Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00080 * 2 1 4 4 H 1.08005 * 119.99939 * 182.48878 * 3 2 1 5 5 C 1.38813 * 119.99947 * 2.49396 * 3 2 1 6 6 N 1.31617 * 119.99932 * 349.86935 * 5 3 2 7 7 Si 1.86801 * 119.99791 * 170.14974 * 5 3 2 8 8 H 1.48495 * 109.47546 * 89.99919 * 7 5 3 9 9 H 1.48504 * 109.46631 * 209.99903 * 7 5 3 10 10 H 1.48498 * 109.47032 * 329.99532 * 7 5 3 11 11 C 1.46501 * 120.00033 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47466 * 270.01689 * 11 2 1 13 13 H 1.09007 * 109.87675 * 56.20974 * 12 11 2 14 14 C 1.54328 * 109.88200 * 295.20051 * 12 11 2 15 15 C 1.55157 * 102.94090 * 218.38837 * 14 12 11 16 16 C 1.54912 * 101.58250 * 35.49641 * 15 14 12 17 17 N 1.47018 * 109.89023 * 177.38711 * 12 11 2 18 18 C 1.34777 * 125.64629 * 298.34133 * 17 12 11 19 19 O 1.21506 * 120.00421 * 4.52365 * 18 17 12 20 20 C 1.48238 * 120.00082 * 184.52461 * 18 17 12 21 21 C 1.40569 * 119.74794 * 179.72645 * 20 18 17 22 22 N 1.31262 * 120.56679 * 179.74480 * 21 20 18 23 23 C 1.33777 * 119.80587 * 0.52413 * 22 21 20 24 24 C 1.40548 * 120.99824 * 179.71202 * 23 22 21 25 25 C 1.36073 * 119.75753 * 180.02562 * 24 23 22 26 26 C 1.39480 * 121.01367 * 0.02562 * 25 24 23 27 27 C 1.35992 * 120.98080 * 359.97438 * 26 25 24 28 28 C 1.40817 * 119.70339 * 0.02562 * 27 26 25 29 29 N 1.32174 * 119.74412 * 359.97438 * 20 18 17 30 30 H 1.08999 * 109.46922 * 60.28885 * 1 2 3 31 31 H 1.09005 * 109.46920 * 180.28803 * 1 2 3 32 32 H 1.09004 * 109.46669 * 300.28335 * 1 2 3 33 33 H 0.96994 * 119.99912 * 180.02562 * 6 5 3 34 34 H 1.09008 * 109.47099 * 30.01712 * 11 2 1 35 35 H 1.08995 * 109.47215 * 150.01126 * 11 2 1 36 36 H 1.09004 * 110.71576 * 336.75006 * 14 12 11 37 37 H 1.08993 * 110.72223 * 100.02268 * 14 12 11 38 38 H 1.09000 * 111.00373 * 153.57391 * 15 14 12 39 39 H 1.09003 * 111.00542 * 277.42301 * 15 14 12 40 40 H 1.09001 * 110.36740 * 81.83149 * 16 15 14 41 41 H 1.08994 * 110.36403 * 204.03923 * 16 15 14 42 42 H 1.07996 * 119.71364 * 359.97438 * 21 20 18 43 43 H 1.08006 * 120.12347 * 0.04600 * 24 23 22 44 44 H 1.08001 * 119.49532 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.50741 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.14951 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2290 1.1863 -0.0406 5 6 1.4567 2.3875 0.0523 6 7 0.1493 2.4002 -0.0988 7 14 2.3805 3.9872 0.3293 8 1 2.7807 4.5610 -0.9805 9 1 1.5023 4.9486 1.0434 10 1 3.5928 3.7238 1.1455 11 6 2.1976 -1.2687 -0.0006 12 6 2.4522 -1.7113 1.4417 13 1 1.5073 -1.7791 1.9809 14 6 3.3855 -0.7022 2.1433 15 6 4.2931 -1.6135 3.0112 16 6 4.4466 -2.8573 2.1006 17 7 3.1320 -3.0149 1.4522 18 6 2.6355 -4.1637 0.9521 19 8 1.5719 -4.1612 0.3647 20 6 3.3870 -5.4306 1.1188 21 6 2.8615 -6.6267 0.6001 22 7 3.5157 -7.7567 0.7341 23 6 4.6879 -7.7741 1.3786 24 6 5.4066 -8.9709 1.5418 25 6 6.5962 -8.9595 2.2022 26 6 7.1178 -7.7755 2.7232 27 6 6.4524 -6.5974 2.5859 28 6 5.2181 -6.5680 1.9088 29 7 4.5438 -5.4276 1.7582 30 1 -0.3633 0.5093 -0.8926 31 1 -0.3633 -1.0277 0.0052 32 1 -0.3633 0.5183 0.8875 33 1 -0.3350 3.2398 -0.0626 34 1 1.6086 -2.0281 -0.5150 35 1 3.1500 -1.1381 -0.5141 36 1 3.9778 -0.1519 1.4122 37 1 2.8129 -0.0188 2.7703 38 1 5.2585 -1.1422 3.1949 39 1 3.8025 -1.8741 3.9491 40 1 5.2206 -2.6864 1.3524 41 1 4.6849 -3.7374 2.6977 42 1 1.9130 -6.6152 0.0838 43 1 5.0161 -9.8961 1.1442 44 1 7.1452 -9.8815 2.3248 45 1 8.0644 -7.7944 3.2427 46 1 6.8689 -5.6884 2.9943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505433976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 86.714579 kcal Electronic energy + Delta-G solvation = -29369.177188 eV Core-core repulsion = 25453.743732 eV Total energy + Delta-G solvation = -3915.433456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.84042 -39.86738 -37.91732 -37.12499 -35.47914 -35.05505 -31.87719 -31.35406 -31.08938 -30.73248 -28.88423 -26.25698 -25.85292 -25.09914 -24.84669 -22.86953 -22.65781 -21.20436 -20.73561 -19.47738 -18.69516 -18.41920 -17.09107 -16.89290 -16.24883 -15.98165 -15.66688 -15.32968 -14.93095 -14.72274 -14.59195 -14.19353 -14.05249 -13.62179 -13.36327 -13.02404 -12.78481 -12.64128 -12.36666 -12.27487 -12.17820 -12.07795 -11.99519 -11.94780 -11.74923 -11.15288 -10.88290 -10.72713 -10.66154 -10.42204 -10.28284 -10.16514 -10.07522 -9.71557 -9.61704 -9.34866 -9.23581 -9.01446 -8.55921 -8.32184 -6.83166 -5.58752 -2.99867 -0.32014 0.07593 1.47580 2.16448 2.91990 3.03044 3.40727 3.46410 3.48172 3.58614 3.72562 3.74168 3.88311 4.33376 4.43782 4.54225 4.56623 4.71527 4.82570 4.91827 4.96458 5.21726 5.29619 5.42053 5.45489 5.47477 5.62752 5.70036 5.73200 5.76958 5.86846 5.89120 6.03661 6.04955 6.16223 6.22989 6.38154 6.42201 6.61722 6.69677 6.80518 6.85358 6.94260 7.01222 7.29080 7.70184 7.74320 7.76066 8.01474 8.20886 8.43934 9.32404 9.96397 10.40821 11.40471 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002636 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.696623 B =10619.118580 C =11550.723748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.605 5.605 3 C -0.240 4.240 4 H 0.074 0.926 5 C -0.006 4.006 6 N -0.915 5.915 7 Si 0.903 3.097 8 H -0.290 1.290 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.148 3.852 12 C 0.113 3.887 13 H 0.071 0.929 14 C -0.107 4.107 15 C -0.142 4.142 16 C 0.096 3.904 17 N -0.584 5.584 18 C 0.577 3.423 19 O -0.522 6.522 20 C 0.073 3.927 21 C 0.129 3.871 22 N -0.426 5.426 23 C 0.089 3.911 24 C -0.088 4.088 25 C -0.092 4.092 26 C -0.103 4.103 27 C -0.075 4.075 28 C 0.073 3.927 29 N -0.389 5.389 30 H 0.049 0.951 31 H -0.005 1.005 32 H 0.034 0.966 33 H 0.249 0.751 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.189 0.811 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.555 -21.860 7.879 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.328 5.328 3 C -0.370 4.370 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.563 5.563 7 Si 0.733 3.267 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.019 3.981 12 C 0.008 3.992 13 H 0.089 0.911 14 C -0.145 4.145 15 C -0.180 4.180 16 C -0.027 4.027 17 N -0.316 5.316 18 C 0.362 3.638 19 O -0.398 6.398 20 C -0.083 4.083 21 C -0.046 4.046 22 N -0.140 5.140 23 C -0.036 4.036 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.095 4.095 28 C -0.053 4.053 29 N -0.108 5.108 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.206 0.794 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.944 -21.829 7.566 26.985 hybrid contribution 0.494 1.016 0.242 1.155 sum 14.438 -20.813 7.807 26.507 Atomic orbital electron populations 1.21047 0.81479 0.93298 1.01752 1.44007 1.02469 1.00326 1.86033 1.19272 0.90671 0.83542 1.43478 0.90831 1.24838 0.95671 0.97687 1.02027 1.70244 1.05754 1.24594 1.55682 0.86269 0.78650 0.83943 0.77821 1.21738 1.21712 1.20702 1.21049 0.96317 0.88693 0.92038 1.22851 0.95281 0.79458 1.01619 0.91061 1.22557 0.97019 0.96350 0.98531 1.22910 1.00740 0.96063 0.98287 1.22729 0.84483 0.99482 0.96030 1.48569 1.19016 1.08189 1.55850 1.17209 0.84765 0.81502 0.80350 1.90831 1.21885 1.85179 1.41906 1.22641 0.92699 0.96443 0.96527 1.24021 0.99939 0.86686 0.93937 1.68842 1.05586 1.27677 1.11866 1.19815 0.92799 0.94576 0.96370 1.20832 0.94399 0.96619 0.98830 1.21090 0.95234 0.98859 0.96076 1.21042 1.00298 0.92026 0.98949 1.20903 0.92001 0.99464 0.97084 1.19735 0.96598 0.89458 0.99519 1.68865 1.05325 1.26779 1.09786 0.93285 0.98669 0.94794 0.94022 0.92702 0.93960 0.90018 0.90012 0.90374 0.91352 0.91730 0.88055 0.79410 0.84111 0.84563 0.84493 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.41 8.99 59.85 0.54 4.95 16 2 N -0.61 -15.49 2.86 -181.11 -0.52 -16.00 16 3 C -0.24 -6.47 8.61 -15.06 -0.13 -6.60 16 4 H 0.07 1.90 7.01 -52.48 -0.37 1.53 16 5 C -0.01 -0.17 5.42 -17.43 -0.09 -0.26 16 6 N -0.91 -26.78 9.52 55.49 0.53 -26.26 16 7 Si 0.90 21.77 29.56 -169.99 -5.03 16.74 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.15 3.23 5.12 -4.04 -0.02 3.21 16 12 C 0.11 2.11 3.16 -66.95 -0.21 1.90 16 13 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 14 C -0.11 -1.81 5.54 -24.89 -0.14 -1.95 16 15 C -0.14 -1.83 7.09 -24.58 -0.17 -2.00 16 16 C 0.10 1.26 6.12 -2.53 -0.02 1.25 16 17 N -0.58 -9.51 3.06 -163.98 -0.50 -10.01 16 18 C 0.58 9.58 7.66 -12.15 -0.09 9.48 16 19 O -0.52 -10.06 15.15 5.36 0.08 -9.98 16 20 C 0.07 1.02 6.73 -82.73 -0.56 0.46 16 21 C 0.13 1.64 10.75 -16.92 -0.18 1.46 16 22 N -0.43 -5.27 10.45 -10.53 -0.11 -5.38 16 23 C 0.09 0.99 6.60 -84.70 -0.56 0.43 16 24 C -0.09 -0.70 9.98 -39.49 -0.39 -1.09 16 25 C -0.09 -0.52 9.95 -39.90 -0.40 -0.91 16 26 C -0.10 -0.58 9.95 -39.93 -0.40 -0.98 16 27 C -0.08 -0.59 9.99 -39.41 -0.39 -0.99 16 28 C 0.07 0.81 6.60 -84.79 -0.56 0.25 16 29 N -0.39 -4.91 6.64 -7.39 -0.05 -4.96 16 30 H 0.05 1.39 6.92 -51.93 -0.36 1.03 16 31 H -0.01 -0.13 7.80 -51.93 -0.40 -0.53 16 32 H 0.03 0.94 7.19 -51.93 -0.37 0.56 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.05 1.26 6.41 -51.92 -0.33 0.92 16 35 H 0.04 0.92 7.97 -51.93 -0.41 0.50 16 36 H 0.08 1.49 6.59 -51.93 -0.34 1.15 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.23 5.60 -51.93 -0.29 0.94 16 42 H 0.19 2.15 7.62 -52.49 -0.40 1.75 16 43 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 46 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -32.27 371.17 -10.00 -42.27 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.23 Total: -0.63 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.78 Total: 8.61 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.65 Total: -62.61 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.27 -10.00 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505433976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.984 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds