Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99988 * 2 1 4 4 O 1.21551 * 119.99941 * 174.75948 * 3 2 1 5 5 C 1.47917 * 120.00357 * 354.74626 * 3 2 1 6 6 C 1.38926 * 119.85056 * 184.76790 * 5 3 2 7 7 C 1.40647 * 117.38832 * 179.75588 * 6 5 3 8 8 C 1.40263 * 122.03613 * 180.22113 * 7 6 5 9 9 C 1.36270 * 119.47671 * 180.29858 * 8 7 6 10 10 C 1.39321 * 120.86968 * 359.97438 * 9 8 7 11 11 C 1.36228 * 121.16216 * 0.02562 * 10 9 8 12 12 C 1.40338 * 119.68031 * 359.97438 * 11 10 9 13 13 N 1.33813 * 121.62658 * 179.97438 * 12 11 10 14 14 N 1.28435 * 121.69127 * 180.02562 * 13 12 11 15 15 C 1.46497 * 119.99822 * 179.97438 * 2 1 3 16 16 H 1.09001 * 109.46998 * 175.03224 * 15 2 1 17 17 C 1.53002 * 109.47495 * 55.02822 * 15 2 1 18 18 N 1.46506 * 109.46518 * 55.00160 * 17 15 2 19 19 C 1.36941 * 119.99519 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00307 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99600 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99776 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99721 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47008 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47086 * 119.99887 * 23 21 19 26 26 H 1.48503 * 109.46854 * 239.99758 * 23 21 19 27 27 C 1.53009 * 109.47127 * 295.03063 * 15 2 1 28 28 C 1.53003 * 117.49763 * 253.58542 * 27 15 2 29 29 C 1.53005 * 117.49750 * 184.92665 * 27 15 2 30 30 H 1.09003 * 109.47295 * 184.91287 * 1 2 3 31 31 H 1.09001 * 109.47238 * 304.91240 * 1 2 3 32 32 H 1.09004 * 109.47275 * 64.91469 * 1 2 3 33 33 H 1.08003 * 121.30514 * 359.97438 * 6 5 3 34 34 H 1.08007 * 120.25934 * 0.32293 * 8 7 6 35 35 H 1.08000 * 119.55923 * 180.02562 * 9 8 7 36 36 H 1.07998 * 119.41750 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.16049 * 179.97438 * 11 10 9 38 38 H 1.08994 * 109.47099 * 295.00282 * 17 15 2 39 39 H 1.08994 * 109.47266 * 174.99532 * 17 15 2 40 40 H 0.97003 * 120.00205 * 359.72589 * 18 17 15 41 41 H 0.97000 * 119.99358 * 180.02562 * 22 21 19 42 42 H 1.08998 * 115.54630 * 39.25518 * 27 15 2 43 43 H 1.09002 * 117.50002 * 359.97438 * 28 27 15 44 44 H 1.08992 * 117.49596 * 145.01913 * 28 27 15 45 45 H 1.08997 * 117.49825 * 214.97589 * 29 27 15 46 46 H 1.09000 * 117.49876 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3505 1.1694 0.0961 5 6 1.4040 2.4455 -0.1173 6 6 2.1061 3.6401 -0.2169 7 6 1.3557 4.8241 -0.3314 8 6 1.9642 6.0830 -0.4423 9 6 1.1863 7.1972 -0.5444 10 6 -0.2036 7.1014 -0.5404 11 6 -0.8267 5.8947 -0.4342 12 6 -0.0604 4.7239 -0.3271 13 7 -0.6318 3.5186 -0.2203 14 7 0.0684 2.4464 -0.1217 15 6 2.1974 -1.2687 0.0006 16 1 3.2657 -1.0715 -0.0885 17 6 1.7364 -2.1244 -1.1811 18 7 1.8878 -1.3631 -2.4236 19 6 1.5357 -1.9284 -3.6201 20 1 1.1469 -2.9356 -3.6479 21 6 1.6796 -1.2072 -4.7975 22 7 2.1539 0.0201 -4.7636 23 14 1.1986 -1.9781 -6.4296 24 1 0.6961 -3.3560 -6.1972 25 1 0.1335 -1.1632 -7.0672 26 1 2.3846 -2.0281 -7.3220 27 6 1.9238 -2.0150 1.3080 28 6 3.0467 -2.0557 2.3465 29 6 2.6915 -3.3157 1.5530 30 1 -0.3634 -1.0239 0.0880 31 1 -0.3634 0.5882 0.8427 32 1 -0.3634 0.4357 -0.9308 33 1 3.1860 3.6586 -0.2103 34 1 3.0409 6.1685 -0.4473 35 1 1.6535 8.1671 -0.6303 36 1 -0.7974 7.9997 -0.6230 37 1 -1.9053 5.8393 -0.4324 38 1 0.6894 -2.3958 -1.0465 39 1 2.3425 -3.0288 -1.2331 40 1 2.2333 -0.4570 -2.3982 41 1 2.2541 0.5241 -5.5863 42 1 0.8995 -1.9581 1.6762 43 1 3.9805 -1.5512 2.0981 44 1 2.7611 -2.0260 3.3979 45 1 2.1724 -4.1143 2.0828 46 1 3.3911 -3.6399 0.7826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571365310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 83.023999 kcal Electronic energy + Delta-G solvation = -29488.491724 eV Core-core repulsion = 25572.898233 eV Total energy + Delta-G solvation = -3915.593492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.53101 -41.09438 -39.01165 -38.58708 -36.68450 -35.82086 -34.81770 -33.35242 -32.59606 -31.53435 -29.87563 -27.91433 -26.58583 -26.26658 -25.55444 -23.77584 -23.46029 -22.91174 -22.19662 -20.63128 -19.77882 -19.37000 -19.16849 -17.93852 -17.62406 -17.04417 -16.94432 -16.63860 -16.12806 -15.74093 -15.68154 -15.53228 -15.30321 -15.20976 -14.89761 -14.64738 -14.51175 -13.98014 -13.85496 -13.68352 -13.38909 -13.17239 -13.01432 -12.91621 -12.86211 -12.75068 -12.41358 -12.24749 -12.08747 -12.06307 -11.89530 -11.81304 -11.39457 -11.09906 -10.97887 -10.93264 -10.81890 -10.43493 -9.73320 -9.40514 -9.03591 -7.96988 -5.26785 -1.16270 -0.72484 0.64163 1.25064 1.43173 1.44850 1.55056 1.74998 2.08658 2.52269 2.67347 2.82664 2.92547 3.20218 3.26813 3.37069 3.42778 3.56316 3.73394 3.77180 3.95939 4.07247 4.11202 4.12371 4.17835 4.26298 4.33283 4.40464 4.44531 4.52350 4.59734 4.68327 4.77790 4.79768 4.89089 4.91254 5.03121 5.04374 5.07400 5.10560 5.24529 5.26644 5.29923 5.31475 5.45358 5.56285 5.71551 6.21923 6.23998 6.89155 7.29046 7.37517 8.03611 8.27556 9.26933 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.004047 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.042834 B = 6916.912792 C = 9243.226159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.572 5.572 3 C 0.571 3.429 4 O -0.569 6.569 5 C -0.028 4.028 6 C -0.034 4.034 7 C -0.085 4.085 8 C -0.104 4.104 9 C -0.082 4.082 10 C -0.071 4.071 11 C -0.099 4.099 12 C 0.052 3.948 13 N -0.229 5.229 14 N -0.199 5.199 15 C 0.170 3.830 16 H 0.072 0.928 17 C 0.149 3.851 18 N -0.742 5.742 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.078 4.078 22 N -0.973 5.973 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.295 1.295 26 H -0.294 1.294 27 C -0.170 4.170 28 C -0.171 4.171 29 C -0.155 4.155 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.368 0.632 41 H 0.248 0.752 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 13.087 15.910 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.300 5.300 3 C 0.357 3.643 4 O -0.449 6.449 5 C -0.161 4.161 6 C -0.064 4.064 7 C -0.093 4.093 8 C -0.123 4.123 9 C -0.101 4.101 10 C -0.091 4.091 11 C -0.120 4.120 12 C -0.075 4.075 13 N -0.085 5.085 14 N -0.057 5.057 15 C 0.066 3.934 16 H 0.090 0.910 17 C 0.022 3.978 18 N -0.384 5.384 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.270 4.270 22 N -0.624 5.624 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.222 1.222 26 H -0.222 1.222 27 C -0.189 4.189 28 C -0.208 4.208 29 C -0.193 4.193 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.188 0.812 34 H 0.179 0.821 35 H 0.196 0.804 36 H 0.197 0.803 37 H 0.176 0.824 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.199 0.801 41 H 0.057 0.943 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.140 0.860 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.956 11.971 15.942 20.543 hybrid contribution 1.325 0.543 -1.424 2.019 sum -3.631 12.514 14.519 19.509 Atomic orbital electron populations 1.21858 0.77080 1.02472 1.02077 1.47577 1.08464 1.04675 1.69329 1.17793 0.86184 0.83594 0.76683 1.90714 1.14073 1.87209 1.52877 1.22357 0.92981 0.95334 1.05437 1.22740 1.02904 0.90604 0.90141 1.19088 0.93618 0.95868 1.00730 1.21405 1.02322 0.89632 0.98943 1.21675 0.93820 1.00048 0.94583 1.21650 0.95369 0.98282 0.93803 1.21116 1.01504 0.89598 0.99772 1.20923 0.92367 0.95427 0.98825 1.73752 1.30134 0.95376 1.09235 1.73610 1.04768 1.20533 1.06741 1.20846 0.96160 0.82168 0.94184 0.90974 1.21118 0.98621 0.93623 0.84476 1.42513 1.77981 1.15724 1.02187 1.19703 1.33693 0.98166 0.85503 0.90101 1.25613 1.02982 0.96929 1.01467 1.69887 1.53804 1.11777 1.26962 0.85032 0.76830 0.78075 0.79594 1.18500 1.22243 1.22158 1.22439 0.98770 1.02001 0.95679 1.23029 0.98489 1.01787 0.97521 1.23017 1.02547 0.91044 1.02644 0.89802 0.90020 0.93745 0.81203 0.82071 0.80434 0.80252 0.82421 0.94616 0.94367 0.80059 0.94329 0.86015 0.90271 0.86872 0.86029 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.73 7.99 127.77 1.02 4.75 16 2 N -0.57 -22.08 2.20 -825.90 -1.82 -23.90 16 3 C 0.57 23.92 7.64 86.81 0.66 24.59 16 4 O -0.57 -26.09 15.72 -3.88 -0.06 -26.15 16 5 C -0.03 -1.06 6.74 41.61 0.28 -0.78 16 6 C -0.03 -1.09 9.51 23.02 0.22 -0.87 16 7 C -0.08 -2.25 5.75 -21.28 -0.12 -2.38 16 8 C -0.10 -1.79 9.81 22.30 0.22 -1.57 16 9 C -0.08 -0.88 9.96 22.07 0.22 -0.66 16 10 C -0.07 -0.78 9.94 22.06 0.22 -0.56 16 11 C -0.10 -1.83 10.00 22.31 0.22 -1.61 16 12 C 0.05 1.46 6.69 40.28 0.27 1.73 16 13 N -0.23 -7.79 11.55 -51.93 -0.60 -8.39 16 14 N -0.20 -7.38 7.13 -48.75 -0.35 -7.73 16 15 C 0.17 6.32 2.30 45.00 0.10 6.43 16 16 H 0.07 3.10 6.74 -2.39 -0.02 3.08 16 17 C 0.15 6.26 5.28 86.38 0.46 6.72 16 18 N -0.74 -40.38 5.44 -343.44 -1.87 -42.25 16 19 C -0.24 -13.92 9.99 84.03 0.84 -13.08 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 22 N -0.97 -63.32 13.06 21.65 0.28 -63.04 16 23 Si 0.98 48.07 29.55 68.60 2.03 50.10 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 26 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 27 C -0.17 -4.70 5.09 -10.79 -0.05 -4.76 16 28 C -0.17 -4.21 10.18 30.62 0.31 -3.90 16 29 C -0.16 -3.59 9.89 30.62 0.30 -3.29 16 30 H 0.08 2.55 6.38 -2.39 -0.02 2.53 16 31 H 0.08 2.57 6.92 -2.39 -0.02 2.55 16 32 H 0.04 1.81 7.20 -2.38 -0.02 1.80 16 33 H 0.17 5.00 7.70 -2.91 -0.02 4.98 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.04 1.45 7.07 -2.39 -0.02 1.43 16 39 H 0.04 1.58 7.81 -2.39 -0.02 1.56 16 40 H 0.37 22.22 7.32 -92.71 -0.68 21.54 16 41 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.12 3.01 7.41 -2.39 -0.02 3.00 16 43 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 44 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.09 2.24 7.98 -2.39 -0.02 2.23 16 Total: -1.00 -81.45 383.48 3.59 -77.86 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.34 Total: 36.98 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.64 Total: 6.52 kcal Atomic # 7 Polarization: -140.96 SS G_CDS: -4.35 Total: -145.31 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -81.45 3.59 -77.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571365310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.881 kcal (2) G-P(sol) polarization free energy of solvation -81.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds