Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46769 * 2 1 4 4 C 1.50700 * 109.46793 * 240.00046 * 2 1 3 5 5 H 1.07996 * 119.99758 * 240.00159 * 4 2 1 6 6 C 1.37877 * 119.99817 * 59.99997 * 4 2 1 7 7 N 1.31509 * 120.00284 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99722 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46901 * 89.99978 * 8 6 4 10 10 H 1.48493 * 109.47176 * 210.00015 * 8 6 4 11 11 H 1.48505 * 109.47064 * 330.00071 * 8 6 4 12 12 C 1.52998 * 109.47119 * 120.00014 * 2 1 3 13 13 N 1.46504 * 109.47069 * 300.00010 * 12 2 1 14 14 C 1.34773 * 119.99692 * 180.02562 * 13 12 2 15 15 O 1.21351 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.49449 * 120.00211 * 179.97438 * 14 13 12 17 17 O 1.21358 * 119.99680 * 353.22892 * 16 14 13 18 18 N 1.34771 * 120.00454 * 173.23285 * 16 14 13 19 19 C 1.46927 * 120.63084 * 351.35296 * 18 16 14 20 20 C 1.53196 * 108.77554 * 233.63384 * 19 18 16 21 21 C 1.53043 * 109.30862 * 305.36136 * 20 19 18 22 22 C 1.53037 * 109.53770 * 61.36979 * 21 20 19 23 23 C 1.53003 * 109.50123 * 58.58417 * 22 21 20 24 24 C 1.50702 * 109.49649 * 178.64778 * 22 21 20 25 25 O 1.20827 * 119.99979 * 359.93294 * 24 22 21 26 26 O 1.34231 * 120.00061 * 179.97438 * 24 22 21 27 27 C 1.47005 * 120.61538 * 171.37837 * 18 16 14 28 28 H 1.09008 * 109.46799 * 299.99644 * 1 2 3 29 29 H 1.08999 * 109.47703 * 59.99769 * 1 2 3 30 30 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46746 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47279 * 299.99769 * 3 2 1 33 33 H 1.08996 * 109.47391 * 60.00334 * 3 2 1 34 34 H 0.97007 * 120.00016 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46910 * 179.97438 * 12 2 1 36 36 H 1.08997 * 109.47326 * 60.00212 * 12 2 1 37 37 H 0.96993 * 120.00449 * 0.02562 * 13 12 2 38 38 H 1.08997 * 109.58935 * 113.84253 * 19 18 16 39 39 H 1.08998 * 109.58252 * 353.41698 * 19 18 16 40 40 H 1.09001 * 109.49759 * 185.41273 * 20 19 18 41 41 H 1.08995 * 109.52504 * 65.32645 * 20 19 18 42 42 H 1.08998 * 109.46311 * 301.34541 * 21 20 19 43 43 H 1.09002 * 109.45790 * 181.38595 * 21 20 19 44 44 H 1.08994 * 109.47062 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47248 * 60.06171 * 23 22 21 46 46 H 1.09000 * 109.46689 * 300.06418 * 23 22 21 47 47 H 0.96699 * 117.00126 * 179.97438 * 26 24 22 48 48 H 1.09000 * 109.62580 * 6.59538 * 27 18 16 49 49 H 1.09005 * 109.57705 * 246.14813 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4123 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5762 -1.4769 3.7808 16 6 1.3801 0.2139 4.8898 17 8 0.7870 1.2673 4.7826 18 7 1.5900 -0.3202 6.1092 19 6 2.1349 -1.6776 6.2482 20 6 1.2008 -2.4942 7.1468 21 6 1.0030 -1.7574 8.4735 22 6 0.3534 -0.3968 8.2114 23 6 -0.9879 -0.5991 7.5036 24 6 0.1287 0.3140 9.5212 25 8 0.4535 -0.2138 10.5584 26 8 -0.4330 1.5330 9.5356 27 6 1.2774 0.4444 7.3253 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7086 1.1613 -3.4844 35 1 3.1300 -0.7216 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9938 0.7578 2.3565 38 1 3.1259 -1.6291 6.6994 39 1 2.2005 -2.1472 5.2668 40 1 1.6420 -3.4728 7.3364 41 1 0.2373 -2.6190 6.6529 42 1 1.9697 -1.6115 8.9556 43 1 0.3584 -2.3482 9.1244 44 1 -1.4499 0.3703 7.3168 45 1 -1.6446 -1.1985 8.1339 46 1 -0.8249 -1.1131 6.5564 47 1 -0.5573 1.9490 10.3996 48 1 0.7773 1.3743 7.0547 49 1 2.1986 0.6658 7.8643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = -155.143146 kcal Electronic energy + Delta-G solvation = -31028.523493 eV Core-core repulsion = 26763.000628 eV Total energy + Delta-G solvation = -4265.522865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47129 -40.49384 -38.82695 -37.75655 -36.61446 -36.46434 -34.12691 -33.22305 -32.12595 -30.94247 -27.87919 -26.76041 -25.75848 -25.71588 -25.22131 -24.87326 -22.85126 -22.24877 -20.19383 -19.28223 -18.79618 -18.31212 -17.83150 -17.11725 -16.69978 -16.14523 -15.96272 -15.75526 -15.33798 -15.03692 -14.84319 -14.57224 -14.42524 -14.17544 -13.80816 -13.71372 -13.38332 -13.06388 -12.96843 -12.79573 -12.51376 -12.26721 -12.17167 -11.97268 -11.84134 -11.58381 -11.43816 -11.31089 -11.23400 -10.94761 -10.92852 -10.84579 -10.76062 -10.71018 -10.43221 -10.22646 -9.69250 -9.47196 -9.08247 -8.95190 -8.82917 -8.65041 -8.40417 -6.05592 -4.16586 1.53611 1.75373 2.31184 2.68679 3.26034 3.32750 3.33518 3.36500 3.64536 4.06681 4.27724 4.36058 4.38709 4.63808 4.70653 4.79480 4.95108 5.14375 5.19877 5.21220 5.30214 5.33336 5.42362 5.54071 5.60731 5.64312 5.79575 5.89660 6.04252 6.05578 6.09015 6.16802 6.18236 6.42682 6.62984 6.80826 6.81215 6.89275 6.96432 6.97133 7.29249 7.49150 7.51476 7.52165 7.66092 7.88493 7.96747 8.08503 8.25914 8.35971 8.83668 9.49606 10.95799 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.002314 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.350505 B =12097.313724 C =12580.389622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.498 3.502 15 O -0.525 6.525 16 C 0.511 3.489 17 O -0.517 6.517 18 N -0.584 5.584 19 C 0.066 3.934 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.064 4.064 23 C -0.141 4.141 24 C 0.493 3.507 25 O -0.512 6.512 26 O -0.510 6.510 27 C 0.122 3.878 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.009 0.991 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.410 0.590 48 H 0.109 0.891 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -1.565 21.782 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.005 3.995 13 N -0.326 5.326 14 C 0.278 3.722 15 O -0.405 6.405 16 C 0.294 3.706 17 O -0.392 6.392 18 N -0.318 5.318 19 C -0.055 4.055 20 C -0.175 4.175 21 C -0.139 4.139 22 C -0.066 4.066 23 C -0.198 4.198 24 C 0.334 3.666 25 O -0.399 6.399 26 O -0.321 6.321 27 C -0.001 4.001 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.166 0.834 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.269 0.731 48 H 0.127 0.873 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.041 -1.886 21.490 21.669 hybrid contribution -0.002 0.221 -0.018 0.222 sum -2.043 -1.665 21.472 21.633 Atomic orbital electron populations 1.21866 0.97600 0.99282 1.00409 1.18380 0.92954 0.92867 0.90246 1.21863 0.98663 0.98252 1.00434 1.20939 1.31751 1.12194 0.89751 0.92332 1.24881 0.94817 0.94886 0.98893 1.69805 1.36463 1.22630 1.23340 0.86557 0.79296 0.79371 0.82558 1.20697 1.21256 1.19894 1.21981 0.98671 0.96045 0.82777 1.46269 1.49957 1.31288 1.05125 1.19918 0.82338 0.85001 0.84908 1.90447 1.38639 1.26203 1.85249 1.20445 0.79890 0.85656 0.84633 1.90759 1.39262 1.22990 1.86170 1.47847 1.62849 1.16945 1.04202 1.22984 0.95928 0.80645 1.05983 1.22055 1.01169 0.99229 0.95012 1.21525 1.01502 0.92751 0.98146 1.20902 0.99304 0.96229 0.90189 1.21890 0.93365 1.03553 1.01000 1.23245 0.72858 0.79082 0.91432 1.90722 1.47872 1.66355 1.34951 1.84572 1.74487 1.32215 1.40842 1.21621 0.98406 0.95306 0.84752 0.97316 0.89408 0.95324 0.95312 0.89422 0.97244 0.92910 0.91853 0.91838 0.75091 0.91208 0.83435 0.89676 0.90845 0.90697 0.90597 0.90852 0.91900 0.90409 0.73082 0.87303 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 4 C -0.51 -12.83 8.01 -34.44 -0.28 -13.11 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.19 9.35 55.43 0.52 -22.67 16 8 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 C 0.13 2.52 4.50 -4.04 -0.02 2.50 16 13 N -0.68 -11.82 4.95 -60.73 -0.30 -12.12 16 14 C 0.50 8.11 7.74 -11.59 -0.09 8.02 16 15 O -0.53 -8.97 13.19 5.50 0.07 -8.90 16 16 C 0.51 7.46 7.73 -11.59 -0.09 7.37 16 17 O -0.52 -8.48 15.93 5.49 0.09 -8.39 16 18 N -0.58 -6.82 2.41 -173.21 -0.42 -7.24 16 19 C 0.07 0.68 5.98 -3.71 -0.02 0.65 16 20 C -0.14 -1.11 5.74 -26.61 -0.15 -1.26 16 21 C -0.10 -0.84 4.01 -26.69 -0.11 -0.95 16 22 C -0.06 -0.57 0.71 -155.54 -0.11 -0.68 16 23 C -0.14 -1.23 7.92 37.16 0.29 -0.94 16 24 C 0.49 4.51 6.93 36.01 0.25 4.76 16 25 O -0.51 -5.93 16.74 -18.75 -0.31 -6.24 16 26 O -0.51 -3.62 13.26 -39.26 -0.52 -4.14 16 27 C 0.12 1.22 5.06 -3.67 -0.02 1.20 16 28 H 0.01 0.16 6.86 -51.92 -0.36 -0.20 16 29 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 33 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.41 7.16 5.65 -40.82 -0.23 6.93 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.15 1.84 4.32 -54.76 -0.24 1.60 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 42 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 44 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.74 5.97 -51.93 -0.31 0.43 16 47 H 0.41 1.16 9.10 45.56 0.41 1.57 16 48 H 0.11 1.20 7.01 -51.93 -0.36 0.84 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -29.09 382.56 -6.62 -35.71 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.58 Total: 7.97 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 0.09 Total: 5.03 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.20 Total: -42.03 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.67 Total: -27.67 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.09 -6.62 -35.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.433 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds