Wall clock time and date at job start Sat Apr 11 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00080 * 2 1 4 4 H 1.08005 * 119.99939 * 182.48878 * 3 2 1 5 5 C 1.38813 * 119.99947 * 2.49396 * 3 2 1 6 6 N 1.31617 * 119.99932 * 349.86935 * 5 3 2 7 7 Si 1.86801 * 119.99791 * 170.14974 * 5 3 2 8 8 H 1.48495 * 109.47546 * 89.99919 * 7 5 3 9 9 H 1.48504 * 109.46631 * 209.99903 * 7 5 3 10 10 H 1.48498 * 109.47032 * 329.99532 * 7 5 3 11 11 C 1.46501 * 120.00033 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47466 * 270.01689 * 11 2 1 13 13 H 1.09007 * 109.87675 * 56.20974 * 12 11 2 14 14 C 1.54328 * 109.88200 * 295.20051 * 12 11 2 15 15 C 1.55157 * 102.94090 * 218.38837 * 14 12 11 16 16 C 1.54912 * 101.58250 * 35.49641 * 15 14 12 17 17 N 1.47018 * 109.89023 * 177.38711 * 12 11 2 18 18 C 1.34777 * 125.64629 * 298.34133 * 17 12 11 19 19 O 1.21506 * 120.00421 * 4.52365 * 18 17 12 20 20 C 1.48238 * 120.00082 * 184.52461 * 18 17 12 21 21 C 1.40569 * 119.74794 * 179.72645 * 20 18 17 22 22 N 1.31262 * 120.56679 * 179.74480 * 21 20 18 23 23 C 1.33777 * 119.80587 * 0.52413 * 22 21 20 24 24 C 1.40548 * 120.99824 * 179.71202 * 23 22 21 25 25 C 1.36073 * 119.75753 * 180.02562 * 24 23 22 26 26 C 1.39480 * 121.01367 * 0.02562 * 25 24 23 27 27 C 1.35992 * 120.98080 * 359.97438 * 26 25 24 28 28 C 1.40817 * 119.70339 * 0.02562 * 27 26 25 29 29 N 1.32174 * 119.74412 * 359.97438 * 20 18 17 30 30 H 1.08999 * 109.46922 * 60.28885 * 1 2 3 31 31 H 1.09005 * 109.46920 * 180.28803 * 1 2 3 32 32 H 1.09004 * 109.46669 * 300.28335 * 1 2 3 33 33 H 0.96994 * 119.99912 * 180.02562 * 6 5 3 34 34 H 1.09008 * 109.47099 * 30.01712 * 11 2 1 35 35 H 1.08995 * 109.47215 * 150.01126 * 11 2 1 36 36 H 1.09004 * 110.71576 * 336.75006 * 14 12 11 37 37 H 1.08993 * 110.72223 * 100.02268 * 14 12 11 38 38 H 1.09000 * 111.00373 * 153.57391 * 15 14 12 39 39 H 1.09003 * 111.00542 * 277.42301 * 15 14 12 40 40 H 1.09001 * 110.36740 * 81.83149 * 16 15 14 41 41 H 1.08994 * 110.36403 * 204.03923 * 16 15 14 42 42 H 1.07996 * 119.71364 * 359.97438 * 21 20 18 43 43 H 1.08006 * 120.12347 * 0.04600 * 24 23 22 44 44 H 1.08001 * 119.49532 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.50741 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.14951 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2290 1.1863 -0.0406 5 6 1.4567 2.3875 0.0523 6 7 0.1493 2.4002 -0.0988 7 14 2.3805 3.9872 0.3293 8 1 2.7807 4.5610 -0.9805 9 1 1.5023 4.9486 1.0434 10 1 3.5928 3.7238 1.1455 11 6 2.1976 -1.2687 -0.0006 12 6 2.4522 -1.7113 1.4417 13 1 1.5073 -1.7791 1.9809 14 6 3.3855 -0.7022 2.1433 15 6 4.2931 -1.6135 3.0112 16 6 4.4466 -2.8573 2.1006 17 7 3.1320 -3.0149 1.4522 18 6 2.6355 -4.1637 0.9521 19 8 1.5719 -4.1612 0.3647 20 6 3.3870 -5.4306 1.1188 21 6 2.8615 -6.6267 0.6001 22 7 3.5157 -7.7567 0.7341 23 6 4.6879 -7.7741 1.3786 24 6 5.4066 -8.9709 1.5418 25 6 6.5962 -8.9595 2.2022 26 6 7.1178 -7.7755 2.7232 27 6 6.4524 -6.5974 2.5859 28 6 5.2181 -6.5680 1.9088 29 7 4.5438 -5.4276 1.7582 30 1 -0.3633 0.5093 -0.8926 31 1 -0.3633 -1.0277 0.0052 32 1 -0.3633 0.5183 0.8875 33 1 -0.3350 3.2398 -0.0626 34 1 1.6086 -2.0281 -0.5150 35 1 3.1500 -1.1381 -0.5141 36 1 3.9778 -0.1519 1.4122 37 1 2.8129 -0.0188 2.7703 38 1 5.2585 -1.1422 3.1949 39 1 3.8025 -1.8741 3.9491 40 1 5.2206 -2.6864 1.3524 41 1 4.6849 -3.7374 2.6977 42 1 1.9130 -6.6152 0.0838 43 1 5.0161 -9.8961 1.1442 44 1 7.1452 -9.8815 2.3248 45 1 8.0644 -7.7944 3.2427 46 1 6.8689 -5.6884 2.9943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505433976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:04 Heat of formation + Delta-G solvation = 67.110762 kcal Electronic energy + Delta-G solvation = -29370.027273 eV Core-core repulsion = 25453.743732 eV Total energy + Delta-G solvation = -3916.283541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.69526 -41.12365 -38.96825 -38.19118 -37.21418 -36.09080 -33.51845 -32.78210 -31.89617 -31.53978 -30.50637 -28.02486 -27.17289 -26.65796 -25.74801 -24.15113 -23.33158 -22.90165 -22.01386 -20.77076 -19.48733 -19.39192 -18.87622 -18.12601 -17.60453 -17.05980 -16.67078 -16.60383 -16.09281 -15.83070 -15.47533 -15.41153 -15.31401 -15.13242 -14.75209 -14.57534 -14.24713 -14.07217 -13.65105 -13.48896 -13.05531 -12.97094 -12.94488 -12.88503 -12.82298 -12.73475 -12.70196 -12.64921 -12.28357 -12.05330 -11.90187 -11.77618 -11.61906 -11.44800 -11.29164 -10.62530 -10.23557 -10.12184 -9.76407 -9.62518 -8.90205 -7.71436 -5.15699 -1.12708 -0.70149 0.74832 1.30424 1.49083 1.50342 1.59624 1.69654 2.04303 2.53771 2.65634 2.91393 2.95942 3.08327 3.35990 3.44829 3.64932 3.68421 3.84793 3.87894 3.96259 4.08746 4.12197 4.26283 4.33179 4.38154 4.47698 4.51585 4.76380 4.79231 4.83687 4.87683 4.91009 5.00382 5.08534 5.11292 5.11831 5.16424 5.21490 5.35388 5.41021 5.44750 5.53072 5.62676 5.69967 5.81044 5.94617 6.29638 6.36398 6.48875 6.91241 7.17696 7.88279 8.31336 9.28089 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.002636 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.696623 B =10619.118580 C =11550.723748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.619 5.619 3 C -0.240 4.240 4 H 0.085 0.915 5 C -0.066 4.066 6 N -0.950 5.950 7 Si 0.971 3.029 8 H -0.290 1.290 9 H -0.298 1.298 10 H -0.262 1.262 11 C 0.154 3.846 12 C 0.123 3.877 13 H 0.046 0.954 14 C -0.104 4.104 15 C -0.125 4.125 16 C 0.098 3.902 17 N -0.588 5.588 18 C 0.576 3.424 19 O -0.561 6.561 20 C 0.050 3.950 21 C 0.118 3.882 22 N -0.438 5.438 23 C 0.074 3.926 24 C -0.108 4.108 25 C -0.067 4.067 26 C -0.084 4.084 27 C -0.086 4.086 28 C 0.055 3.945 29 N -0.386 5.386 30 H 0.022 0.978 31 H 0.007 0.993 32 H 0.013 0.987 33 H 0.243 0.757 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.187 0.813 43 H 0.152 0.848 44 H 0.178 0.822 45 H 0.179 0.821 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.347 -23.945 9.987 32.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.343 5.343 3 C -0.369 4.369 4 H 0.103 0.897 5 C -0.258 4.258 6 N -0.600 5.600 7 Si 0.799 3.201 8 H -0.218 1.218 9 H -0.225 1.225 10 H -0.186 1.186 11 C 0.027 3.973 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.142 4.142 15 C -0.163 4.163 16 C -0.023 4.023 17 N -0.319 5.319 18 C 0.362 3.638 19 O -0.440 6.440 20 C -0.105 4.105 21 C -0.056 4.056 22 N -0.151 5.151 23 C -0.051 4.051 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.104 4.104 27 C -0.106 4.106 28 C -0.072 4.072 29 N -0.105 5.105 30 H 0.041 0.959 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.204 0.796 43 H 0.170 0.830 44 H 0.195 0.805 45 H 0.196 0.804 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 18.772 -23.942 9.682 31.927 hybrid contribution -0.777 1.369 -0.380 1.619 sum 17.995 -22.573 9.302 30.330 Atomic orbital electron populations 1.20678 0.82334 0.93175 0.99411 1.44185 1.02268 1.01454 1.86421 1.19615 0.91232 0.83928 1.42145 0.89702 1.25667 0.96546 1.01038 1.02575 1.70446 1.07318 1.24871 1.57332 0.85195 0.77819 0.79495 0.77555 1.21764 1.22469 1.18636 1.21026 0.95428 0.86805 0.94076 1.22350 0.95406 0.81604 0.98873 0.93544 1.22423 0.97027 0.96099 0.98629 1.22897 1.01223 0.94571 0.97591 1.22907 0.82830 1.00353 0.96237 1.48579 1.20010 1.07112 1.56229 1.17649 0.84457 0.82380 0.79274 1.90793 1.23675 1.85975 1.43523 1.22057 0.93847 0.95092 0.99465 1.23932 1.00280 0.86744 0.94682 1.68843 1.06532 1.27239 1.12519 1.20337 0.92584 0.96046 0.96146 1.21111 0.95457 0.95905 1.00222 1.21643 0.93704 1.00565 0.92727 1.21583 1.01002 0.90815 0.96996 1.21219 0.90872 1.01418 0.97052 1.20202 0.97786 0.88840 1.00395 1.68702 1.04649 1.27933 1.09173 0.95944 0.97469 0.96878 0.94720 0.94395 0.93816 0.91085 0.91579 0.87300 0.90410 0.91020 0.86489 0.79597 0.83003 0.80507 0.80408 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.44 8.99 127.77 1.15 11.59 16 2 N -0.62 -32.90 2.86 -726.91 -2.08 -34.98 16 3 C -0.24 -13.12 8.61 84.03 0.72 -12.39 16 4 H 0.09 4.37 7.01 -2.91 -0.02 4.35 16 5 C -0.07 -3.72 5.42 84.86 0.46 -3.26 16 6 N -0.95 -57.64 9.52 21.65 0.21 -57.44 16 7 Si 0.97 45.21 29.56 68.60 2.03 47.24 16 8 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 9 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 11 C 0.15 7.01 5.12 86.38 0.44 7.45 16 12 C 0.12 4.77 3.16 45.34 0.14 4.91 16 13 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 14 C -0.10 -3.49 5.54 31.78 0.18 -3.31 16 15 C -0.12 -2.92 7.09 31.99 0.23 -2.70 16 16 C 0.10 2.43 6.12 86.86 0.53 2.96 16 17 N -0.59 -19.46 3.06 -791.00 -2.42 -21.88 16 18 C 0.58 20.05 7.66 86.90 0.67 20.71 16 19 O -0.56 -23.22 15.15 -3.73 -0.06 -23.28 16 20 C 0.05 1.43 6.73 42.32 0.28 1.71 16 21 C 0.12 3.17 10.75 85.35 0.92 4.09 16 22 N -0.44 -10.95 10.45 -187.22 -1.96 -12.91 16 23 C 0.07 1.56 6.60 40.35 0.27 1.82 16 24 C -0.11 -1.39 9.98 22.33 0.22 -1.16 16 25 C -0.07 -0.39 9.95 22.07 0.22 -0.17 16 26 C -0.08 -0.47 9.95 22.05 0.22 -0.25 16 27 C -0.09 -1.02 9.99 22.38 0.22 -0.80 16 28 C 0.06 1.12 6.60 40.48 0.27 1.39 16 29 N -0.39 -9.42 6.64 -177.28 -1.18 -10.60 16 30 H 0.02 1.33 6.92 -2.39 -0.02 1.32 16 31 H 0.01 0.35 7.80 -2.38 -0.02 0.33 16 32 H 0.01 0.75 7.19 -2.38 -0.02 0.73 16 33 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.04 1.84 6.41 -2.38 -0.02 1.82 16 35 H 0.04 1.95 7.97 -2.39 -0.02 1.93 16 36 H 0.07 2.54 6.59 -2.38 -0.02 2.53 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 2.59 5.60 -2.39 -0.01 2.57 16 42 H 0.19 4.77 7.62 -2.91 -0.02 4.75 16 43 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 44 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 45 H 0.18 -0.35 8.06 -2.91 -0.02 -0.38 16 46 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -74.87 371.17 2.68 -72.18 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.00 Total: 9.06 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 7.14 Total: 32.60 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -7.43 Total: -137.80 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.87 2.68 -72.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505433976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.294 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds