Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00233 * 2 1 4 4 H 1.08003 * 120.00203 * 210.79760 * 3 2 1 5 5 C 1.38813 * 119.99857 * 30.78651 * 3 2 1 6 6 N 1.31619 * 119.99761 * 6.80540 * 5 3 2 7 7 Si 1.86794 * 120.00279 * 186.79485 * 5 3 2 8 8 H 1.48505 * 109.47261 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47239 * 120.00337 * 7 5 3 10 10 H 1.48500 * 109.47731 * 240.00543 * 7 5 3 11 11 C 1.46500 * 120.00166 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47420 * 264.58540 * 11 2 1 13 13 H 1.09001 * 109.99086 * 306.39872 * 12 11 2 14 14 C 1.54316 * 109.88362 * 67.49478 * 12 11 2 15 15 C 1.55157 * 102.94463 * 141.61494 * 14 12 11 16 16 C 1.55129 * 101.48018 * 324.33202 * 15 14 12 17 17 N 1.47016 * 109.88463 * 185.30998 * 12 11 2 18 18 C 1.34771 * 125.65171 * 61.59843 * 17 12 11 19 19 O 1.21541 * 119.99952 * 4.05713 * 18 17 12 20 20 C 1.47918 * 120.00134 * 184.05333 * 18 17 12 21 21 N 1.32377 * 120.63134 * 76.04376 * 20 18 17 22 22 N 1.28097 * 123.17876 * 179.97438 * 21 20 18 23 23 C 1.31790 * 123.49506 * 0.02562 * 22 21 20 24 24 C 1.40410 * 119.14038 * 359.97438 * 23 22 21 25 25 C 1.40236 * 122.73669 * 180.02562 * 24 23 22 26 26 C 1.36252 * 119.36374 * 179.97438 * 25 24 23 27 27 C 1.39376 * 121.08080 * 0.02562 * 26 25 24 28 28 C 1.36362 * 121.08541 * 0.02562 * 27 26 25 29 29 C 1.39840 * 119.41823 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46707 * 274.54068 * 1 2 3 31 31 H 1.09000 * 109.47376 * 34.54261 * 1 2 3 32 32 H 1.09002 * 109.46904 * 154.54716 * 1 2 3 33 33 H 0.97004 * 119.99958 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.47476 * 144.57982 * 11 2 1 35 35 H 1.09005 * 109.47300 * 24.58342 * 11 2 1 36 36 H 1.09005 * 110.72021 * 259.98186 * 14 12 11 37 37 H 1.09005 * 110.72283 * 23.06942 * 14 12 11 38 38 H 1.08993 * 111.00414 * 82.57225 * 15 14 12 39 39 H 1.08999 * 111.00226 * 206.42528 * 15 14 12 40 40 H 1.08994 * 110.50161 * 278.44682 * 16 15 14 41 41 H 1.09002 * 110.33901 * 156.05975 * 16 15 14 42 42 H 1.08005 * 120.43229 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.31712 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.45924 * 180.02562 * 26 25 24 45 45 H 1.07996 * 119.45865 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.29097 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1155 1.2518 -0.4789 5 6 1.6024 2.3033 0.6153 6 7 0.4916 2.1927 1.3127 7 14 2.4423 3.9639 0.4539 8 1 3.6656 3.8214 -0.3760 9 1 1.5152 4.9268 -0.1932 10 1 2.8137 4.4641 1.8019 11 6 2.1975 -1.2687 -0.0006 12 6 2.5704 -1.6430 1.4353 13 1 3.1021 -0.8180 1.9094 14 6 1.2958 -1.9767 2.2387 15 6 1.7455 -3.1682 3.1249 16 6 2.7127 -3.9157 2.1698 17 7 3.4141 -2.8470 1.4352 18 6 4.6253 -2.9575 0.8546 19 8 5.1391 -1.9881 0.3316 20 6 5.3293 -4.2583 0.8538 21 7 4.9572 -5.2262 0.0310 22 7 5.5319 -6.3702 -0.0111 23 6 6.5495 -6.7016 0.7580 24 6 7.0446 -5.7641 1.6785 25 6 8.1233 -6.0363 2.5324 26 6 8.5481 -5.0750 3.3995 27 6 7.9280 -3.8279 3.4513 28 6 6.8761 -3.5302 2.6362 29 6 6.4129 -4.4925 1.7334 30 1 -0.3633 0.0814 1.0245 31 1 -0.3634 0.8465 -0.5827 32 1 -0.3633 -0.9279 -0.4417 33 1 0.1093 2.9735 1.7430 34 1 3.1045 -1.1644 -0.5961 35 1 1.5699 -2.0505 -0.4285 36 1 0.9955 -1.1293 2.8550 37 1 0.4860 -2.2726 1.5717 38 1 2.2650 -2.8176 4.0167 39 1 0.8973 -3.7989 3.3913 40 1 2.1546 -4.5476 1.4791 41 1 3.4235 -4.5125 2.7414 42 1 6.9969 -7.6817 0.6812 43 1 8.6125 -6.9986 2.5029 44 1 9.3789 -5.2828 4.0575 45 1 8.2865 -3.0850 4.1485 46 1 6.4048 -2.5598 2.6874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505439134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = 75.279550 kcal Electronic energy + Delta-G solvation = -29815.912223 eV Core-core repulsion = 25899.982907 eV Total energy + Delta-G solvation = -3915.929316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72617 -39.73917 -38.32237 -37.32136 -35.22313 -33.75235 -32.18627 -31.55179 -31.27694 -30.64930 -29.05155 -26.13303 -25.89111 -25.07624 -24.62970 -23.64174 -22.43413 -21.08999 -20.72226 -19.37288 -18.60318 -18.23974 -17.36573 -16.60753 -16.56204 -16.11097 -15.37213 -15.13209 -14.99730 -14.71160 -14.52180 -14.24436 -13.78023 -13.52247 -13.38685 -13.13473 -12.97556 -12.93433 -12.69619 -12.56276 -11.98500 -11.91081 -11.81535 -11.43353 -11.32310 -11.05716 -10.84002 -10.80395 -10.63611 -10.50158 -10.31042 -10.10353 -9.93620 -9.92336 -9.75655 -9.71866 -9.63082 -8.84156 -8.52894 -8.37950 -6.58496 -5.67987 -3.20492 -0.21385 0.26222 1.33158 2.45341 2.59871 2.93797 3.41455 3.48833 3.52675 3.53554 3.90968 4.02429 4.06063 4.22200 4.32521 4.56151 4.63612 4.67617 4.75485 4.81102 5.08486 5.10343 5.17994 5.28436 5.37145 5.44633 5.45759 5.55521 5.64834 5.75205 5.83478 5.83751 5.88978 5.94526 5.97447 6.14649 6.26019 6.34193 6.37966 6.56971 6.69022 6.79592 6.88911 7.10314 7.38150 7.66859 7.76513 7.92071 8.19913 8.51428 8.52145 9.31416 9.91179 10.44199 11.35704 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003201 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.559348 B = 8744.328330 C = 9401.989323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.593 5.593 3 C -0.251 4.251 4 H 0.067 0.933 5 C 0.008 3.992 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.146 3.854 12 C 0.117 3.883 13 H 0.084 0.916 14 C -0.110 4.110 15 C -0.134 4.134 16 C 0.100 3.900 17 N -0.594 5.594 18 C 0.588 3.412 19 O -0.508 6.508 20 C 0.095 3.905 21 N -0.229 5.229 22 N -0.260 5.260 23 C 0.088 3.912 24 C -0.081 4.081 25 C -0.092 4.092 26 C -0.096 4.096 27 C -0.095 4.095 28 C -0.083 4.083 29 C -0.056 4.056 30 H 0.035 0.965 31 H 0.037 0.963 32 H -0.003 1.003 33 H 0.251 0.749 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.180 0.820 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 -19.799 8.671 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.315 5.315 3 C -0.381 4.381 4 H 0.084 0.916 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.731 3.269 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.018 3.982 12 C 0.013 3.987 13 H 0.102 0.898 14 C -0.148 4.148 15 C -0.172 4.172 16 C -0.024 4.024 17 N -0.328 5.328 18 C 0.371 3.629 19 O -0.382 6.382 20 C -0.064 4.064 21 N -0.063 5.063 22 N -0.091 5.091 23 C -0.087 4.087 24 C -0.088 4.088 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.103 4.103 29 C -0.063 4.063 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.197 0.803 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.270 -19.613 7.100 23.708 hybrid contribution 1.474 1.284 1.227 2.308 sum 12.744 -18.329 8.327 23.827 Atomic orbital electron populations 1.20866 0.82786 0.95386 0.99446 1.43829 1.01615 1.00447 1.85628 1.19259 1.03092 0.87009 1.28732 0.91569 1.25193 0.97823 0.98889 0.97166 1.70012 1.20902 1.28529 1.35628 0.86223 0.79120 0.84225 0.77310 1.20172 1.21687 1.21697 1.21181 0.96283 0.88462 0.92315 1.22819 0.89588 0.84960 1.01302 0.89811 1.22568 0.96725 0.97648 0.97829 1.22839 0.98646 0.97940 0.97777 1.22378 0.95146 0.90480 0.94359 1.48679 1.16185 1.15254 1.52691 1.16975 0.80486 0.85826 0.79603 1.90904 1.65451 1.37177 1.44638 1.23138 0.93989 0.95954 0.93334 1.72961 1.21710 0.95426 1.16236 1.72699 1.07120 1.10143 1.19142 1.24770 0.93274 0.99923 0.90706 1.18857 0.97590 0.93951 0.98390 1.20976 0.95107 1.00280 0.94857 1.21135 0.99390 0.93095 0.97925 1.21166 0.94938 0.97060 0.98271 1.21104 0.96501 0.98909 0.93771 1.18623 0.95831 0.94863 0.97020 0.94702 0.94451 0.98460 0.93903 0.92898 0.94239 0.89420 0.90816 0.90909 0.90159 0.90921 0.92018 0.80312 0.84054 0.84732 0.84580 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.18 59.85 0.49 4.40 16 2 N -0.59 -15.23 2.78 -181.11 -0.50 -15.74 16 3 C -0.25 -7.12 9.59 -15.06 -0.14 -7.26 16 4 H 0.07 1.94 7.84 -52.48 -0.41 1.52 16 5 C 0.01 0.22 5.22 -17.43 -0.09 0.13 16 6 N -0.91 -26.03 10.88 55.49 0.60 -25.43 16 7 Si 0.90 22.36 29.56 -169.99 -5.02 17.33 16 8 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 C 0.15 3.28 5.15 -4.04 -0.02 3.26 16 12 C 0.12 2.31 3.06 -66.96 -0.21 2.10 16 13 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 14 C -0.11 -1.84 5.82 -24.90 -0.14 -1.99 16 15 C -0.13 -1.70 7.10 -24.46 -0.17 -1.87 16 16 C 0.10 1.34 6.66 -2.41 -0.02 1.33 16 17 N -0.59 -10.17 3.06 -163.96 -0.50 -10.68 16 18 C 0.59 10.79 6.11 -12.30 -0.08 10.72 16 19 O -0.51 -11.22 16.23 5.33 0.09 -11.13 16 20 C 0.09 1.50 5.60 -82.42 -0.46 1.04 16 21 N -0.23 -3.74 11.39 33.56 0.38 -3.36 16 22 N -0.26 -3.64 11.42 30.90 0.35 -3.29 16 23 C 0.09 0.88 11.20 -16.75 -0.19 0.69 16 24 C -0.08 -0.82 5.75 -106.85 -0.61 -1.43 16 25 C -0.09 -0.62 9.84 -39.55 -0.39 -1.01 16 26 C -0.10 -0.61 9.95 -39.87 -0.40 -1.01 16 27 C -0.09 -0.77 9.95 -39.83 -0.40 -1.17 16 28 C -0.08 -0.95 9.45 -39.66 -0.37 -1.33 16 29 C -0.06 -0.72 5.77 -106.57 -0.61 -1.34 16 30 H 0.03 0.89 7.24 -51.93 -0.38 0.51 16 31 H 0.04 0.98 7.66 -51.93 -0.40 0.58 16 32 H 0.00 -0.07 7.80 -51.93 -0.40 -0.47 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 34 H 0.05 1.31 6.78 -51.93 -0.35 0.96 16 35 H 0.04 0.83 7.67 -51.93 -0.40 0.43 16 36 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 42 H 0.18 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 45 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.14 1.77 7.33 -52.49 -0.38 1.39 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -34.28 379.77 -9.15 -43.43 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.45 Total: -2.13 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.82 Total: 5.26 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.33 Total: -58.49 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.28 -9.15 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505439134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.714 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds