Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00233 * 2 1 4 4 H 1.08003 * 120.00203 * 210.79760 * 3 2 1 5 5 C 1.38813 * 119.99857 * 30.78651 * 3 2 1 6 6 N 1.31619 * 119.99761 * 6.80540 * 5 3 2 7 7 Si 1.86794 * 120.00279 * 186.79485 * 5 3 2 8 8 H 1.48505 * 109.47261 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47239 * 120.00337 * 7 5 3 10 10 H 1.48500 * 109.47731 * 240.00543 * 7 5 3 11 11 C 1.46500 * 120.00166 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47420 * 264.58540 * 11 2 1 13 13 H 1.09001 * 109.99086 * 306.39872 * 12 11 2 14 14 C 1.54316 * 109.88362 * 67.49478 * 12 11 2 15 15 C 1.55157 * 102.94463 * 141.61494 * 14 12 11 16 16 C 1.55129 * 101.48018 * 324.33202 * 15 14 12 17 17 N 1.47016 * 109.88463 * 185.30998 * 12 11 2 18 18 C 1.34771 * 125.65171 * 61.59843 * 17 12 11 19 19 O 1.21541 * 119.99952 * 4.05713 * 18 17 12 20 20 C 1.47918 * 120.00134 * 184.05333 * 18 17 12 21 21 N 1.32377 * 120.63134 * 76.04376 * 20 18 17 22 22 N 1.28097 * 123.17876 * 179.97438 * 21 20 18 23 23 C 1.31790 * 123.49506 * 0.02562 * 22 21 20 24 24 C 1.40410 * 119.14038 * 359.97438 * 23 22 21 25 25 C 1.40236 * 122.73669 * 180.02562 * 24 23 22 26 26 C 1.36252 * 119.36374 * 179.97438 * 25 24 23 27 27 C 1.39376 * 121.08080 * 0.02562 * 26 25 24 28 28 C 1.36362 * 121.08541 * 0.02562 * 27 26 25 29 29 C 1.39840 * 119.41823 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46707 * 274.54068 * 1 2 3 31 31 H 1.09000 * 109.47376 * 34.54261 * 1 2 3 32 32 H 1.09002 * 109.46904 * 154.54716 * 1 2 3 33 33 H 0.97004 * 119.99958 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.47476 * 144.57982 * 11 2 1 35 35 H 1.09005 * 109.47300 * 24.58342 * 11 2 1 36 36 H 1.09005 * 110.72021 * 259.98186 * 14 12 11 37 37 H 1.09005 * 110.72283 * 23.06942 * 14 12 11 38 38 H 1.08993 * 111.00414 * 82.57225 * 15 14 12 39 39 H 1.08999 * 111.00226 * 206.42528 * 15 14 12 40 40 H 1.08994 * 110.50161 * 278.44682 * 16 15 14 41 41 H 1.09002 * 110.33901 * 156.05975 * 16 15 14 42 42 H 1.08005 * 120.43229 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.31712 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.45924 * 180.02562 * 26 25 24 45 45 H 1.07996 * 119.45865 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.29097 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1155 1.2518 -0.4789 5 6 1.6024 2.3033 0.6153 6 7 0.4916 2.1927 1.3127 7 14 2.4423 3.9639 0.4539 8 1 3.6656 3.8214 -0.3760 9 1 1.5152 4.9268 -0.1932 10 1 2.8137 4.4641 1.8019 11 6 2.1975 -1.2687 -0.0006 12 6 2.5704 -1.6430 1.4353 13 1 3.1021 -0.8180 1.9094 14 6 1.2958 -1.9767 2.2387 15 6 1.7455 -3.1682 3.1249 16 6 2.7127 -3.9157 2.1698 17 7 3.4141 -2.8470 1.4352 18 6 4.6253 -2.9575 0.8546 19 8 5.1391 -1.9881 0.3316 20 6 5.3293 -4.2583 0.8538 21 7 4.9572 -5.2262 0.0310 22 7 5.5319 -6.3702 -0.0111 23 6 6.5495 -6.7016 0.7580 24 6 7.0446 -5.7641 1.6785 25 6 8.1233 -6.0363 2.5324 26 6 8.5481 -5.0750 3.3995 27 6 7.9280 -3.8279 3.4513 28 6 6.8761 -3.5302 2.6362 29 6 6.4129 -4.4925 1.7334 30 1 -0.3633 0.0814 1.0245 31 1 -0.3634 0.8465 -0.5827 32 1 -0.3633 -0.9279 -0.4417 33 1 0.1093 2.9735 1.7430 34 1 3.1045 -1.1644 -0.5961 35 1 1.5699 -2.0505 -0.4285 36 1 0.9955 -1.1293 2.8550 37 1 0.4860 -2.2726 1.5717 38 1 2.2650 -2.8176 4.0167 39 1 0.8973 -3.7989 3.3913 40 1 2.1546 -4.5476 1.4791 41 1 3.4235 -4.5125 2.7414 42 1 6.9969 -7.6817 0.6812 43 1 8.6125 -6.9986 2.5029 44 1 9.3789 -5.2828 4.0575 45 1 8.2865 -3.0850 4.1485 46 1 6.4048 -2.5598 2.6874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505439134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 52.945080 kcal Electronic energy + Delta-G solvation = -29816.880718 eV Core-core repulsion = 25899.982907 eV Total energy + Delta-G solvation = -3916.897811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.65021 -41.10826 -39.09217 -38.83029 -37.15117 -34.73596 -33.52411 -32.96564 -32.57228 -31.50734 -30.72154 -28.00152 -27.09956 -26.80253 -25.46098 -24.71753 -23.53650 -22.82520 -22.07170 -20.70535 -19.45878 -19.21734 -18.73124 -18.48273 -17.81443 -17.19101 -16.84530 -16.35261 -16.10031 -15.75867 -15.61677 -15.54860 -15.19852 -15.09063 -14.87973 -14.75137 -14.36802 -14.04215 -13.72136 -13.68632 -13.44195 -13.25178 -13.16310 -12.82731 -12.70665 -12.53141 -12.43720 -12.31695 -12.19555 -12.15464 -11.97089 -11.77226 -11.68274 -11.56467 -11.13117 -10.84269 -10.68252 -10.45833 -9.91184 -9.61737 -8.69707 -7.86530 -5.42667 -1.02397 -0.51901 0.55941 1.13986 1.40416 1.41647 1.53161 1.61383 1.81407 2.46884 2.70921 2.86206 3.17990 3.26065 3.26446 3.51544 3.53207 3.59111 3.69258 3.78266 3.92171 3.98766 4.10136 4.17963 4.22672 4.35728 4.39274 4.41320 4.51220 4.54585 4.71948 4.78670 4.82437 4.83854 4.89101 5.01573 5.03002 5.08232 5.12720 5.23676 5.27183 5.30352 5.33723 5.40818 5.62678 5.67665 5.70586 6.26585 6.36293 6.78505 7.14487 7.57062 7.80392 8.27926 9.14470 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003201 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.559348 B = 8744.328330 C = 9401.989323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.606 5.606 3 C -0.271 4.271 4 H 0.045 0.955 5 C -0.032 4.032 6 N -0.922 5.922 7 Si 0.961 3.039 8 H -0.279 1.279 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.152 3.848 12 C 0.128 3.872 13 H 0.040 0.960 14 C -0.102 4.102 15 C -0.115 4.115 16 C 0.100 3.900 17 N -0.594 5.594 18 C 0.588 3.412 19 O -0.564 6.564 20 C 0.071 3.929 21 N -0.258 5.258 22 N -0.300 5.300 23 C 0.114 3.886 24 C -0.093 4.093 25 C -0.069 4.069 26 C -0.090 4.090 27 C -0.075 4.075 28 C -0.123 4.123 29 C -0.073 4.073 30 H 0.024 0.976 31 H 0.011 0.989 32 H 0.029 0.971 33 H 0.252 0.748 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.232 0.768 43 H 0.191 0.809 44 H 0.180 0.820 45 H 0.159 0.841 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.371 -23.367 11.071 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.329 5.329 3 C -0.401 4.401 4 H 0.063 0.937 5 C -0.229 4.229 6 N -0.567 5.567 7 Si 0.789 3.211 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.210 1.210 11 C 0.025 3.975 12 C 0.023 3.977 13 H 0.058 0.942 14 C -0.141 4.141 15 C -0.153 4.153 16 C -0.022 4.022 17 N -0.326 5.326 18 C 0.373 3.627 19 O -0.442 6.442 20 C -0.088 4.088 21 N -0.092 5.092 22 N -0.131 5.131 23 C -0.060 4.060 24 C -0.101 4.101 25 C -0.089 4.089 26 C -0.109 4.109 27 C -0.095 4.095 28 C -0.143 4.143 29 C -0.080 4.080 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.249 0.751 43 H 0.208 0.792 44 H 0.197 0.803 45 H 0.176 0.824 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.429 -23.238 9.514 28.475 hybrid contribution 1.003 2.268 0.537 2.537 sum 14.432 -20.970 10.051 27.368 Atomic orbital electron populations 1.20673 0.81972 0.95820 0.98509 1.43922 1.02212 1.00682 1.86133 1.19273 1.02790 0.88736 1.29309 0.93729 1.25801 0.98485 1.01708 0.96908 1.70127 1.21519 1.29247 1.35832 0.85307 0.78083 0.80357 0.77320 1.20452 1.20888 1.21035 1.21079 0.94809 0.87754 0.93867 1.22305 0.91041 0.85236 0.99161 0.94157 1.22419 0.94932 0.98781 0.97934 1.22836 0.99520 0.96145 0.96811 1.22593 0.95446 0.89656 0.94459 1.48663 1.15925 1.15308 1.52709 1.17505 0.80388 0.86577 0.78218 1.90845 1.66865 1.39542 1.46917 1.22637 0.95764 0.94679 0.95745 1.72823 1.23272 0.96363 1.16776 1.72606 1.09653 1.09250 1.21587 1.25580 0.90862 1.01411 0.88117 1.19194 0.98746 0.92590 0.99550 1.21562 0.92761 1.02172 0.92382 1.21653 0.99751 0.91573 0.97943 1.21562 0.92755 0.98616 0.96521 1.20979 0.99022 0.98043 0.96251 1.18757 0.95538 0.96774 0.96977 0.95818 0.96980 0.95303 0.93889 0.96297 0.92644 0.91545 0.90468 0.90124 0.86468 0.90129 0.90129 0.75131 0.79156 0.80301 0.82382 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.81 8.18 127.77 1.05 9.86 16 2 N -0.61 -32.94 2.78 -726.91 -2.02 -34.96 16 3 C -0.27 -16.30 9.59 84.03 0.81 -15.49 16 4 H 0.04 2.82 7.84 -2.91 -0.02 2.80 16 5 C -0.03 -1.88 5.22 84.86 0.44 -1.44 16 6 N -0.92 -54.52 10.88 21.65 0.24 -54.28 16 7 Si 0.96 47.51 29.56 68.60 2.03 49.54 16 8 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 9 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 10 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 11 C 0.15 7.36 5.15 86.38 0.44 7.80 16 12 C 0.13 5.40 3.06 45.34 0.14 5.54 16 13 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 14 C -0.10 -3.52 5.82 31.78 0.18 -3.34 16 15 C -0.12 -2.77 7.10 32.06 0.23 -2.54 16 16 C 0.10 2.67 6.66 86.93 0.58 3.25 16 17 N -0.59 -21.73 3.06 -790.93 -2.42 -24.16 16 18 C 0.59 23.64 6.11 86.81 0.53 24.17 16 19 O -0.56 -27.89 16.23 -3.85 -0.06 -27.95 16 20 C 0.07 2.39 5.60 42.44 0.24 2.63 16 21 N -0.26 -8.76 11.39 -47.73 -0.54 -9.30 16 22 N -0.30 -8.19 11.42 -56.15 -0.64 -8.83 16 23 C 0.11 1.91 11.20 85.23 0.95 2.87 16 24 C -0.09 -1.62 5.75 -21.31 -0.12 -1.74 16 25 C -0.07 -0.53 9.84 22.29 0.22 -0.31 16 26 C -0.09 -0.65 9.95 22.08 0.22 -0.43 16 27 C -0.08 -1.03 9.95 22.11 0.22 -0.81 16 28 C -0.12 -2.89 9.45 22.22 0.21 -2.68 16 29 C -0.07 -1.91 5.77 -21.13 -0.12 -2.03 16 30 H 0.02 1.24 7.24 -2.38 -0.02 1.22 16 31 H 0.01 0.63 7.66 -2.39 -0.02 0.61 16 32 H 0.03 1.24 7.80 -2.39 -0.02 1.22 16 33 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 34 H 0.02 1.02 6.78 -2.39 -0.02 1.01 16 35 H 0.06 2.45 7.67 -2.38 -0.02 2.43 16 36 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.08 2.60 7.42 -2.38 -0.02 2.58 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 39 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.08 1.88 7.76 -2.39 -0.02 1.86 16 42 H 0.23 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.19 -0.34 8.06 -2.91 -0.02 -0.36 16 44 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 45 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 46 H 0.11 3.16 7.33 -2.91 -0.02 3.14 16 Total: -1.00 -84.58 379.77 3.78 -80.80 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 0.99 Total: 3.85 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.22 Total: 25.29 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -5.39 Total: -131.53 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.06 Total: -27.95 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -84.58 3.78 -80.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505439134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.749 kcal (2) G-P(sol) polarization free energy of solvation -84.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds