Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.46926 * 240.00099 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47227 * 119.99890 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47036 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00221 * 180.02562 * 11 10 9 13 13 C 1.38758 * 120.05278 * 359.71834 * 12 11 10 14 14 C 1.38118 * 119.94459 * 179.70225 * 13 12 11 15 15 C 1.38288 * 120.05741 * 0.59838 * 14 13 12 16 16 C 1.38248 * 120.10611 * 359.67970 * 15 14 13 17 17 C 1.50710 * 119.96907 * 179.97438 * 16 15 14 18 18 N 1.46894 * 109.46934 * 270.02137 * 17 16 15 19 19 C 1.46895 * 110.99932 * 180.02562 * 18 17 16 20 20 H 1.09005 * 109.50395 * 324.92186 * 19 18 17 21 21 C 1.53042 * 109.50667 * 85.00090 * 19 18 17 22 22 N 1.46839 * 109.52573 * 179.12202 * 21 19 18 23 23 C 1.46849 * 111.20174 * 298.25708 * 22 21 19 24 24 C 1.53042 * 109.52209 * 61.74102 * 23 22 21 25 25 C 1.53116 * 109.27622 * 300.82579 * 24 23 22 26 26 F 1.39901 * 109.52385 * 297.74627 * 25 24 23 27 27 F 1.39909 * 109.52079 * 177.56018 * 25 24 23 28 28 C 1.38165 * 120.05851 * 0.02562 * 16 15 14 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 31 31 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 32 32 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 33 33 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 34 34 H 1.08004 * 120.02895 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.97502 * 180.30380 * 14 13 12 36 36 H 1.07995 * 119.95092 * 179.70465 * 15 14 13 37 37 H 1.08999 * 109.46827 * 30.02319 * 17 16 15 38 38 H 1.08997 * 109.46412 * 150.02323 * 17 16 15 39 39 H 1.00898 * 111.00516 * 303.95740 * 18 17 16 40 40 H 1.08999 * 109.45762 * 299.13766 * 21 19 18 41 41 H 1.08995 * 109.45840 * 59.11303 * 21 19 18 42 42 H 1.00902 * 111.00029 * 62.35528 * 22 21 19 43 43 H 1.09000 * 109.46380 * 181.75947 * 23 22 21 44 44 H 1.08994 * 109.45740 * 301.73078 * 23 22 21 45 45 H 1.08997 * 109.50110 * 60.76010 * 24 23 22 46 46 H 1.09000 * 109.50171 * 180.84412 * 24 23 22 47 47 H 1.08001 * 120.02879 * 179.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2709 -6.0394 0.0018 13 6 3.6566 -5.9682 -0.0041 14 6 4.4066 -7.1279 0.0027 15 6 3.7777 -8.3595 0.0030 16 6 2.3972 -8.4332 0.0030 17 6 1.7150 -9.7770 0.0027 18 7 1.4937 -10.2134 -1.3824 19 6 0.8285 -11.5225 -1.4220 20 1 1.1795 -12.1344 -0.5910 21 6 -0.6857 -11.3298 -1.3106 22 7 -1.3525 -12.6367 -1.3712 23 6 -1.0938 -13.3060 -2.6525 24 6 0.4081 -13.5577 -2.8039 25 6 1.1531 -12.2213 -2.7452 26 9 0.7478 -11.4127 -3.8125 27 9 2.5309 -12.4501 -2.8274 28 6 1.6424 -7.2759 0.0023 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8719 -3.6044 -0.8895 33 1 2.8719 -3.6043 0.8905 34 1 4.1484 -5.0066 -0.0096 35 1 5.4853 -7.0730 0.0031 36 1 4.3658 -9.2653 0.0035 37 1 2.3439 -10.5039 0.5166 38 1 0.7568 -9.6980 0.5162 39 1 0.9672 -9.5249 -1.8988 40 1 -0.9213 -10.8455 -0.3630 41 1 -1.0338 -10.7061 -2.1338 42 1 -1.0755 -13.2203 -0.5960 43 1 -1.6260 -14.2568 -2.6795 44 1 -1.4401 -12.6728 -3.4692 45 1 0.7525 -14.2021 -1.9951 46 1 0.6013 -14.0409 -3.7617 47 1 0.5640 -7.3340 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = -143.695463 kcal Electronic energy + Delta-G solvation = -28959.552677 eV Core-core repulsion = 24583.438706 eV Total energy + Delta-G solvation = -4376.113972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90255 -47.93763 -41.11711 -39.75384 -38.69062 -36.42493 -35.46636 -32.73774 -32.57521 -31.97848 -30.69020 -29.57532 -27.09797 -26.08334 -24.69435 -23.78656 -23.34814 -23.26289 -21.87778 -21.44706 -19.24568 -18.52521 -18.20119 -18.06499 -17.45554 -17.10275 -16.96010 -16.89507 -16.62492 -16.30014 -16.16904 -15.81170 -15.33491 -15.26524 -14.72043 -14.44953 -14.34945 -14.33102 -14.30583 -14.21044 -14.04072 -13.79669 -13.46231 -13.39367 -13.11272 -13.01604 -12.93375 -12.59221 -12.58552 -12.55063 -12.38970 -12.21419 -11.92479 -11.61326 -11.59293 -11.43502 -11.33783 -10.62743 -10.27328 -9.82496 -9.14724 -9.11149 -8.27803 -6.41710 0.30265 0.52382 1.39936 1.43973 1.51964 2.25369 2.48211 2.56430 2.74092 2.98550 3.06363 3.08977 3.30792 3.40654 3.63852 3.72954 3.80163 3.89507 4.02311 4.11712 4.20567 4.24756 4.25564 4.31804 4.39157 4.42149 4.53762 4.55044 4.56589 4.62511 4.71743 4.76898 4.77870 4.84866 5.04496 5.09305 5.29782 5.40382 5.44956 5.50568 5.58773 5.66020 5.66982 5.86355 5.91701 6.06331 6.11319 6.38731 6.55173 6.72666 7.28333 8.85055 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.001871 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.596158 B =14959.628891 C =15640.235598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.029 3.971 10 C 0.085 3.915 11 O -0.341 6.341 12 C 0.106 3.894 13 C -0.221 4.221 14 C -0.081 4.081 15 C -0.140 4.140 16 C -0.048 4.048 17 C 0.110 3.890 18 N -0.684 5.684 19 C 0.021 3.979 20 H 0.124 0.876 21 C 0.035 3.965 22 N -0.682 5.682 23 C 0.060 3.940 24 C -0.191 4.191 25 C 0.287 3.713 26 F -0.213 7.213 27 F -0.210 7.210 28 C -0.161 4.161 29 H 0.267 0.733 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.347 0.653 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.358 0.642 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -32.743 -1.482 32.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.008 4.008 10 C 0.011 3.989 11 O -0.256 6.256 12 C 0.060 3.940 13 C -0.240 4.240 14 C -0.099 4.099 15 C -0.159 4.159 16 C -0.049 4.049 17 C -0.017 4.017 18 N -0.315 5.315 19 C -0.092 4.092 20 H 0.141 0.859 21 C -0.097 4.097 22 N -0.311 5.311 23 C -0.070 4.070 24 C -0.231 4.231 25 C 0.251 3.749 26 F -0.194 7.194 27 F -0.191 7.191 28 C -0.180 4.180 29 H 0.076 0.924 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.178 0.822 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.535 -32.591 -1.766 32.737 hybrid contribution 0.512 1.573 -0.020 1.655 sum 3.046 -31.017 -1.787 31.218 Atomic orbital electron populations 1.70113 1.08023 1.28313 1.50480 1.26054 0.95859 1.03712 0.94134 0.85331 0.78120 0.77162 0.79421 1.18898 1.20712 1.18792 1.21364 0.93807 0.91039 1.52321 0.91166 1.18958 0.94528 0.91364 0.95985 1.22844 0.95391 0.80303 1.00373 1.86076 1.37435 1.13747 1.88321 1.19497 0.91040 0.86939 0.96498 1.21509 0.92705 1.00877 1.08945 1.21234 1.00829 0.91304 0.96500 1.21173 0.93914 0.98133 1.02670 1.19641 0.93849 0.93659 0.97717 1.20910 0.99655 0.92292 0.88865 1.60403 1.53014 1.03884 1.14185 1.23393 0.96300 0.93144 0.96371 0.85863 1.22753 0.89414 0.93359 1.04126 1.60469 1.60600 1.04743 1.05332 1.22109 0.91477 1.01212 0.92209 1.23386 0.98703 0.93871 1.07147 1.21606 0.76325 0.91553 0.85447 1.92963 1.90302 1.76173 1.59994 1.92990 1.34079 1.95170 1.96815 1.20452 1.00486 0.89409 1.07641 0.92411 0.98399 0.98260 0.92415 0.92230 0.85658 0.83395 0.83667 0.88032 0.92397 0.83375 0.88481 0.91162 0.82249 0.86845 0.91205 0.86713 0.88276 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.98 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.03 1.60 5.34 29.85 0.16 1.76 16 10 C 0.09 3.81 4.68 71.98 0.34 4.15 16 11 O -0.34 -14.71 10.14 -92.44 -0.94 -15.65 16 12 C 0.11 3.73 6.69 22.51 0.15 3.88 16 13 C -0.22 -6.90 9.04 22.37 0.20 -6.69 16 14 C -0.08 -1.98 10.04 22.25 0.22 -1.75 16 15 C -0.14 -3.09 9.70 22.28 0.22 -2.87 16 16 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 17 C 0.11 1.72 5.61 85.56 0.48 2.20 16 18 N -0.68 -11.63 6.09 -495.30 -3.02 -14.65 16 19 C 0.02 0.26 2.18 44.97 0.10 0.36 16 20 H 0.12 1.07 7.80 -2.38 -0.02 1.05 16 21 C 0.04 0.39 5.69 86.33 0.49 0.89 16 22 N -0.68 -5.86 6.87 -514.02 -3.53 -9.38 16 23 C 0.06 0.46 6.44 86.33 0.56 1.01 16 24 C -0.19 -1.59 5.60 30.65 0.17 -1.42 16 25 C 0.29 4.47 1.79 30.67 0.05 4.52 16 26 F -0.21 -4.52 16.11 44.97 0.72 -3.80 16 27 F -0.21 -4.36 17.03 44.97 0.77 -3.59 16 28 C -0.16 -4.67 9.64 22.36 0.22 -4.45 16 29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 2.45 7.65 -2.39 -0.02 2.43 16 33 H 0.06 2.50 7.67 -2.39 -0.02 2.49 16 34 H 0.13 3.90 6.30 -2.91 -0.02 3.89 16 35 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.10 1.25 8.00 -2.39 -0.02 1.23 16 38 H 0.06 0.77 7.40 -2.39 -0.02 0.76 16 39 H 0.35 6.76 8.46 -89.70 -0.76 6.01 16 40 H 0.10 0.98 7.48 -2.39 -0.02 0.97 16 41 H 0.07 1.06 7.85 -2.39 -0.02 1.04 16 42 H 0.36 1.58 8.86 -89.69 -0.79 0.79 16 43 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 45 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -70.85 389.05 -0.30 -71.14 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.56 Total: 16.90 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 3.94 Total: -30.09 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -6.26 Total: -80.71 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.94 Total: -15.65 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 1.49 Total: -7.39 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.85 -0.30 -71.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.552 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds