Wall clock time and date at job start Sat Apr 11 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00322 * 2 1 4 4 H 1.48502 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46967 * 300.00226 * 3 2 1 6 6 H 1.48495 * 109.47245 * 60.00264 * 3 2 1 7 7 C 1.38817 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00367 * 157.65579 * 7 2 1 9 9 N 1.36941 * 119.99688 * 337.64833 * 7 2 1 10 10 C 1.46499 * 120.00037 * 326.15459 * 9 7 2 11 11 C 1.52997 * 109.47066 * 264.43321 * 10 9 7 12 12 O 1.42902 * 109.47195 * 65.00308 * 11 10 9 13 13 C 1.46498 * 119.99783 * 146.14916 * 9 7 2 14 14 C 1.53032 * 109.46067 * 60.07207 * 13 9 7 15 15 C 1.53188 * 109.31546 * 178.61059 * 14 13 9 16 16 N 1.46931 * 108.77416 * 54.63831 * 15 14 13 17 17 C 1.34775 * 120.63596 * 126.37078 * 16 15 14 18 18 O 1.21275 * 120.00429 * 180.02562 * 17 16 15 19 19 C 1.50706 * 119.99469 * 0.02562 * 17 16 15 20 20 C 1.53002 * 109.46792 * 180.02562 * 19 17 16 21 21 H 1.09005 * 110.62299 * 51.91174 * 20 19 17 22 22 C 1.54358 * 110.70252 * 288.62729 * 20 19 17 23 23 O 1.45953 * 105.07064 * 223.79143 * 22 20 19 24 24 C 1.34568 * 108.39858 * 32.43844 * 23 22 20 25 25 O 1.20817 * 125.94155 * 146.64253 * 24 23 22 26 26 C 1.51510 * 108.11028 * 326.66603 * 24 23 22 27 27 C 1.46926 * 118.73316 * 306.39003 * 16 15 14 28 28 C 1.53047 * 109.46154 * 300.00143 * 13 9 7 29 29 H 0.97008 * 119.99745 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47416 * 24.43580 * 10 9 7 31 31 H 1.08999 * 109.47291 * 144.43663 * 10 9 7 32 32 H 1.09006 * 109.47283 * 184.99981 * 11 10 9 33 33 H 1.09002 * 109.47273 * 305.00051 * 11 10 9 34 34 H 0.96690 * 114.00252 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.45566 * 180.02562 * 13 9 7 36 36 H 1.09004 * 109.50119 * 298.56663 * 14 13 9 37 37 H 1.09007 * 109.49986 * 58.65825 * 14 13 9 38 38 H 1.09003 * 109.59163 * 294.85027 * 15 14 13 39 39 H 1.09000 * 109.70798 * 174.49005 * 15 14 13 40 40 H 1.08995 * 109.47307 * 300.00080 * 19 17 16 41 41 H 1.09001 * 109.47268 * 60.00467 * 19 17 16 42 42 H 1.08999 * 110.32748 * 342.68908 * 22 20 19 43 43 H 1.09004 * 110.32736 * 104.89487 * 22 20 19 44 44 H 1.08997 * 110.40412 * 261.59349 * 26 24 23 45 45 H 1.08998 * 110.40250 * 139.16742 * 26 24 23 46 46 H 1.09001 * 109.59239 * 293.81879 * 27 16 15 47 47 H 1.09007 * 109.58262 * 173.39622 * 27 16 15 48 48 H 1.09002 * 109.49820 * 301.33777 * 28 13 9 49 49 H 1.09002 * 109.49229 * 61.39996 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0294 -1.2372 -0.3561 9 7 1.4027 -2.3437 0.4500 10 6 0.4321 -2.2737 1.5451 11 6 1.1352 -2.5764 2.8698 12 8 2.0919 -1.5515 3.1464 13 6 1.7231 -3.6350 -0.1633 14 6 3.2170 -3.9220 0.0038 15 6 3.5419 -5.2884 -0.6079 16 7 3.0764 -5.3054 -2.0014 17 6 3.9166 -5.6354 -3.0022 18 8 3.5204 -5.6453 -4.1484 19 6 5.3487 -5.9920 -2.6969 20 6 6.0806 -6.3228 -3.9992 21 1 5.9452 -5.5246 -4.7291 22 6 5.5989 -7.6746 -4.5677 23 8 6.8149 -8.3660 -4.9844 24 6 7.8124 -8.0080 -4.1551 25 8 8.7315 -8.7105 -3.8068 26 6 7.5819 -6.5710 -3.7338 27 6 1.6775 -4.9555 -2.2831 28 6 1.3735 -3.5929 -1.6527 29 1 -0.4850 0.8401 0.0004 30 1 -0.0007 -1.2741 1.5837 31 1 -0.3581 -3.0056 1.3777 32 1 0.3985 -2.6119 3.6724 33 1 1.6432 -3.5383 2.8001 34 1 2.5770 -1.6790 3.9731 35 1 1.1459 -4.4212 0.3232 36 1 3.7949 -3.1496 -0.5036 37 1 3.4698 -3.9287 1.0641 38 1 3.0350 -6.0713 -0.0437 39 1 4.6184 -5.4569 -0.5803 40 1 5.8375 -5.1481 -2.2101 41 1 5.3744 -6.8579 -2.0353 42 1 5.0831 -8.2473 -3.7969 43 1 4.9430 -7.5135 -5.4232 44 1 8.1909 -5.8963 -4.3355 45 1 7.8066 -6.4448 -2.6748 46 1 1.0185 -5.7112 -1.8556 47 1 1.5243 -4.9017 -3.3611 48 1 0.3141 -3.3653 -1.7715 49 1 1.9683 -2.8230 -2.1444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566133330.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:41 Heat of formation + Delta-G solvation = -164.296317 kcal Electronic energy + Delta-G solvation = -30924.406610 eV Core-core repulsion = 26658.486834 eV Total energy + Delta-G solvation = -4265.919776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.09517 -41.02949 -39.14544 -38.55438 -37.60910 -36.19229 -35.24546 -33.76259 -32.29485 -31.80404 -29.93232 -29.33355 -28.17170 -26.40539 -24.75270 -24.05925 -22.67820 -22.30213 -22.06469 -21.30866 -19.91031 -18.60313 -18.15732 -18.10559 -17.75022 -17.58849 -17.37770 -16.78652 -16.61668 -16.41180 -16.03218 -15.57031 -15.21336 -15.02314 -14.93483 -14.62291 -14.56168 -14.40260 -14.05654 -14.00542 -13.61226 -13.46526 -13.25853 -13.06792 -12.97777 -12.86294 -12.69856 -12.54158 -12.31843 -12.28698 -12.20952 -12.00773 -11.78758 -11.59627 -11.52743 -11.44669 -11.28808 -11.08327 -10.71855 -10.57793 -10.35324 -9.55047 -8.46609 -7.72601 -5.24323 0.85429 1.44480 1.49214 1.55824 1.69419 2.08997 2.38705 2.58192 3.02803 3.25143 3.38433 3.56335 3.59661 3.66026 3.86768 3.92477 4.05673 4.23476 4.25182 4.31508 4.40840 4.48035 4.51956 4.54563 4.61072 4.64972 4.67872 4.71285 4.78631 4.85563 4.87403 4.91153 4.93654 4.98114 5.11737 5.13905 5.17796 5.27763 5.52076 5.65049 5.68037 5.72172 5.78606 5.90058 6.34575 6.54194 6.56038 7.23631 7.24832 7.31396 8.02357 8.47977 9.25438 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002574 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.227268 B =10873.367242 C =11037.737412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.041 4.041 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.301 1.301 6 H -0.298 1.298 7 C -0.213 4.213 8 H 0.049 0.951 9 N -0.585 5.585 10 C 0.133 3.867 11 C 0.070 3.930 12 O -0.576 6.576 13 C 0.171 3.829 14 C -0.130 4.130 15 C 0.113 3.887 16 N -0.607 5.607 17 C 0.507 3.493 18 O -0.584 6.584 19 C -0.129 4.129 20 C -0.099 4.099 21 H 0.103 0.897 22 C 0.063 3.937 23 O -0.376 6.376 24 C 0.484 3.516 25 O -0.496 6.496 26 C -0.168 4.168 27 C 0.123 3.877 28 C -0.123 4.123 29 H 0.243 0.757 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.375 0.625 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.682 -15.095 0.768 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.236 4.236 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.229 1.229 6 H -0.225 1.225 7 C -0.344 4.344 8 H 0.067 0.933 9 N -0.304 5.304 10 C 0.007 3.993 11 C -0.009 4.009 12 O -0.381 6.381 13 C 0.064 3.936 14 C -0.170 4.170 15 C -0.009 4.009 16 N -0.339 5.339 17 C 0.297 3.703 18 O -0.465 6.465 19 C -0.169 4.169 20 C -0.118 4.118 21 H 0.122 0.878 22 C -0.011 4.011 23 O -0.294 6.294 24 C 0.327 3.673 25 O -0.382 6.382 26 C -0.206 4.206 27 C 0.000 4.000 28 C -0.163 4.163 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.221 0.779 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.562 -15.221 -0.401 17.980 hybrid contribution -0.099 1.426 0.407 1.486 sum 9.463 -13.795 0.006 16.729 Atomic orbital electron populations 1.70089 1.06441 1.25007 1.55543 1.25458 0.95421 1.00645 1.02102 0.85606 0.79152 0.81983 0.76011 1.19594 1.22878 1.22548 1.18874 0.93561 0.86679 1.35312 0.93317 1.43953 1.48513 1.02456 1.35505 1.21017 0.90693 1.02038 0.85593 1.22854 0.90757 0.89712 0.97606 1.86771 1.56170 1.50031 1.45161 1.20556 0.94642 0.87485 0.90882 1.22188 0.97449 0.96501 1.00868 1.21998 1.02048 0.97049 0.79829 1.48259 1.10867 1.66631 1.08156 1.21205 0.88835 0.76018 0.84253 1.90673 1.78775 1.55154 1.21856 1.21906 0.90159 1.06255 0.98535 1.22101 0.93111 0.98383 0.98244 0.87848 1.24318 0.82971 0.91233 1.02546 1.87276 1.22079 1.68787 1.51295 1.23902 0.80080 0.89919 0.73440 1.90684 1.33294 1.62095 1.52107 1.23019 0.97222 0.92859 1.07472 1.21478 0.82160 0.95675 1.00708 1.22127 0.99938 0.95800 0.98430 0.94744 0.91644 0.93881 0.94056 0.93675 0.77910 0.91679 0.93950 0.90795 0.89165 0.86650 0.85395 0.85440 0.88790 0.86897 0.84626 0.84383 0.89998 0.91078 0.93726 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 11.34 21.65 0.25 -53.34 16 2 C -0.04 -2.25 4.91 84.86 0.42 -1.84 16 3 Si 0.94 45.75 29.61 68.60 2.03 47.78 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 7 C -0.21 -10.99 8.06 84.03 0.68 -10.32 16 8 H 0.05 2.57 6.87 -2.91 -0.02 2.55 16 9 N -0.58 -25.85 2.35 -677.90 -1.59 -27.44 16 10 C 0.13 5.75 5.57 86.38 0.48 6.23 16 11 C 0.07 2.40 7.39 71.98 0.53 2.93 16 12 O -0.58 -21.63 13.40 -148.98 -2.00 -23.62 16 13 C 0.17 5.82 2.59 45.02 0.12 5.94 16 14 C -0.13 -3.52 5.30 30.67 0.16 -3.35 16 15 C 0.11 1.91 6.34 86.36 0.55 2.46 16 16 N -0.61 -13.37 2.97 -818.90 -2.43 -15.81 16 17 C 0.51 10.65 7.53 87.66 0.66 11.31 16 18 O -0.58 -16.58 14.68 -3.02 -0.04 -16.62 16 19 C -0.13 -1.40 3.25 29.85 0.10 -1.31 16 20 C -0.10 -1.20 2.75 -9.83 -0.03 -1.23 16 21 H 0.10 1.48 7.89 -2.38 -0.02 1.46 16 22 C 0.06 0.94 6.61 72.44 0.48 1.42 16 23 O -0.38 -7.63 11.17 -55.13 -0.62 -8.25 16 24 C 0.48 9.27 8.50 71.49 0.61 9.88 16 25 O -0.50 -13.26 18.00 21.58 0.39 -12.87 16 26 C -0.17 -1.68 6.61 30.60 0.20 -1.47 16 27 C 0.12 3.34 6.43 86.36 0.56 3.90 16 28 C -0.12 -4.38 5.31 30.67 0.16 -4.21 16 29 H 0.24 13.92 8.31 -92.70 -0.77 13.15 16 30 H 0.07 3.47 5.34 -2.39 -0.01 3.46 16 31 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.37 9.53 9.12 -74.06 -0.68 8.85 16 35 H 0.07 1.99 7.87 -2.39 -0.02 1.97 16 36 H 0.04 1.38 7.03 -2.38 -0.02 1.37 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.14 5.93 -2.39 -0.01 1.12 16 40 H 0.13 0.97 7.69 -2.39 -0.02 0.95 16 41 H 0.13 0.70 7.76 -2.39 -0.02 0.68 16 42 H 0.09 1.17 7.69 -2.39 -0.02 1.15 16 43 H 0.11 1.85 8.07 -2.38 -0.02 1.83 16 44 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.14 0.76 7.74 -2.39 -0.02 0.74 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.07 2.15 7.01 -2.38 -0.02 2.14 16 48 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 Total: -1.00 -77.01 389.05 1.95 -75.06 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.29 Total: 14.75 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 5.67 Total: 20.35 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -3.78 Total: -96.58 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -2.27 Total: -61.37 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -77.01 1.95 -75.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566133330.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.235 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds