Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46769 * 2 1 4 4 C 1.50700 * 109.46793 * 240.00046 * 2 1 3 5 5 H 1.07996 * 119.99758 * 240.00159 * 4 2 1 6 6 C 1.37877 * 119.99817 * 59.99997 * 4 2 1 7 7 N 1.31509 * 120.00284 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99722 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46901 * 89.99978 * 8 6 4 10 10 H 1.48493 * 109.47176 * 210.00015 * 8 6 4 11 11 H 1.48505 * 109.47064 * 330.00071 * 8 6 4 12 12 C 1.52998 * 109.47119 * 120.00014 * 2 1 3 13 13 N 1.46504 * 109.47069 * 300.00010 * 12 2 1 14 14 C 1.34773 * 119.99692 * 180.02562 * 13 12 2 15 15 O 1.21351 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.49449 * 120.00211 * 179.97438 * 14 13 12 17 17 O 1.21358 * 119.99680 * 353.22892 * 16 14 13 18 18 N 1.34771 * 120.00454 * 173.23285 * 16 14 13 19 19 C 1.46927 * 120.63084 * 351.35296 * 18 16 14 20 20 C 1.53196 * 108.77554 * 233.63384 * 19 18 16 21 21 C 1.53043 * 109.30862 * 305.36136 * 20 19 18 22 22 C 1.53037 * 109.53770 * 61.36979 * 21 20 19 23 23 C 1.53003 * 109.50123 * 58.58417 * 22 21 20 24 24 C 1.50702 * 109.49649 * 178.64778 * 22 21 20 25 25 O 1.20827 * 119.99979 * 359.93294 * 24 22 21 26 26 O 1.34231 * 120.00061 * 179.97438 * 24 22 21 27 27 C 1.47005 * 120.61538 * 171.37837 * 18 16 14 28 28 H 1.09008 * 109.46799 * 299.99644 * 1 2 3 29 29 H 1.08999 * 109.47703 * 59.99769 * 1 2 3 30 30 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46746 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47279 * 299.99769 * 3 2 1 33 33 H 1.08996 * 109.47391 * 60.00334 * 3 2 1 34 34 H 0.97007 * 120.00016 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46910 * 179.97438 * 12 2 1 36 36 H 1.08997 * 109.47326 * 60.00212 * 12 2 1 37 37 H 0.96993 * 120.00449 * 0.02562 * 13 12 2 38 38 H 1.08997 * 109.58935 * 113.84253 * 19 18 16 39 39 H 1.08998 * 109.58252 * 353.41698 * 19 18 16 40 40 H 1.09001 * 109.49759 * 185.41273 * 20 19 18 41 41 H 1.08995 * 109.52504 * 65.32645 * 20 19 18 42 42 H 1.08998 * 109.46311 * 301.34541 * 21 20 19 43 43 H 1.09002 * 109.45790 * 181.38595 * 21 20 19 44 44 H 1.08994 * 109.47062 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47248 * 60.06171 * 23 22 21 46 46 H 1.09000 * 109.46689 * 300.06418 * 23 22 21 47 47 H 0.96699 * 117.00126 * 179.97438 * 26 24 22 48 48 H 1.09000 * 109.62580 * 6.59538 * 27 18 16 49 49 H 1.09005 * 109.57705 * 246.14813 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4123 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5762 -1.4769 3.7808 16 6 1.3801 0.2139 4.8898 17 8 0.7870 1.2673 4.7826 18 7 1.5900 -0.3202 6.1092 19 6 2.1349 -1.6776 6.2482 20 6 1.2008 -2.4942 7.1468 21 6 1.0030 -1.7574 8.4735 22 6 0.3534 -0.3968 8.2114 23 6 -0.9879 -0.5991 7.5036 24 6 0.1287 0.3140 9.5212 25 8 0.4535 -0.2138 10.5584 26 8 -0.4330 1.5330 9.5356 27 6 1.2774 0.4444 7.3253 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7086 1.1613 -3.4844 35 1 3.1300 -0.7216 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9938 0.7578 2.3565 38 1 3.1259 -1.6291 6.6994 39 1 2.2005 -2.1472 5.2668 40 1 1.6420 -3.4728 7.3364 41 1 0.2373 -2.6190 6.6529 42 1 1.9697 -1.6115 8.9556 43 1 0.3584 -2.3482 9.1244 44 1 -1.4499 0.3703 7.3168 45 1 -1.6446 -1.1985 8.1339 46 1 -0.8249 -1.1131 6.5564 47 1 -0.5573 1.9490 10.3996 48 1 0.7773 1.3743 7.0547 49 1 2.1986 0.6658 7.8643 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615387.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = -173.522186 kcal Electronic energy + Delta-G solvation = -31029.320468 eV Core-core repulsion = 26763.000628 eV Total energy + Delta-G solvation = -4266.319840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.37641 -41.48556 -39.97268 -38.76792 -38.20541 -37.17893 -35.35888 -34.53667 -32.89311 -32.73197 -28.80318 -27.89394 -27.56953 -27.30963 -26.60071 -25.78088 -23.95357 -23.10558 -21.36232 -20.65274 -19.96938 -19.03150 -18.87829 -18.24580 -17.74515 -17.62501 -17.00282 -16.86447 -16.67155 -16.50023 -15.90467 -15.67054 -15.49837 -15.16256 -14.92360 -14.74143 -14.69938 -14.29858 -14.25165 -14.03315 -13.78035 -13.29844 -13.18450 -13.12154 -12.97628 -12.76695 -12.68807 -12.60856 -12.57129 -12.34852 -12.26377 -12.10704 -12.05271 -11.86731 -11.62102 -11.52073 -11.48392 -11.22832 -10.71275 -10.40371 -10.28942 -10.05655 -9.87407 -8.00070 -6.16384 0.31932 0.99195 1.29559 1.45521 1.48902 1.56493 2.00398 2.10707 2.43612 2.54785 3.24147 3.26360 3.41719 3.55395 3.70101 3.97629 4.09176 4.26998 4.36693 4.41302 4.44558 4.50435 4.54098 4.59782 4.70058 4.72981 4.83294 4.85317 4.92626 4.98804 5.03820 5.05834 5.10388 5.11351 5.19251 5.24700 5.36171 5.40053 5.53566 5.55588 5.66593 5.69439 5.91610 6.13261 6.20816 6.26425 6.42945 6.67943 6.87817 6.92809 6.96612 7.51802 8.99096 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.002314 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.350505 B =12097.313724 C =12580.389622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.125 4.125 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.144 3.856 13 N -0.679 5.679 14 C 0.500 3.500 15 O -0.533 6.533 16 C 0.514 3.486 17 O -0.539 6.539 18 N -0.573 5.573 19 C 0.063 3.937 20 C -0.129 4.129 21 C -0.097 4.097 22 C -0.062 4.062 23 C -0.138 4.138 24 C 0.501 3.499 25 O -0.537 6.537 26 O -0.508 6.508 27 C 0.121 3.879 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.412 0.588 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.429 0.571 48 H 0.100 0.900 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -2.117 23.527 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.563 4.563 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.021 3.979 13 N -0.330 5.330 14 C 0.281 3.719 15 O -0.412 6.412 16 C 0.296 3.704 17 O -0.416 6.416 18 N -0.306 5.306 19 C -0.057 4.057 20 C -0.166 4.166 21 C -0.135 4.135 22 C -0.064 4.064 23 C -0.195 4.195 24 C 0.343 3.657 25 O -0.426 6.426 26 O -0.322 6.322 27 C -0.001 4.001 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.147 0.853 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.292 0.708 48 H 0.118 0.882 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.980 -2.443 23.282 23.493 hybrid contribution -0.019 0.401 -0.469 0.617 sum -1.999 -2.042 22.813 22.991 Atomic orbital electron populations 1.21711 0.97354 0.98962 1.00170 1.18372 0.93127 0.92891 0.90605 1.21717 0.98221 0.98183 1.00169 1.21251 1.31675 1.12235 0.91113 0.92907 1.25489 0.95169 0.95549 1.01154 1.69928 1.37110 1.23427 1.23583 0.85731 0.78764 0.78359 0.79775 1.20518 1.21280 1.19722 1.21557 0.97991 0.95579 0.82773 1.46107 1.50527 1.31407 1.05005 1.20217 0.81858 0.84750 0.85067 1.90476 1.38722 1.26458 1.85587 1.20047 0.80123 0.85334 0.84870 1.90755 1.40581 1.23824 1.86416 1.47894 1.61462 1.17408 1.03787 1.23009 0.97229 0.79923 1.05547 1.22008 1.00629 0.99626 0.94374 1.21499 1.01616 0.92296 0.98082 1.20878 0.99106 0.96451 0.89979 1.21858 0.93521 1.03347 1.00805 1.23136 0.72341 0.79324 0.90907 1.90721 1.49119 1.67081 1.35709 1.84536 1.73741 1.31366 1.42517 1.21740 0.99359 0.94906 0.84078 0.95157 0.91933 0.95612 0.95788 0.91901 0.95180 0.93112 0.92638 0.92277 0.74979 0.89941 0.85319 0.87786 0.91017 0.90528 0.90107 0.91432 0.90689 0.91253 0.70846 0.88207 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 3 C -0.13 -5.58 8.08 71.98 0.58 -5.00 16 4 C -0.52 -26.61 8.01 25.60 0.21 -26.41 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 6 C 0.03 1.34 5.15 84.66 0.44 1.78 16 7 N -0.90 -47.79 9.35 21.45 0.20 -47.59 16 8 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 C 0.14 5.65 4.50 86.38 0.39 6.04 16 13 N -0.68 -23.31 4.95 -464.42 -2.30 -25.61 16 14 C 0.50 15.88 7.74 87.27 0.68 16.55 16 15 O -0.53 -17.73 13.19 -3.25 -0.04 -17.77 16 16 C 0.51 14.48 7.73 87.27 0.67 15.16 16 17 O -0.54 -17.21 15.93 -3.27 -0.05 -17.26 16 18 N -0.57 -12.48 2.41 -820.27 -1.98 -14.46 16 19 C 0.06 1.19 5.98 86.36 0.52 1.71 16 20 C -0.13 -1.79 5.74 30.67 0.18 -1.61 16 21 C -0.10 -1.37 4.01 30.62 0.12 -1.25 16 22 C -0.06 -0.98 0.71 -52.85 -0.04 -1.02 16 23 C -0.14 -2.18 7.92 71.98 0.57 -1.61 16 24 C 0.50 8.14 6.93 71.24 0.49 8.64 16 25 O -0.54 -11.38 16.74 21.96 0.37 -11.01 16 26 O -0.51 -6.14 13.26 -51.43 -0.68 -6.83 16 27 C 0.12 2.21 5.06 86.35 0.44 2.65 16 28 H 0.03 1.16 6.86 -2.38 -0.02 1.15 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 30 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 33 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 34 H 0.26 13.30 8.31 -92.70 -0.77 12.53 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.41 14.01 5.65 -92.71 -0.52 13.48 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.13 3.04 4.32 -47.22 -0.20 2.83 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.06 6.34 -2.39 -0.02 1.04 16 42 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 43 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 44 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.22 5.97 -2.39 -0.01 1.21 16 47 H 0.43 1.46 9.10 -74.06 -0.67 0.78 16 48 H 0.10 2.06 7.01 -2.39 -0.02 2.04 16 49 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -61.35 382.56 2.94 -58.41 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.40 Total: 25.52 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.79 Total: 12.98 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -4.08 Total: -87.66 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.41 Total: -52.87 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -61.35 2.94 -58.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615387.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.116 kcal (2) G-P(sol) polarization free energy of solvation -61.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds