Wall clock time and date at job start Sat Apr 11 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99988 * 2 1 4 4 O 1.21551 * 119.99941 * 174.75948 * 3 2 1 5 5 C 1.47917 * 120.00357 * 354.74626 * 3 2 1 6 6 C 1.38926 * 119.85056 * 184.76790 * 5 3 2 7 7 C 1.40647 * 117.38832 * 179.75588 * 6 5 3 8 8 C 1.40263 * 122.03613 * 180.22113 * 7 6 5 9 9 C 1.36270 * 119.47671 * 180.29858 * 8 7 6 10 10 C 1.39321 * 120.86968 * 359.97438 * 9 8 7 11 11 C 1.36228 * 121.16216 * 0.02562 * 10 9 8 12 12 C 1.40338 * 119.68031 * 359.97438 * 11 10 9 13 13 N 1.33813 * 121.62658 * 179.97438 * 12 11 10 14 14 N 1.28435 * 121.69127 * 180.02562 * 13 12 11 15 15 C 1.46497 * 119.99822 * 179.97438 * 2 1 3 16 16 H 1.09001 * 109.46998 * 175.03224 * 15 2 1 17 17 C 1.53002 * 109.47495 * 55.02822 * 15 2 1 18 18 N 1.46506 * 109.46518 * 55.00160 * 17 15 2 19 19 C 1.36941 * 119.99519 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00307 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99600 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99776 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99721 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47008 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47086 * 119.99887 * 23 21 19 26 26 H 1.48503 * 109.46854 * 239.99758 * 23 21 19 27 27 C 1.53009 * 109.47127 * 295.03063 * 15 2 1 28 28 C 1.53003 * 117.49763 * 253.58542 * 27 15 2 29 29 C 1.53005 * 117.49750 * 184.92665 * 27 15 2 30 30 H 1.09003 * 109.47295 * 184.91287 * 1 2 3 31 31 H 1.09001 * 109.47238 * 304.91240 * 1 2 3 32 32 H 1.09004 * 109.47275 * 64.91469 * 1 2 3 33 33 H 1.08003 * 121.30514 * 359.97438 * 6 5 3 34 34 H 1.08007 * 120.25934 * 0.32293 * 8 7 6 35 35 H 1.08000 * 119.55923 * 180.02562 * 9 8 7 36 36 H 1.07998 * 119.41750 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.16049 * 179.97438 * 11 10 9 38 38 H 1.08994 * 109.47099 * 295.00282 * 17 15 2 39 39 H 1.08994 * 109.47266 * 174.99532 * 17 15 2 40 40 H 0.97003 * 120.00205 * 359.72589 * 18 17 15 41 41 H 0.97000 * 119.99358 * 180.02562 * 22 21 19 42 42 H 1.08998 * 115.54630 * 39.25518 * 27 15 2 43 43 H 1.09002 * 117.50002 * 359.97438 * 28 27 15 44 44 H 1.08992 * 117.49596 * 145.01913 * 28 27 15 45 45 H 1.08997 * 117.49825 * 214.97589 * 29 27 15 46 46 H 1.09000 * 117.49876 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3505 1.1694 0.0961 5 6 1.4040 2.4455 -0.1173 6 6 2.1061 3.6401 -0.2169 7 6 1.3557 4.8241 -0.3314 8 6 1.9642 6.0830 -0.4423 9 6 1.1863 7.1972 -0.5444 10 6 -0.2036 7.1014 -0.5404 11 6 -0.8267 5.8947 -0.4342 12 6 -0.0604 4.7239 -0.3271 13 7 -0.6318 3.5186 -0.2203 14 7 0.0684 2.4464 -0.1217 15 6 2.1974 -1.2687 0.0006 16 1 3.2657 -1.0715 -0.0885 17 6 1.7364 -2.1244 -1.1811 18 7 1.8878 -1.3631 -2.4236 19 6 1.5357 -1.9284 -3.6201 20 1 1.1469 -2.9356 -3.6479 21 6 1.6796 -1.2072 -4.7975 22 7 2.1539 0.0201 -4.7636 23 14 1.1986 -1.9781 -6.4296 24 1 0.6961 -3.3560 -6.1972 25 1 0.1335 -1.1632 -7.0672 26 1 2.3846 -2.0281 -7.3220 27 6 1.9238 -2.0150 1.3080 28 6 3.0467 -2.0557 2.3465 29 6 2.6915 -3.3157 1.5530 30 1 -0.3634 -1.0239 0.0880 31 1 -0.3634 0.5882 0.8427 32 1 -0.3634 0.4357 -0.9308 33 1 3.1860 3.6586 -0.2103 34 1 3.0409 6.1685 -0.4473 35 1 1.6535 8.1671 -0.6303 36 1 -0.7974 7.9997 -0.6230 37 1 -1.9053 5.8393 -0.4324 38 1 0.6894 -2.3958 -1.0465 39 1 2.3425 -3.0288 -1.2331 40 1 2.2333 -0.4570 -2.3982 41 1 2.2541 0.5241 -5.5863 42 1 0.8995 -1.9581 1.6762 43 1 3.9805 -1.5512 2.0981 44 1 2.7611 -2.0260 3.3979 45 1 2.1724 -4.1143 2.0828 46 1 3.3911 -3.6399 0.7826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571365310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:25 Heat of formation + Delta-G solvation = 105.008323 kcal Electronic energy + Delta-G solvation = -29487.538412 eV Core-core repulsion = 25572.898233 eV Total energy + Delta-G solvation = -3914.640180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45194 -39.74881 -37.97323 -37.36973 -35.21405 -33.98835 -33.76202 -31.91171 -31.08352 -30.54029 -28.23118 -26.50645 -25.38702 -25.00614 -23.93523 -22.60991 -22.38388 -21.53262 -21.03904 -19.22396 -18.80143 -18.17631 -17.10853 -16.77380 -16.36592 -15.98689 -15.64129 -14.88879 -14.84331 -14.71323 -14.53355 -14.41147 -13.87088 -13.74281 -13.50265 -13.18108 -12.96745 -12.73778 -12.52189 -12.42554 -12.25894 -12.07185 -11.84401 -11.47936 -11.40106 -11.03341 -10.96655 -10.83979 -10.81144 -10.67092 -10.30666 -10.08774 -9.81885 -9.73909 -9.64697 -9.58053 -9.51907 -8.84648 -8.60878 -8.17822 -6.87356 -5.71474 -3.00264 -0.18282 0.30628 1.54877 2.34251 3.08547 3.25599 3.45796 3.50914 3.53479 3.81468 3.86554 4.01336 4.15137 4.36258 4.37558 4.54086 4.60557 4.79580 4.83170 4.88306 4.91805 5.09260 5.15907 5.33630 5.46469 5.49519 5.49662 5.60432 5.62913 5.67625 5.77494 5.81719 5.89463 5.96437 6.00205 6.03149 6.05309 6.14310 6.27522 6.28102 6.35968 6.41601 6.51196 6.55964 6.76942 7.00587 7.67554 7.73865 8.32300 8.46084 8.54134 9.57750 10.15687 10.50692 11.51167 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.004047 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.042834 B = 6916.912792 C = 9243.226159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.571 5.571 3 C 0.579 3.421 4 O -0.537 6.537 5 C 0.006 3.994 6 C -0.027 4.027 7 C -0.074 4.074 8 C -0.092 4.092 9 C -0.102 4.102 10 C -0.096 4.096 11 C -0.079 4.079 12 C 0.072 3.928 13 N -0.208 5.208 14 N -0.178 5.178 15 C 0.162 3.838 16 H 0.101 0.899 17 C 0.148 3.852 18 N -0.728 5.728 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.158 4.158 28 C -0.178 4.178 29 C -0.169 4.169 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.384 0.616 41 H 0.253 0.747 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 11.573 15.176 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.300 5.300 3 C 0.364 3.636 4 O -0.414 6.414 5 C -0.127 4.127 6 C -0.057 4.057 7 C -0.083 4.083 8 C -0.110 4.110 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.100 4.100 12 C -0.056 4.056 13 N -0.064 5.064 14 N -0.036 5.036 15 C 0.058 3.942 16 H 0.119 0.881 17 C 0.020 3.980 18 N -0.372 5.372 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.178 4.178 28 C -0.215 4.215 29 C -0.207 4.207 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.218 0.782 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.822 10.518 15.171 18.852 hybrid contribution 0.999 0.766 -1.223 1.755 sum -2.822 11.284 13.948 18.161 Atomic orbital electron populations 1.21928 0.78019 1.01657 1.03011 1.47470 1.07897 1.04776 1.69848 1.17395 0.86285 0.82599 0.77284 1.90767 1.12869 1.86567 1.51165 1.22523 0.92441 0.95479 1.02303 1.22568 1.02520 0.90332 0.90324 1.18807 0.93783 0.95068 1.00623 1.21053 1.00750 0.90606 0.98638 1.21083 0.93873 0.99023 0.98200 1.21066 0.94837 0.97923 0.97784 1.20799 1.00699 0.89922 0.98623 1.20434 0.91437 0.95168 0.98544 1.73903 1.29672 0.94499 1.08315 1.73732 1.04970 1.19565 1.05330 1.21022 0.97906 0.82187 0.93049 0.88140 1.20950 0.98007 0.93559 0.85509 1.42296 1.78144 1.16021 1.00785 1.19254 1.35087 0.97911 0.84511 0.91116 1.24733 1.02115 0.96356 0.97722 1.69696 1.51743 1.10082 1.26489 0.86134 0.77607 0.78215 0.84357 1.20524 1.21964 1.21945 1.22547 0.97389 1.00697 0.97136 1.23000 0.99941 1.01892 0.96653 1.22916 1.03548 0.91054 1.03186 0.91373 0.91487 0.90747 0.81689 0.84226 0.84801 0.84649 0.83817 0.95773 0.95026 0.78221 0.93714 0.87594 0.88625 0.89231 0.88820 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 7.99 59.84 0.48 2.07 16 2 N -0.57 -10.38 2.20 -175.01 -0.38 -10.76 16 3 C 0.58 11.19 7.64 -12.30 -0.09 11.10 16 4 O -0.54 -11.32 15.72 5.32 0.08 -11.24 16 5 C 0.01 0.10 6.74 -82.90 -0.56 -0.45 16 6 C -0.03 -0.40 9.51 -38.42 -0.37 -0.77 16 7 C -0.07 -0.98 5.75 -106.80 -0.61 -1.59 16 8 C -0.09 -0.88 9.81 -39.53 -0.39 -1.27 16 9 C -0.10 -0.78 9.96 -39.89 -0.40 -1.18 16 10 C -0.10 -0.74 9.94 -39.90 -0.40 -1.13 16 11 C -0.08 -0.81 10.00 -39.52 -0.40 -1.21 16 12 C 0.07 0.99 6.69 -84.79 -0.57 0.42 16 13 N -0.21 -3.35 11.55 32.23 0.37 -2.98 16 14 N -0.18 -3.08 7.13 33.24 0.24 -2.84 16 15 C 0.16 2.89 2.30 -67.93 -0.16 2.73 16 16 H 0.10 2.01 6.74 -51.93 -0.35 1.66 16 17 C 0.15 3.06 5.28 -4.04 -0.02 3.04 16 18 N -0.73 -19.11 5.44 -59.91 -0.33 -19.43 16 19 C -0.24 -6.77 9.99 -15.05 -0.15 -6.92 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 23 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 C -0.16 -2.23 5.09 -90.61 -0.46 -2.69 16 28 C -0.18 -2.26 10.18 -26.69 -0.27 -2.53 16 29 C -0.17 -2.09 9.89 -26.69 -0.26 -2.36 16 30 H 0.07 1.02 6.38 -51.93 -0.33 0.69 16 31 H 0.07 1.00 6.92 -51.93 -0.36 0.64 16 32 H 0.07 1.42 7.20 -51.93 -0.37 1.04 16 33 H 0.17 2.22 7.70 -52.48 -0.40 1.81 16 34 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.02 0.49 7.07 -51.93 -0.37 0.13 16 39 H 0.03 0.65 7.81 -51.93 -0.41 0.25 16 40 H 0.38 10.95 7.32 -40.82 -0.30 10.65 16 41 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.11 1.39 7.41 -51.93 -0.38 1.01 16 43 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.10 1.27 7.98 -51.93 -0.41 0.86 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -34.92 383.48 -9.45 -44.37 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.19 Total: 10.84 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -4.72 Total: -3.23 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.62 Total: -64.49 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.92 -9.45 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571365310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.376 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds