Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99908 * 2 1 4 4 H 1.48503 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47341 * 300.00324 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00237 * 3 2 1 7 7 C 1.38810 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99907 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.51206 * 60.09487 * 11 10 9 13 13 C 1.53704 * 109.48585 * 180.36472 * 11 10 9 14 14 N 1.47156 * 108.16480 * 172.40091 * 13 11 10 15 15 C 1.34766 * 120.98654 * 129.42802 * 14 13 11 16 16 O 1.21286 * 119.99986 * 359.72050 * 15 14 13 17 17 C 1.50699 * 120.00251 * 179.71649 * 15 14 13 18 18 H 1.08999 * 109.89254 * 304.61002 * 17 15 14 19 19 O 1.43557 * 109.90498 * 183.54667 * 17 15 14 20 20 C 1.44092 * 109.78803 * 240.27215 * 19 17 15 21 21 C 1.54227 * 104.24511 * 335.30005 * 20 19 17 22 22 H 1.08999 * 109.92918 * 282.48601 * 21 20 19 23 23 C 1.51076 * 112.28356 * 159.80122 * 21 20 19 24 24 O 1.42671 * 111.70365 * 295.79889 * 23 21 20 25 25 C 1.43245 * 112.60486 * 299.71404 * 24 23 21 26 26 C 1.52720 * 108.31957 * 65.30114 * 25 24 23 27 27 C 1.53114 * 110.54265 * 299.90251 * 26 25 24 28 28 H 1.09000 * 112.38550 * 284.23299 * 27 26 25 29 29 C 1.47161 * 118.03059 * 309.15378 * 14 13 11 30 30 C 1.53297 * 108.38096 * 50.78682 * 29 14 13 31 31 O 1.42959 * 109.22210 * 307.69498 * 30 29 14 32 32 H 0.96996 * 120.00139 * 0.02562 * 1 2 3 33 33 H 0.96996 * 119.99685 * 359.97438 * 9 7 2 34 34 H 1.09004 * 109.47102 * 59.99106 * 10 9 7 35 35 H 1.08998 * 109.46990 * 299.99944 * 10 9 7 36 36 H 1.08997 * 109.84374 * 52.71580 * 13 11 10 37 37 H 1.09004 * 109.74564 * 292.02172 * 13 11 10 38 38 H 1.09000 * 110.47799 * 216.61158 * 20 19 17 39 39 H 1.08997 * 110.59046 * 94.04770 * 20 19 17 40 40 H 1.08997 * 109.03558 * 175.21938 * 23 21 20 41 41 H 1.09003 * 109.03007 * 56.36458 * 23 21 20 42 42 H 1.09000 * 109.68899 * 305.59361 * 25 24 23 43 43 H 1.09000 * 109.69137 * 185.00865 * 25 24 23 44 44 H 1.09002 * 109.25680 * 60.16838 * 26 25 24 45 45 H 1.08998 * 109.25312 * 179.64026 * 26 25 24 46 46 H 1.08993 * 109.67894 * 170.50752 * 29 14 13 47 47 H 1.08998 * 109.67964 * 291.06707 * 29 14 13 48 48 H 1.08994 * 109.51624 * 67.62409 * 30 29 14 49 49 H 1.08999 * 109.50791 * 187.77489 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 6 1.0640 -4.8197 -0.0031 12 1 0.4378 -4.7630 -0.8934 13 6 1.8322 -6.1510 0.0049 14 7 0.8603 -7.2404 0.1893 15 6 0.8487 -8.3068 -0.6348 16 8 1.6440 -8.3762 -1.5478 17 6 -0.1523 -9.4129 -0.4217 18 1 -0.0700 -9.7968 0.5951 19 8 0.0805 -10.4709 -1.3637 20 6 -1.0885 -10.6587 -2.1850 21 6 -2.2488 -10.1230 -1.3218 22 1 -2.5143 -10.8559 -0.5600 23 6 -3.4651 -9.7765 -2.1483 24 8 -3.2004 -8.7058 -3.0534 25 6 -2.8095 -7.5019 -2.3828 26 6 -1.4695 -7.7498 -1.6934 27 6 -1.5921 -8.8848 -0.6730 28 1 -2.1012 -8.5706 0.2382 29 6 -0.0947 -7.1340 1.3038 30 6 -0.7656 -5.7573 1.2358 31 8 0.2421 -4.7457 1.1643 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0016 34 1 2.6850 -3.7152 0.8871 35 1 2.6848 -3.7137 -0.8928 36 1 2.5514 -6.1582 0.8239 37 1 2.3537 -6.2810 -0.9434 38 1 -1.2338 -11.7163 -2.4052 39 1 -1.0042 -10.0860 -3.1085 40 1 -4.2770 -9.4860 -1.4816 41 1 -3.7706 -10.6550 -2.7167 42 1 -3.5611 -7.2348 -1.6398 43 1 -2.7059 -6.6947 -3.1079 44 1 -0.7243 -8.0184 -2.4421 45 1 -1.1542 -6.8398 -1.1828 46 1 -0.8499 -7.9150 1.2160 47 1 0.4338 -7.2383 2.2513 48 1 -1.3985 -5.7040 0.3500 49 1 -1.3729 -5.6038 2.1278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570147703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = -162.431201 kcal Electronic energy + Delta-G solvation = -32080.987418 eV Core-core repulsion = 27815.148519 eV Total energy + Delta-G solvation = -4265.838899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.57664 -40.83452 -39.48710 -38.42082 -36.73395 -35.89038 -34.34799 -33.83658 -32.89063 -31.87643 -30.33556 -29.18776 -27.21717 -26.46563 -25.04389 -24.60954 -24.57801 -23.41117 -22.16194 -20.77349 -20.18838 -19.24927 -18.65176 -17.93185 -17.68617 -17.49101 -17.20328 -16.95491 -16.52885 -16.40031 -16.29179 -16.06759 -15.89103 -15.54896 -15.27488 -15.03444 -14.77600 -14.47012 -14.42278 -14.15398 -13.89887 -13.80730 -13.45752 -13.22996 -13.12929 -13.05274 -12.82468 -12.67634 -12.52128 -12.27544 -12.15126 -12.02327 -11.88842 -11.79620 -11.59813 -11.26312 -11.22600 -11.16626 -10.97097 -10.60469 -10.38272 -9.65214 -9.01284 -7.94721 -5.23996 1.39665 1.47592 1.48629 1.58565 1.60939 2.55741 2.70454 2.74705 2.92723 3.06067 3.21373 3.39122 3.49388 3.52810 3.72057 3.85338 3.87874 3.92033 3.98216 3.99692 4.06346 4.15994 4.20011 4.30264 4.33783 4.39726 4.44248 4.45842 4.54812 4.61255 4.63703 4.65737 4.68459 4.75216 4.80733 4.86012 4.92775 4.93239 5.04843 5.10287 5.15046 5.21469 5.48193 5.71826 6.16820 6.21195 6.23022 6.28001 6.98979 7.33525 8.06694 8.32308 9.28983 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002804 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.907923 B = 9984.876094 C =10641.080799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.738 5.738 10 C 0.159 3.841 11 C 0.093 3.907 12 H 0.048 0.952 13 C 0.094 3.906 14 N -0.608 5.608 15 C 0.506 3.494 16 O -0.577 6.577 17 C 0.068 3.932 18 H 0.139 0.861 19 O -0.380 6.380 20 C 0.049 3.951 21 C -0.141 4.141 22 H 0.134 0.866 23 C 0.063 3.937 24 O -0.398 6.398 25 C 0.062 3.938 26 C -0.163 4.163 27 C -0.100 4.100 28 H 0.151 0.849 29 C 0.067 3.933 30 C 0.036 3.964 31 O -0.385 6.385 32 H 0.251 0.749 33 H 0.377 0.623 34 H 0.030 0.970 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.095 0.905 48 H 0.057 0.943 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 -26.249 3.173 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.094 0.906 9 N -0.381 5.381 10 C 0.032 3.968 11 C 0.034 3.966 12 H 0.066 0.934 13 C -0.029 4.029 14 N -0.343 5.343 15 C 0.295 3.705 16 O -0.456 6.456 17 C 0.007 3.993 18 H 0.156 0.844 19 O -0.298 6.298 20 C -0.027 4.027 21 C -0.160 4.160 22 H 0.152 0.848 23 C -0.013 4.013 24 O -0.317 6.317 25 C -0.015 4.015 26 C -0.201 4.201 27 C -0.118 4.118 28 H 0.169 0.831 29 C -0.055 4.055 30 C -0.041 4.041 31 O -0.303 6.303 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.147 0.853 47 H 0.114 0.886 48 H 0.075 0.925 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.808 -26.226 2.593 28.119 hybrid contribution 0.448 1.301 -0.326 1.414 sum -9.360 -24.924 2.267 26.720 Atomic orbital electron populations 1.69835 1.06591 1.25996 1.59348 1.25582 0.96461 1.01091 1.03550 0.85050 0.78189 0.79637 0.76720 1.19103 1.21972 1.21837 1.19679 0.91528 0.85270 1.41412 0.90612 1.42374 1.05727 1.00693 1.89320 1.20762 0.93177 0.84171 0.98704 1.22454 0.92207 0.93740 0.88193 0.93393 1.22148 0.91785 0.85223 1.03778 1.48206 1.35228 1.19795 1.31106 1.21535 0.84896 0.83312 0.80760 1.90697 1.42558 1.79057 1.33261 1.23148 0.93216 0.86691 0.96264 0.84426 1.88640 1.39710 1.51547 1.49926 1.23561 0.83266 1.02417 0.93458 1.22871 0.96191 0.97430 0.99490 0.84793 1.22152 0.94956 0.90929 0.93262 1.88134 1.88380 1.21132 1.34034 1.22579 0.94262 0.87287 0.97332 1.22364 0.99369 0.99425 0.98902 1.22992 0.92490 0.95508 1.00838 0.83116 1.22921 0.93282 0.99627 0.89651 1.23312 0.90135 0.86477 1.04202 1.88119 1.47170 1.52902 1.42144 0.93974 0.79136 0.95172 0.94420 0.89464 0.89744 0.87016 0.93975 0.90093 0.87017 0.89986 0.89669 0.93932 0.90735 0.85251 0.88648 0.92527 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -38.98 5.50 -343.45 -1.89 -40.87 16 10 C 0.16 6.61 5.96 86.38 0.51 7.13 16 11 C 0.09 3.14 2.88 30.83 0.09 3.22 16 12 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.09 2.70 5.95 86.49 0.52 3.22 16 14 N -0.61 -14.08 2.36 -816.54 -1.92 -16.01 16 15 C 0.51 13.33 4.98 87.66 0.44 13.76 16 16 O -0.58 -21.45 15.81 15.67 0.25 -21.21 16 17 C 0.07 1.20 2.82 30.68 0.09 1.29 16 18 H 0.14 1.52 7.81 -2.39 -0.02 1.50 16 19 O -0.38 -8.85 10.61 -130.27 -1.38 -10.23 16 20 C 0.05 0.82 6.72 72.40 0.49 1.31 16 21 C -0.14 -1.33 3.11 -10.51 -0.03 -1.36 16 22 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 23 C 0.06 0.60 6.18 71.36 0.44 1.04 16 24 O -0.40 -7.14 10.47 -148.98 -1.56 -8.70 16 25 C 0.06 1.05 6.82 71.89 0.49 1.54 16 26 C -0.16 -3.10 3.87 30.54 0.12 -2.98 16 27 C -0.10 -1.17 2.57 -9.44 -0.02 -1.20 16 28 H 0.15 0.59 6.58 -2.39 -0.02 0.57 16 29 C 0.07 0.98 5.75 86.35 0.50 1.48 16 30 C 0.04 0.70 6.83 72.08 0.49 1.20 16 31 O -0.38 -12.51 10.13 -148.98 -1.51 -14.02 16 32 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.38 21.20 7.54 -92.71 -0.70 20.50 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.08 2.71 7.08 -2.39 -0.02 2.70 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 0.95 7.17 -2.39 -0.02 0.93 16 40 H 0.08 0.43 8.13 -2.39 -0.02 0.41 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.97 8.11 -2.39 -0.02 0.95 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.17 6.24 -2.39 -0.01 1.15 16 45 H 0.07 1.55 4.88 -2.39 -0.01 1.54 16 46 H 0.13 0.89 4.04 -2.39 -0.01 0.88 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.10 6.49 -2.39 -0.02 1.08 16 49 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -82.62 370.37 -0.02 -82.63 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.27 Total: 26.81 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.42 Total: 12.41 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -3.53 Total: -116.53 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -4.20 Total: -54.16 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -82.62 -0.02 -82.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570147703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.798 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds