Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38204 * 120.00483 * 2 1 4 4 C 1.38423 * 120.00647 * 180.02562 * 3 2 1 5 5 F 1.35098 * 120.00435 * 179.97438 * 4 3 2 6 6 C 1.38478 * 119.99445 * 359.97438 * 4 3 2 7 7 C 1.50705 * 119.99609 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47121 * 279.97525 * 7 6 4 9 9 O 1.21282 * 120.00001 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00043 * 359.97438 * 10 8 7 12 12 C 1.46504 * 119.99763 * 180.02562 * 10 8 7 13 13 C 1.53004 * 109.47440 * 89.99635 * 12 10 8 14 14 C 1.52994 * 109.47112 * 179.97438 * 13 12 10 15 15 N 1.46496 * 109.47373 * 179.97438 * 14 13 12 16 16 C 1.46497 * 120.00030 * 270.00199 * 15 14 13 17 17 C 1.36936 * 120.00116 * 89.99741 * 15 14 13 18 18 H 1.08006 * 120.00021 * 20.36711 * 17 15 14 19 19 C 1.38813 * 120.00236 * 200.36507 * 17 15 14 20 20 N 1.31620 * 119.99723 * 14.99010 * 19 17 15 21 21 Si 1.86795 * 119.99973 * 194.98553 * 19 17 15 22 22 H 1.48510 * 109.47099 * 85.00408 * 21 19 17 23 23 H 1.48499 * 109.47248 * 205.00075 * 21 19 17 24 24 H 1.48504 * 109.47616 * 325.00640 * 21 19 17 25 25 C 1.38164 * 120.00432 * 359.97438 * 6 4 3 26 26 C 1.38430 * 119.99820 * 180.02562 * 2 1 3 27 27 F 1.35096 * 120.00060 * 359.94904 * 26 2 1 28 28 H 1.09002 * 109.46819 * 89.99594 * 1 2 3 29 29 H 1.08994 * 109.46923 * 210.00012 * 1 2 3 30 30 H 1.08995 * 109.46578 * 329.99777 * 1 2 3 31 31 H 1.08001 * 119.99626 * 359.75016 * 3 2 1 32 32 H 1.08996 * 109.47371 * 39.97720 * 7 6 4 33 33 H 1.09003 * 109.46865 * 159.97357 * 7 6 4 34 34 H 1.09002 * 109.47044 * 90.00420 * 11 10 8 35 35 H 1.09004 * 109.47626 * 210.00794 * 11 10 8 36 36 H 1.09003 * 109.47839 * 330.00484 * 11 10 8 37 37 H 1.09004 * 109.46687 * 209.99454 * 12 10 8 38 38 H 1.09000 * 109.46910 * 329.98966 * 12 10 8 39 39 H 1.08995 * 109.46671 * 300.00071 * 13 12 10 40 40 H 1.08998 * 109.46715 * 59.99838 * 13 12 10 41 41 H 1.09003 * 109.47074 * 300.00373 * 14 13 12 42 42 H 1.09004 * 109.47378 * 59.99684 * 14 13 12 43 43 H 1.09003 * 109.47465 * 95.09548 * 16 15 14 44 44 H 1.08995 * 109.47025 * 215.09325 * 16 15 14 45 45 H 1.08997 * 109.47299 * 335.09422 * 16 15 14 46 46 H 0.96994 * 119.99446 * 179.97438 * 20 19 17 47 47 H 1.07998 * 120.00296 * 180.02562 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1968 0.0000 4 6 3.5824 1.1969 -0.0005 5 9 4.2579 2.3668 -0.0011 6 6 4.2747 -0.0024 -0.0005 7 6 5.7818 -0.0024 -0.0005 8 6 6.2841 0.2437 -1.3998 9 8 5.4960 0.4038 -2.3077 10 7 7.6091 0.2858 -1.6425 11 6 8.5611 0.0929 -0.5459 12 6 8.0974 0.5256 -3.0028 13 6 8.2680 2.0297 -3.2257 14 6 8.7785 2.2800 -4.6461 15 7 8.9414 3.7201 -4.8598 16 6 7.8268 4.5136 -5.3836 17 6 10.1354 4.3247 -4.5699 18 1 11.0376 3.7346 -4.5045 19 6 10.1862 5.6959 -4.3602 20 7 9.0765 6.3705 -4.1462 21 14 11.8296 6.5837 -4.3817 22 1 12.1880 6.9281 -5.7812 23 1 11.7311 7.8271 -3.5757 24 1 12.8763 5.7019 -3.8055 25 6 3.5839 -1.1990 0.0005 26 6 2.1992 -1.1989 -0.0005 27 9 1.5237 -2.3688 0.0000 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6582 2.1321 -0.0041 32 1 6.1451 0.7850 0.6597 33 1 6.1451 -0.9680 0.3514 34 1 8.7969 -0.9671 -0.4517 35 1 9.4738 0.6511 -0.7546 36 1 8.1210 0.4513 0.3847 37 1 9.0574 0.0272 -3.1373 38 1 7.3792 0.1309 -3.7214 39 1 7.3081 2.5281 -3.0911 40 1 8.9862 2.4243 -2.5070 41 1 9.7386 1.7815 -4.7802 42 1 8.0607 1.8853 -5.3651 43 1 7.2801 4.9636 -4.5549 44 1 8.2135 5.2990 -6.0328 45 1 7.1574 3.8685 -5.9527 46 1 9.1121 7.3286 -3.9993 47 1 4.1238 -2.1343 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502356997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = -101.706426 kcal Electronic energy + Delta-G solvation = -29501.682749 eV Core-core repulsion = 25127.389558 eV Total energy + Delta-G solvation = -4374.293190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.03433 -49.97832 -41.17512 -39.86848 -37.95200 -36.69277 -35.03182 -34.04486 -32.23832 -31.22544 -30.74138 -28.16830 -27.82220 -27.31522 -25.96228 -24.18004 -23.84094 -22.42686 -21.94451 -20.22549 -18.77743 -18.54549 -18.28839 -18.18999 -18.12679 -17.19129 -16.91365 -16.62809 -16.47712 -16.37166 -15.82047 -15.48211 -15.37304 -15.26241 -14.85477 -14.77296 -14.29788 -14.26509 -14.20513 -14.08565 -14.05236 -13.78596 -13.26276 -13.24557 -13.11619 -12.90104 -12.83249 -12.72265 -12.54909 -12.50359 -12.47354 -12.28745 -12.06185 -12.02646 -11.87360 -11.42476 -10.96537 -10.65102 -10.02984 -9.68131 -9.50085 -8.82640 -7.82987 -5.29900 -0.15377 -0.04093 1.45575 1.48392 1.56361 1.59428 1.98212 2.34466 2.51469 3.05905 3.13728 3.30565 3.37401 3.53032 3.65649 3.69164 3.78334 4.03152 4.09839 4.24945 4.31517 4.37548 4.41699 4.49905 4.54261 4.59514 4.65600 4.71031 4.73581 4.78209 4.78549 4.82345 4.89256 4.93231 4.97481 5.06001 5.13538 5.15247 5.24014 5.25713 5.41923 5.59162 5.62643 5.66090 5.74170 6.31105 6.40514 7.12516 7.16132 7.85574 8.31110 9.21696 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.002372 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.404622 B =11804.013171 C =12429.656016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.133 4.133 4 C 0.085 3.915 5 F -0.148 7.148 6 C -0.088 4.088 7 C -0.095 4.095 8 C 0.504 3.496 9 O -0.582 6.582 10 N -0.615 5.615 11 C 0.067 3.933 12 C 0.126 3.874 13 C -0.129 4.129 14 C 0.152 3.848 15 N -0.622 5.622 16 C 0.179 3.821 17 C -0.259 4.259 18 H 0.079 0.921 19 C -0.062 4.062 20 N -0.944 5.944 21 Si 0.973 3.027 22 H -0.286 1.286 23 H -0.298 1.298 24 H -0.264 1.264 25 C -0.108 4.108 26 C 0.075 3.925 27 F -0.135 7.135 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.120 0.880 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.015 0.985 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.049 0.951 43 H -0.005 1.005 44 H 0.020 0.980 45 H 0.025 0.975 46 H 0.246 0.754 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 -19.982 14.258 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.152 4.152 4 C 0.065 3.935 5 F -0.126 7.126 6 C -0.090 4.090 7 C -0.134 4.134 8 C 0.294 3.706 9 O -0.462 6.462 10 N -0.347 5.347 11 C -0.074 4.074 12 C 0.003 3.997 13 C -0.171 4.171 14 C 0.025 3.975 15 N -0.345 5.345 16 C 0.033 3.967 17 C -0.389 4.389 18 H 0.096 0.904 19 C -0.256 4.256 20 N -0.591 5.591 21 Si 0.801 3.199 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.188 1.188 25 C -0.126 4.126 26 C 0.056 3.944 27 F -0.114 7.114 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.177 0.823 32 H 0.138 0.862 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.014 0.986 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.055 0.945 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.718 -19.755 13.802 26.797 hybrid contribution 0.655 1.372 -0.135 1.526 sum -11.063 -18.383 13.666 25.438 Atomic orbital electron populations 1.20848 0.87483 1.04799 1.03956 1.20033 0.98771 0.90494 0.99969 1.21076 0.91502 1.00005 1.02607 1.17909 0.90930 0.81140 1.03484 1.91500 1.80639 1.46627 1.93870 1.19327 0.95895 0.91434 1.02331 1.20725 0.90597 1.08092 0.93954 1.21050 0.82188 0.75966 0.91437 1.90707 1.56111 1.51252 1.48100 1.48035 1.06000 1.70414 1.10275 1.22145 0.92940 1.03426 0.88901 1.21415 1.00531 0.94701 0.83063 1.22295 0.98888 0.95897 1.00006 1.20931 0.99142 0.83799 0.93589 1.44288 1.11518 1.04408 1.74267 1.20490 0.88634 0.92634 0.94905 1.19607 0.86658 0.91469 1.41168 0.90356 1.25851 1.00306 0.98465 1.00974 1.70296 1.27710 1.07020 1.54070 0.85190 0.79653 0.77717 0.77332 1.21254 1.22446 1.18834 1.21050 0.92210 0.99028 1.00356 1.17557 0.90126 0.81291 1.05463 1.91486 1.80168 1.45657 1.94052 0.89782 0.90142 0.88960 0.82298 0.86240 0.83100 0.89287 0.90839 0.89373 0.87627 0.91390 0.96619 0.93714 0.91882 0.93263 0.98635 0.96167 0.95700 0.94456 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.83 71.24 0.70 -0.75 16 2 C -0.09 -1.72 5.88 -19.83 -0.12 -1.84 16 3 C -0.13 -2.84 9.68 22.31 0.22 -2.62 16 4 C 0.08 2.19 7.13 22.37 0.16 2.35 16 5 F -0.15 -4.60 16.66 44.97 0.75 -3.85 16 6 C -0.09 -1.97 4.43 -19.82 -0.09 -2.05 16 7 C -0.09 -1.78 4.11 29.10 0.12 -1.66 16 8 C 0.50 14.31 7.66 87.66 0.67 14.98 16 9 O -0.58 -22.33 15.53 -3.04 -0.05 -22.38 16 10 N -0.62 -15.55 2.87 -846.75 -2.43 -17.98 16 11 C 0.07 1.04 10.24 127.77 1.31 2.34 16 12 C 0.13 3.68 5.41 86.38 0.47 4.15 16 13 C -0.13 -5.11 5.86 30.59 0.18 -4.93 16 14 C 0.15 6.37 5.71 86.38 0.49 6.86 16 15 N -0.62 -33.06 2.93 -726.96 -2.13 -35.19 16 16 C 0.18 9.71 9.02 127.77 1.15 10.87 16 17 C -0.26 -14.56 9.68 84.03 0.81 -13.74 16 18 H 0.08 4.16 7.86 -2.91 -0.02 4.13 16 19 C -0.06 -3.56 5.06 84.86 0.43 -3.13 16 20 N -0.94 -58.50 10.67 21.65 0.23 -58.27 16 21 Si 0.97 45.88 29.58 68.60 2.03 47.91 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 25 C -0.11 -2.02 9.65 22.31 0.22 -1.81 16 26 C 0.07 1.48 7.24 22.37 0.16 1.64 16 27 F -0.14 -2.60 16.47 44.97 0.74 -1.86 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.91 7.64 -2.39 -0.02 0.90 16 30 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 31 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.12 2.01 7.20 -2.39 -0.02 1.99 16 33 H 0.15 1.47 7.97 -2.39 -0.02 1.45 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.23 8.07 -2.38 -0.02 1.21 16 36 H 0.09 1.03 6.44 -2.39 -0.02 1.02 16 37 H 0.11 2.40 8.07 -2.38 -0.02 2.38 16 38 H 0.07 2.16 7.42 -2.39 -0.02 2.14 16 39 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 42 H 0.05 1.94 7.86 -2.38 -0.02 1.92 16 43 H 0.00 -0.28 7.40 -2.39 -0.02 -0.30 16 44 H 0.02 1.14 7.21 -2.39 -0.02 1.12 16 45 H 0.02 1.18 7.83 -2.39 -0.02 1.16 16 46 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 47 H 0.17 2.17 8.04 -2.91 -0.02 2.15 16 Total: -1.00 -79.23 396.69 6.99 -72.24 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.97 Total: 8.72 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.88 Total: 10.65 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.33 Total: -111.44 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 1.49 Total: -5.71 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.23 6.99 -72.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502356997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.467 kcal (2) G-P(sol) polarization free energy of solvation -79.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds