Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.46926 * 240.00099 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47227 * 119.99890 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00221 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05278 * 359.71834 * 12 11 10 14 14 C 1.38118 * 119.94459 * 179.70225 * 13 12 11 15 15 C 1.38288 * 120.05741 * 0.59838 * 14 13 12 16 16 C 1.38248 * 120.10611 * 359.67970 * 15 14 13 17 17 C 1.50710 * 119.96907 * 179.97438 * 16 15 14 18 18 N 1.46894 * 109.46934 * 270.02137 * 17 16 15 19 19 C 1.46895 * 110.99932 * 180.02562 * 18 17 16 20 20 H 1.09005 * 109.50395 * 324.92186 * 19 18 17 21 21 C 1.53042 * 109.50667 * 85.00090 * 19 18 17 22 22 N 1.46839 * 109.52573 * 179.12202 * 21 19 18 23 23 C 1.46849 * 111.20174 * 298.25708 * 22 21 19 24 24 C 1.53042 * 109.52209 * 61.74102 * 23 22 21 25 25 C 1.53116 * 109.27622 * 300.82579 * 24 23 22 26 26 F 1.39901 * 109.52385 * 297.74627 * 25 24 23 27 27 F 1.39909 * 109.52079 * 177.56018 * 25 24 23 28 28 C 1.38165 * 120.05851 * 0.02562 * 16 15 14 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 31 31 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 32 32 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 33 33 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 34 34 H 1.08004 * 120.02895 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.97502 * 180.30380 * 14 13 12 36 36 H 1.07995 * 119.95092 * 179.70465 * 15 14 13 37 37 H 1.08999 * 109.46827 * 30.02319 * 17 16 15 38 38 H 1.08997 * 109.46412 * 150.02323 * 17 16 15 39 39 H 1.00898 * 111.00516 * 303.95740 * 18 17 16 40 40 H 1.08999 * 109.45762 * 299.13766 * 21 19 18 41 41 H 1.08995 * 109.45840 * 59.11303 * 21 19 18 42 42 H 1.00902 * 111.00029 * 62.35528 * 22 21 19 43 43 H 1.09000 * 109.46380 * 181.75947 * 23 22 21 44 44 H 1.08994 * 109.45740 * 301.73078 * 23 22 21 45 45 H 1.08997 * 109.50110 * 60.76010 * 24 23 22 46 46 H 1.09000 * 109.50171 * 180.84412 * 24 23 22 47 47 H 1.08001 * 120.02879 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2709 -6.0394 0.0018 13 6 3.6566 -5.9682 -0.0041 14 6 4.4066 -7.1279 0.0027 15 6 3.7777 -8.3595 0.0030 16 6 2.3972 -8.4332 0.0030 17 6 1.7150 -9.7770 0.0027 18 7 1.4937 -10.2134 -1.3824 19 6 0.8285 -11.5225 -1.4220 20 1 1.1795 -12.1344 -0.5910 21 6 -0.6857 -11.3298 -1.3106 22 7 -1.3525 -12.6367 -1.3712 23 6 -1.0938 -13.3060 -2.6525 24 6 0.4081 -13.5577 -2.8039 25 6 1.1531 -12.2213 -2.7452 26 9 0.7478 -11.4127 -3.8125 27 9 2.5309 -12.4501 -2.8274 28 6 1.6424 -7.2759 0.0023 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8719 -3.6044 -0.8895 33 1 2.8719 -3.6043 0.8905 34 1 4.1484 -5.0066 -0.0096 35 1 5.4853 -7.0730 0.0031 36 1 4.3658 -9.2653 0.0035 37 1 2.3439 -10.5039 0.5166 38 1 0.7568 -9.6980 0.5162 39 1 0.9672 -9.5249 -1.8988 40 1 -0.9213 -10.8455 -0.3630 41 1 -1.0338 -10.7061 -2.1338 42 1 -1.0755 -13.2203 -0.5960 43 1 -1.6260 -14.2568 -2.6795 44 1 -1.4401 -12.6728 -3.4692 45 1 0.7525 -14.2021 -1.9951 46 1 0.6013 -14.0409 -3.7617 47 1 0.5640 -7.3340 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = -122.538637 kcal Electronic energy + Delta-G solvation = -28958.635248 eV Core-core repulsion = 24583.438706 eV Total energy + Delta-G solvation = -4375.196543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.18386 -47.19089 -39.91104 -39.12003 -37.50962 -35.67393 -33.39146 -31.85301 -31.50779 -30.82088 -29.30794 -28.77084 -25.60254 -24.81622 -24.16358 -23.05337 -22.27888 -21.76445 -21.17223 -20.18444 -18.08155 -17.61726 -17.45773 -16.81472 -16.29099 -16.18380 -15.68813 -15.58184 -15.50952 -15.33134 -15.20508 -14.70470 -14.48046 -14.27592 -14.00838 -13.71578 -13.56744 -13.32092 -13.26681 -12.87368 -12.82324 -12.68663 -12.63546 -12.34501 -12.27302 -12.06482 -11.77733 -11.46030 -11.38474 -11.32106 -10.90147 -10.84872 -10.71028 -10.46525 -9.87260 -9.71612 -9.66939 -9.32595 -8.81074 -8.55187 -8.45642 -7.86208 -6.11223 -4.16039 1.37665 1.66847 3.17857 3.28169 3.32488 3.34062 3.35054 3.62107 3.75896 3.81960 3.89215 4.01980 4.12802 4.30919 4.40256 4.48198 4.66784 4.71552 4.85280 4.91356 4.97488 5.04036 5.13463 5.14428 5.24154 5.25059 5.32530 5.35465 5.45867 5.46731 5.61938 5.77849 6.01911 6.04431 6.13112 6.17878 6.42377 6.50394 6.54250 6.66807 6.68258 6.71076 6.87586 6.95750 7.48854 7.62466 7.79814 8.04204 8.22582 8.89236 9.48261 11.00280 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.001871 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.596158 B =14959.628891 C =15640.235598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.316 6.316 12 C 0.145 3.855 13 C -0.208 4.208 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.055 4.055 17 C 0.105 3.895 18 N -0.671 5.671 19 C 0.014 3.986 20 H 0.104 0.896 21 C 0.027 3.973 22 N -0.678 5.678 23 C 0.057 3.943 24 C -0.200 4.200 25 C 0.303 3.697 26 F -0.195 7.195 27 F -0.192 7.192 28 C -0.155 4.155 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.355 0.645 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.345 0.655 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -30.670 -2.099 30.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.229 6.229 12 C 0.098 3.902 13 C -0.227 4.227 14 C -0.099 4.099 15 C -0.165 4.165 16 C -0.056 4.056 17 C -0.023 4.023 18 N -0.302 5.302 19 C -0.100 4.100 20 H 0.123 0.877 21 C -0.104 4.104 22 N -0.307 5.307 23 C -0.073 4.073 24 C -0.241 4.241 25 C 0.266 3.734 26 F -0.176 7.176 27 F -0.173 7.173 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.175 0.825 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.163 0.837 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.935 -30.474 -2.391 30.582 hybrid contribution 1.019 1.111 0.193 1.520 sum 1.953 -29.363 -2.197 29.509 Atomic orbital electron populations 1.69965 1.06098 1.27101 1.49580 1.24993 0.94922 0.99395 0.94893 0.86538 0.79494 0.82562 0.78724 1.20082 1.21104 1.20093 1.20930 0.93011 0.90217 1.52400 0.92415 1.19120 0.94162 0.89006 0.98850 1.23336 0.97092 0.80795 0.99662 1.86169 1.36562 1.13212 1.86979 1.19135 0.90113 0.87476 0.93473 1.21419 0.93227 0.99901 1.08123 1.20904 0.99496 0.91918 0.97628 1.20764 0.93664 0.97447 1.04675 1.19295 0.93624 0.93005 0.99638 1.20887 0.98923 0.93832 0.88618 1.60416 1.52414 1.03162 1.14242 1.23356 0.95988 0.94163 0.96466 0.87746 1.22887 0.89993 0.92896 1.04625 1.60487 1.60727 1.04879 1.04588 1.22098 0.91576 1.00664 0.92959 1.23393 0.99050 0.95544 1.06085 1.21032 0.76929 0.89997 0.85491 1.93001 1.90204 1.75400 1.58985 1.93030 1.32532 1.95017 1.96732 1.20258 0.99962 0.89525 1.07666 0.92635 0.95409 0.95414 0.93105 0.93136 0.85216 0.86110 0.86352 0.89917 0.93688 0.82531 0.89035 0.89342 0.83676 0.88971 0.89577 0.88787 0.88570 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.40 4.68 37.16 0.17 1.57 16 11 O -0.32 -6.49 10.14 -19.43 -0.20 -6.68 16 12 C 0.14 2.50 6.69 -39.22 -0.26 2.24 16 13 C -0.21 -3.25 9.04 -39.43 -0.36 -3.61 16 14 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 15 C -0.15 -1.81 9.70 -39.56 -0.38 -2.19 16 16 C -0.06 -0.67 5.39 -104.64 -0.56 -1.24 16 17 C 0.11 0.95 5.61 -4.97 -0.03 0.92 16 18 N -0.67 -6.24 6.09 -107.91 -0.66 -6.90 16 19 C 0.01 0.10 2.18 -67.63 -0.15 -0.05 16 20 H 0.10 0.63 7.80 -51.93 -0.41 0.22 16 21 C 0.03 0.17 5.69 -3.84 -0.02 0.15 16 22 N -0.68 -3.62 6.87 -113.82 -0.78 -4.40 16 23 C 0.06 0.27 6.44 -3.83 -0.02 0.25 16 24 C -0.20 -1.04 5.60 -26.65 -0.15 -1.19 16 25 C 0.30 2.55 1.79 -26.61 -0.05 2.50 16 26 F -0.19 -2.07 16.11 2.25 0.04 -2.03 16 27 F -0.19 -2.12 17.03 2.25 0.04 -2.09 16 28 C -0.15 -2.25 9.64 -39.44 -0.38 -2.63 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 33 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 34 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.08 0.67 8.00 -51.93 -0.42 0.25 16 38 H 0.04 0.36 7.40 -51.93 -0.38 -0.03 16 39 H 0.35 3.53 8.46 -39.29 -0.33 3.20 16 40 H 0.09 0.55 7.48 -51.93 -0.39 0.16 16 41 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 42 H 0.34 1.27 8.86 -39.29 -0.35 0.93 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -31.58 389.05 -10.27 -41.85 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.14 Total: 1.49 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.15 Total: -17.64 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.70 Total: -37.03 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.20 Total: -6.68 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.58 -10.27 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.689 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds