Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99908 * 2 1 4 4 H 1.48503 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47341 * 300.00324 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00237 * 3 2 1 7 7 C 1.38810 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99907 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.51206 * 60.09487 * 11 10 9 13 13 C 1.53704 * 109.48585 * 180.36472 * 11 10 9 14 14 N 1.47156 * 108.16480 * 172.40091 * 13 11 10 15 15 C 1.34766 * 120.98654 * 129.42802 * 14 13 11 16 16 O 1.21286 * 119.99986 * 359.72050 * 15 14 13 17 17 C 1.50699 * 120.00251 * 179.71649 * 15 14 13 18 18 H 1.08999 * 109.89254 * 304.61002 * 17 15 14 19 19 O 1.43557 * 109.90498 * 183.54667 * 17 15 14 20 20 C 1.44092 * 109.78803 * 240.27215 * 19 17 15 21 21 C 1.54227 * 104.24511 * 335.30005 * 20 19 17 22 22 H 1.08999 * 109.92918 * 282.48601 * 21 20 19 23 23 C 1.51076 * 112.28356 * 159.80122 * 21 20 19 24 24 O 1.42671 * 111.70365 * 295.79889 * 23 21 20 25 25 C 1.43245 * 112.60486 * 299.71404 * 24 23 21 26 26 C 1.52720 * 108.31957 * 65.30114 * 25 24 23 27 27 C 1.53114 * 110.54265 * 299.90251 * 26 25 24 28 28 H 1.09000 * 112.38550 * 284.23299 * 27 26 25 29 29 C 1.47161 * 118.03059 * 309.15378 * 14 13 11 30 30 C 1.53297 * 108.38096 * 50.78682 * 29 14 13 31 31 O 1.42959 * 109.22210 * 307.69498 * 30 29 14 32 32 H 0.96996 * 120.00139 * 0.02562 * 1 2 3 33 33 H 0.96996 * 119.99685 * 359.97438 * 9 7 2 34 34 H 1.09004 * 109.47102 * 59.99106 * 10 9 7 35 35 H 1.08998 * 109.46990 * 299.99944 * 10 9 7 36 36 H 1.08997 * 109.84374 * 52.71580 * 13 11 10 37 37 H 1.09004 * 109.74564 * 292.02172 * 13 11 10 38 38 H 1.09000 * 110.47799 * 216.61158 * 20 19 17 39 39 H 1.08997 * 110.59046 * 94.04770 * 20 19 17 40 40 H 1.08997 * 109.03558 * 175.21938 * 23 21 20 41 41 H 1.09003 * 109.03007 * 56.36458 * 23 21 20 42 42 H 1.09000 * 109.68899 * 305.59361 * 25 24 23 43 43 H 1.09000 * 109.69137 * 185.00865 * 25 24 23 44 44 H 1.09002 * 109.25680 * 60.16838 * 26 25 24 45 45 H 1.08998 * 109.25312 * 179.64026 * 26 25 24 46 46 H 1.08993 * 109.67894 * 170.50752 * 29 14 13 47 47 H 1.08998 * 109.67964 * 291.06707 * 29 14 13 48 48 H 1.08994 * 109.51624 * 67.62409 * 30 29 14 49 49 H 1.08999 * 109.50791 * 187.77489 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 6 1.0640 -4.8197 -0.0031 12 1 0.4378 -4.7630 -0.8934 13 6 1.8322 -6.1510 0.0049 14 7 0.8603 -7.2404 0.1893 15 6 0.8487 -8.3068 -0.6348 16 8 1.6440 -8.3762 -1.5478 17 6 -0.1523 -9.4129 -0.4217 18 1 -0.0700 -9.7968 0.5951 19 8 0.0805 -10.4709 -1.3637 20 6 -1.0885 -10.6587 -2.1850 21 6 -2.2488 -10.1230 -1.3218 22 1 -2.5143 -10.8559 -0.5600 23 6 -3.4651 -9.7765 -2.1483 24 8 -3.2004 -8.7058 -3.0534 25 6 -2.8095 -7.5019 -2.3828 26 6 -1.4695 -7.7498 -1.6934 27 6 -1.5921 -8.8848 -0.6730 28 1 -2.1012 -8.5706 0.2382 29 6 -0.0947 -7.1340 1.3038 30 6 -0.7656 -5.7573 1.2358 31 8 0.2421 -4.7457 1.1643 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0016 34 1 2.6850 -3.7152 0.8871 35 1 2.6848 -3.7137 -0.8928 36 1 2.5514 -6.1582 0.8239 37 1 2.3537 -6.2810 -0.9434 38 1 -1.2338 -11.7163 -2.4052 39 1 -1.0042 -10.0860 -3.1085 40 1 -4.2770 -9.4860 -1.4816 41 1 -3.7706 -10.6550 -2.7167 42 1 -3.5611 -7.2348 -1.6398 43 1 -2.7059 -6.6947 -3.1079 44 1 -0.7243 -8.0184 -2.4421 45 1 -1.1542 -6.8398 -1.1828 46 1 -0.8499 -7.9150 1.2160 47 1 0.4338 -7.2383 2.2513 48 1 -1.3985 -5.7040 0.3500 49 1 -1.3729 -5.6038 2.1278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570147703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = -135.301056 kcal Electronic energy + Delta-G solvation = -32079.810967 eV Core-core repulsion = 27815.148519 eV Total energy + Delta-G solvation = -4264.662447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78424 -39.88430 -38.46801 -37.57233 -35.25268 -34.44823 -33.50428 -32.45205 -32.02429 -30.29644 -29.48925 -27.99461 -25.95352 -25.62698 -23.93384 -23.71879 -23.44556 -22.07880 -20.85746 -20.11397 -19.26652 -17.87933 -17.30030 -16.96034 -16.76174 -16.56168 -16.30244 -15.89498 -15.67558 -15.38834 -15.18279 -15.02644 -14.51239 -14.46953 -14.16278 -13.98265 -13.55932 -13.22837 -13.17074 -13.14509 -12.76006 -12.54353 -12.51181 -12.45854 -12.22796 -11.89461 -11.65805 -11.42741 -11.13828 -11.02898 -10.90575 -10.81611 -10.69193 -10.50663 -10.42772 -10.05026 -9.95393 -9.91291 -9.72068 -9.45664 -8.87763 -8.58249 -6.89858 -5.73858 -3.02400 2.37599 2.55628 3.42185 3.45180 3.49286 3.50781 3.53034 3.68389 3.86607 3.98227 4.14361 4.42116 4.47729 4.55690 4.56113 4.63381 4.66827 4.79489 4.85362 4.90301 4.96828 5.04820 5.07408 5.11026 5.13622 5.18663 5.24700 5.34261 5.37235 5.45450 5.53269 5.58017 5.59136 5.60547 5.71272 5.83117 5.86653 5.94446 6.21367 6.25572 6.46340 6.54088 6.67189 6.72856 7.16196 7.39764 7.72089 7.99041 8.44349 9.56351 10.13032 10.49139 11.48987 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002804 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.907923 B = 9984.876094 C =10641.080799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.075 3.925 12 H 0.062 0.938 13 C 0.085 3.915 14 N -0.612 5.612 15 C 0.510 3.490 16 O -0.521 6.521 17 C 0.068 3.932 18 H 0.104 0.896 19 O -0.350 6.350 20 C 0.056 3.944 21 C -0.155 4.155 22 H 0.099 0.901 23 C 0.071 3.929 24 O -0.373 6.373 25 C 0.061 3.939 26 C -0.169 4.169 27 C -0.108 4.108 28 H 0.110 0.890 29 C 0.064 3.936 30 C 0.045 3.955 31 O -0.354 6.354 32 H 0.254 0.746 33 H 0.387 0.613 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 -24.513 1.030 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.080 0.920 13 C -0.037 4.037 14 N -0.349 5.349 15 C 0.298 3.702 16 O -0.395 6.395 17 C 0.007 3.993 18 H 0.121 0.879 19 O -0.268 6.268 20 C -0.020 4.020 21 C -0.174 4.174 22 H 0.117 0.883 23 C -0.006 4.006 24 O -0.291 6.291 25 C -0.016 4.016 26 C -0.206 4.206 27 C -0.126 4.126 28 H 0.128 0.872 29 C -0.060 4.060 30 C -0.033 4.033 31 O -0.272 6.272 32 H 0.064 0.936 33 H 0.221 0.779 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.263 -24.453 0.425 25.814 hybrid contribution -0.033 0.830 0.377 0.912 sum -8.296 -23.622 0.802 25.050 Atomic orbital electron populations 1.69683 1.05100 1.25435 1.57817 1.24737 0.95533 0.97662 1.03050 0.86111 0.78799 0.84103 0.77144 1.20542 1.21903 1.21881 1.19273 0.91056 0.84071 1.42545 0.91099 1.42209 1.06036 0.99442 1.89331 1.20630 0.92375 0.84693 0.98843 1.22877 0.92908 0.94256 0.88339 0.91954 1.22442 0.91486 0.85485 1.04297 1.48150 1.35354 1.20860 1.30506 1.20735 0.85008 0.82641 0.81849 1.90728 1.40116 1.77767 1.30926 1.22923 0.93190 0.88092 0.95136 0.87861 1.88666 1.37751 1.51193 1.49179 1.23432 0.82753 1.01511 0.94283 1.22854 0.97483 0.97610 0.99461 0.88326 1.21876 0.94468 0.91317 0.92967 1.88157 1.88294 1.20293 1.32369 1.22607 0.94207 0.87490 0.97268 1.22486 0.99999 0.98920 0.99209 1.22848 0.93660 0.96096 1.00010 0.87160 1.22694 0.93073 0.99797 0.90389 1.22950 0.90964 0.86651 1.02754 1.88186 1.45932 1.50341 1.42739 0.93632 0.77856 0.95340 0.94653 0.90299 0.88027 0.89017 0.90877 0.92530 0.88418 0.92437 0.88083 0.89784 0.89611 0.89111 0.90117 0.92822 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.72 5.50 -59.91 -0.33 -19.05 16 10 C 0.16 3.30 5.96 -4.04 -0.02 3.28 16 11 C 0.08 1.24 2.88 -26.37 -0.08 1.16 16 12 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.09 1.21 5.95 -3.32 -0.02 1.19 16 14 N -0.61 -7.39 2.36 -172.02 -0.41 -7.80 16 15 C 0.51 6.80 4.98 -10.99 -0.05 6.75 16 16 O -0.52 -9.20 15.81 -14.02 -0.22 -9.42 16 17 C 0.07 0.68 2.82 -26.61 -0.07 0.61 16 18 H 0.10 0.81 7.81 -51.93 -0.41 0.41 16 19 O -0.35 -4.24 10.61 -54.80 -0.58 -4.83 16 20 C 0.06 0.51 6.72 37.80 0.25 0.76 16 21 C -0.16 -1.01 3.11 -90.19 -0.28 -1.29 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 23 C 0.07 0.45 6.18 36.19 0.22 0.67 16 24 O -0.37 -3.54 10.47 -35.23 -0.37 -3.91 16 25 C 0.06 0.54 6.82 37.01 0.25 0.79 16 26 C -0.17 -1.65 3.87 -26.82 -0.10 -1.75 16 27 C -0.11 -0.81 2.57 -88.52 -0.23 -1.04 16 28 H 0.11 0.56 6.58 -51.93 -0.34 0.22 16 29 C 0.06 0.57 5.75 -3.53 -0.02 0.55 16 30 C 0.04 0.50 6.83 37.31 0.25 0.75 16 31 O -0.35 -5.85 10.13 -35.23 -0.36 -6.21 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.39 10.58 7.54 -40.82 -0.31 10.27 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.53 7.08 -51.93 -0.37 1.17 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.78 7.17 -51.93 -0.37 0.41 16 40 H 0.06 0.29 8.13 -51.93 -0.42 -0.13 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.08 6.24 -51.93 -0.32 0.75 16 45 H 0.09 0.91 4.88 -51.93 -0.25 0.65 16 46 H 0.09 0.55 4.04 -51.93 -0.21 0.34 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.57 6.49 -51.93 -0.34 0.23 16 49 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -35.87 370.37 -8.66 -44.53 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.54 Total: 6.17 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.14 Total: 5.02 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.01 Total: -54.52 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.53 Total: -24.37 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.87 -8.66 -44.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570147703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.768 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds