.5459 12 6 8.0974 0.5256 -3.0028 13 6 8.2680 2.0297 -3.2257 14 6 8.7785 2.2800 -4.6461 15 7 8.9414 3.7201 -4.8598 16 6 7.8268 4.5136 -5.3836 17 6 10.1354 4.3247 -4.5699 18 1 11.0376 3.7346 -4.5045 19 6 10.1862 5.6959 -4.3602 20 7 9.0765 6.3705 -4.1462 21 14 11.8296 6.5837 -4.3817 22 1 12.1880 6.9281 -5.7812 23 1 11.7311 7.8271 -3.5757 24 1 12.8763 5.7019 -3.8055 25 6 3.5839 -1.1990 0.0005 26 6 2.1992 -1.1989 -0.0005 27 9 1.5237 -2.3688 0.0000 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6582 2.1321 -0.0041 32 1 6.1451 0.7850 0.6597 33 1 6.1451 -0.9680 0.3514 34 1 8.7969 -0.9671 -0.4517 35 1 9.4738 0.6511 -0.7546 36 1 8.1210 0.4513 0.3847 37 1 9.0574 0.0272 -3.1373 38 1 7.3792 0.1309 -3.7214 39 1 7.3081 2.5281 -3.0911 40 1 8.9862 2.4243 -2.5070 41 1 9.7386 1.7815 -4.7802 42 1 8.0607 1.8853 -5.3651 43 1 7.2801 4.9636 -4.5549 44 1 8.2135 5.2990 -6.0328 45 1 7.1574 3.8685 -5.9527 46 1 9.1121 7.3286 -3.9993 47 1 4.1238 -2.1343 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502356997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = -82.156836 kcal Electronic energy + Delta-G solvation = -29500.835015 eV Core-core repulsion = 25127.389558 eV Total energy + Delta-G solvation = -4373.445456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.17535 -49.01407 -40.14756 -38.98503 -36.24836 -35.26003 -34.19292 -32.32314 -30.67451 -30.38686 -29.65782 -26.94409 -26.37624 -25.76792 -24.68137 -23.36197 -22.28179 -21.43376 -20.15412 -19.16931 -17.69855 -17.41432 -17.27051 -17.15006 -16.67009 -16.10086 -15.87726 -15.47967 -15.40177 -14.70344 -14.57634 -14.50178 -14.12610 -13.70504 -13.64919 -13.59209 -13.39453 -13.32117 -13.20485 -12.89113 -12.82862 -12.63398 -12.31864 -12.22962 -12.07092 -11.71848 -11.44242 -11.37589 -11.25285 -10.87641 -10.79627 -10.64572 -10.38742 -10.01794 -9.87545 -9.77715 -9.66481 -9.22783 -8.65383 -8.57625 -8.45855 -6.70389 -5.66014 -3.09473 0.67732 0.76376 2.66983 2.90633 3.23288 3.40962 3.46799 3.48099 3.85358 3.95651 4.15761 4.31302 4.47821 4.54722 4.57591 4.78824 4.97106 5.03049 5.10346 5.18007 5.23583 5.28708 5.34939 5.43900 5.47268 5.55448 5.57069 5.63966 5.65293 5.80998 5.85006 5.88593 5.89965 6.09082 6.16691 6.29055 6.53636 6.54433 6.70918 6.86897 6.92059 7.19669 7.43934 7.45894 7.80352 7.87067 8.23370 8.45596 9.29869 9.94864 10.43972 11.39138 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.002372 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.404622 B =11804.013171 C =12429.656016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.128 4.128 4 C 0.117 3.883 5 F -0.127 7.127 6 C -0.077 4.077 7 C -0.102 4.102 8 C 0.514 3.486 9 O -0.529 6.529 10 N -0.613 5.613 11 C 0.075 3.925 12 C 0.116 3.884 13 C -0.150 4.150 14 C 0.156 3.844 15 N -0.603 5.603 16 C 0.164 3.836 17 C -0.251 4.251 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.281 1.281 25 C -0.110 4.110 26 C 0.084 3.916 27 F -0.135 7.135 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.028 0.972 44 H 0.042 0.958 45 H -0.002 1.002 46 H 0.251 0.749 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 -17.582 13.163 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.097 3.903 5 F -0.105 7.105 6 C -0.079 4.079 7 C -0.142 4.142 8 C 0.301 3.699 9 O -0.405 6.405 10 N -0.346 5.346 11 C -0.068 4.068 12 C -0.006 4.006 13 C -0.191 4.191 14 C 0.028 3.972 15 N -0.325 5.325 16 C 0.019 3.981 17 C -0.381 4.381 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.129 4.129 26 C 0.065 3.935 27 F -0.114 7.114 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.062 0.938 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.811 -17.300 12.674 24.981 hybrid contribution 1.044 0.704 0.213 1.277 sum -11.767 -16.596 12.888 24.083 Atomic orbital electron populations 1.20760 0.89426 1.03598 1.03326 1.19728 0.97317 0.91036 1.01136 1.20866 0.92007 0.98929 1.02841 1.17458 0.89923 0.81237 1.01649 1.91562 1.80112 1.45382 1.93430 1.19141 0.95100 0.91517 1.02116 1.20661 0.91332 1.05495 0.96713 1.20275 0.82286 0.77110 0.90261 1.90736 1.54744 1.48834 1.46163 1.47918 1.05415 1.71260 1.10016 1.21831 0.94068 1.01191 0.89708 1.21658 0.99105 0.98179 0.81685 1.22614 1.02044 0.92857 1.01610 1.20725 0.97617 0.86385 0.92454 1.43998 1.12009 1.02554 1.73980 1.20777 0.88404 0.92640 0.96269 1.19205 0.85663 0.90996 1.42257 0.91389 1.24983 0.96799 0.97552 1.00675 1.70101 1.25432 1.07239 1.52461 0.86289 0.83563 0.79228 0.77540 1.21521 1.21834 1.20661 1.20788 0.92140 0.98518 1.01449 1.17361 0.89716 0.81084 1.05372 1.91485 1.80159 1.45715 1.94046 0.90268 0.90843 0.90597 0.83592 0.87231 0.87346 0.92623 0.90352 0.91248 0.90928 0.90343 0.92376 0.92010 0.93973 0.94473 0.95398 0.93945 0.98373 0.93834 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.83 36.01 0.35 -0.45 16 2 C -0.09 -0.89 5.88 -104.56 -0.62 -1.51 16 3 C -0.13 -1.36 9.68 -39.53 -0.38 -1.74 16 4 C 0.12 1.48 7.13 -39.42 -0.28 1.20 16 5 F -0.13 -1.87 16.66 2.25 0.04 -1.83 16 6 C -0.08 -0.89 4.43 -104.56 -0.46 -1.35 16 7 C -0.10 -1.05 4.11 -29.03 -0.12 -1.17 16 8 C 0.51 7.48 7.66 -10.99 -0.08 7.40 16 9 O -0.53 -9.95 15.53 5.56 0.09 -9.86 16 10 N -0.61 -8.24 2.87 -181.57 -0.52 -8.76 16 11 C 0.08 0.70 10.24 59.84 0.61 1.31 16 12 C 0.12 1.76 5.41 -4.04 -0.02 1.74 16 13 C -0.15 -2.93 5.86 -26.73 -0.16 -3.09 16 14 C 0.16 3.32 5.71 -4.05 -0.02 3.30 16 15 N -0.60 -15.89 2.93 -181.13 -0.53 -16.42 16 16 C 0.16 4.32 9.02 59.85 0.54 4.86 16 17 C -0.25 -7.07 9.68 -15.06 -0.15 -7.22 16 18 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 19 C 0.00 -0.06 5.06 -17.43 -0.09 -0.15 16 20 N -0.91 -27.30 10.67 55.49 0.59 -26.71 16 21 Si 0.90 22.22 29.58 -169.99 -5.03 17.19 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.11 -1.12 9.65 -39.52 -0.38 -1.50 16 26 C 0.08 0.88 7.24 -39.42 -0.29 0.59 16 27 F -0.14 -1.41 16.47 2.25 0.04 -1.37 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.48 7.64 -51.93 -0.40 0.08 16 30 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.02 7.20 -51.93 -0.37 0.64 16 33 H 0.11 0.74 7.97 -51.93 -0.41 0.33 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 36 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 37 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.08 1.27 7.42 -51.93 -0.39 0.88 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 42 H 0.04 0.74 7.86 -51.93 -0.41 0.34 16 43 H 0.03 0.80 7.40 -51.93 -0.38 0.41 16 44 H 0.04 1.18 7.21 -51.93 -0.37 0.80 16 45 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.14 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -34.94 396.69 -8.13 -43.06 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.24 Total: -3.49 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.54 Total: 2.22 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.46 Total: -51.88 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.07 Total: -3.21 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.94 -8.13 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502356997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.093 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds