Wall clock time and date at job start Sat Apr 11 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48510 * 109.46958 * 270.00125 * 3 2 1 5 5 H 1.48496 * 109.47019 * 29.99567 * 3 2 1 6 6 H 1.48492 * 109.47509 * 150.00107 * 3 2 1 7 7 C 1.37883 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99890 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99849 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.50056 * 59.93788 * 9 7 2 11 11 C 1.53051 * 109.49554 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53686 * 181.31340 * 11 9 7 13 13 C 1.53185 * 109.31541 * 298.63630 * 12 11 9 14 14 N 1.46928 * 108.77755 * 54.62983 * 13 12 11 15 15 C 1.34784 * 120.62472 * 126.36798 * 14 13 12 16 16 O 1.21588 * 119.99404 * 174.96353 * 15 14 13 17 17 N 1.34769 * 120.00324 * 354.96884 * 15 14 13 18 18 C 1.46504 * 120.00303 * 185.07802 * 17 15 14 19 19 C 1.52992 * 109.47364 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.54382 * 59.99623 * 19 18 17 21 21 O 1.20829 * 120.00025 * 120.00118 * 20 19 18 22 22 O 1.34228 * 120.00192 * 300.00062 * 20 19 18 23 23 C 1.53176 * 109.54381 * 299.81797 * 19 18 17 24 24 C 1.53276 * 109.06738 * 297.03216 * 23 19 18 25 25 O 1.42912 * 109.46068 * 302.44696 * 24 23 19 26 26 C 1.42902 * 114.09764 * 61.15365 * 25 24 23 27 27 C 1.53096 * 109.41211 * 298.84547 * 26 25 24 28 28 C 1.46921 * 118.73996 * 306.65049 * 14 13 12 29 29 H 0.96996 * 119.99830 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.45640 * 61.29556 * 11 9 7 31 31 H 1.08997 * 109.45889 * 301.33574 * 11 9 7 32 32 H 1.08997 * 109.49343 * 178.68025 * 12 11 9 33 33 H 1.09000 * 109.49515 * 58.58602 * 12 11 9 34 34 H 1.09008 * 109.58582 * 294.84858 * 13 12 11 35 35 H 1.09001 * 109.70739 * 174.49475 * 13 12 11 36 36 H 0.97000 * 120.00277 * 5.07074 * 17 15 14 37 37 H 1.09003 * 109.46676 * 299.99619 * 18 17 15 38 38 H 1.09000 * 109.47206 * 59.98951 * 18 17 15 39 39 H 0.96710 * 117.00248 * 180.02562 * 22 20 19 40 40 H 1.08998 * 109.52374 * 57.02289 * 23 19 18 41 41 H 1.09000 * 109.52255 * 177.20431 * 23 19 18 42 42 H 1.08993 * 109.46430 * 182.44886 * 24 23 19 43 43 H 1.09006 * 109.46547 * 62.44275 * 24 23 19 44 44 H 1.09002 * 109.48008 * 178.86724 * 26 25 24 45 45 H 1.08995 * 109.48791 * 58.83006 * 26 25 24 46 46 H 1.08998 * 109.52383 * 297.69622 * 27 26 25 47 47 H 1.09010 * 109.57035 * 177.54877 * 27 26 25 48 48 H 1.09000 * 109.58586 * 173.14450 * 28 14 13 49 49 H 1.08996 * 109.58511 * 293.55878 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8750 -0.6792 0.8903 11 6 4.0223 -2.6368 0.0010 12 6 5.5524 -2.6380 0.0346 13 6 6.0873 -1.9356 -1.2172 14 7 5.4865 -0.5974 -1.3018 15 6 6.2632 0.4975 -1.4228 16 8 5.7535 1.5896 -1.5839 17 7 7.6047 0.3818 -1.3655 18 6 8.4450 1.5818 -1.3852 19 6 9.9177 1.1744 -1.3093 20 6 10.2610 0.3024 -2.4894 21 8 11.1189 0.6482 -3.2669 22 8 9.6138 -0.8585 -2.6770 23 6 10.1695 0.4018 -0.0108 24 6 9.8924 1.3235 1.1820 25 8 10.7211 2.4842 1.0894 26 6 10.4959 3.2699 -0.0827 27 6 10.7977 2.4281 -1.3253 28 6 4.0235 -0.4749 -1.2456 29 1 -0.4850 0.8400 -0.0004 30 1 3.6786 -3.1436 -0.9007 31 1 3.6394 -3.1576 0.8785 32 1 5.9149 -3.6656 0.0582 33 1 5.8971 -2.1096 0.9235 34 1 5.8198 -2.5127 -2.1025 35 1 7.1717 -1.8460 -1.1534 36 1 8.0140 -0.4959 -1.3111 37 1 8.2676 2.1344 -2.3078 38 1 8.1982 2.2122 -0.5309 39 1 9.8689 -1.3839 -3.4478 40 1 9.5072 -0.4629 0.0328 41 1 11.2069 0.0689 0.0197 42 1 10.1113 0.7937 2.1090 43 1 8.8445 1.6236 1.1736 44 1 11.1496 4.1420 -0.0669 45 1 9.4560 3.5954 -0.1080 46 1 11.8479 2.1362 -1.3214 47 1 10.5851 3.0109 -2.2217 48 1 3.7466 0.5782 -1.1979 49 1 3.5844 -0.9304 -2.1331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:41 Heat of formation + Delta-G solvation = -159.348481 kcal Electronic energy + Delta-G solvation = -32266.957934 eV Core-core repulsion = 28001.252712 eV Total energy + Delta-G solvation = -4265.705222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.60729 -39.95548 -39.38353 -37.25046 -36.60030 -35.73097 -33.73111 -32.82548 -31.87300 -31.59116 -30.49475 -27.64267 -25.95663 -25.23419 -24.40108 -23.83270 -22.61548 -22.06410 -20.21825 -19.70176 -19.07321 -18.43722 -17.75157 -17.57018 -16.76039 -16.40978 -16.35548 -15.96991 -15.70837 -15.30890 -15.09521 -14.85323 -14.27872 -14.18934 -13.97050 -13.95726 -13.67070 -13.37628 -13.08989 -12.96895 -12.83834 -12.76592 -12.39960 -12.18682 -12.00601 -11.81984 -11.81558 -11.36205 -11.23675 -11.07166 -11.06239 -10.72144 -10.63695 -10.41635 -10.11239 -9.92139 -9.84085 -9.72717 -9.24567 -9.11386 -9.03062 -8.58874 -7.98975 -6.10335 -4.11995 1.73876 2.48016 2.85068 3.39351 3.47221 3.49072 3.50211 3.58345 3.88765 4.03992 4.09871 4.26713 4.43041 4.46187 4.64608 4.78581 4.86222 5.08031 5.10768 5.13840 5.22286 5.22920 5.29240 5.30181 5.34697 5.40557 5.44217 5.53573 5.61008 5.71242 5.77704 5.96133 6.05908 6.08244 6.14610 6.38083 6.48955 6.54586 6.59922 6.72012 6.78331 6.85823 7.10883 7.28829 7.44157 7.46067 7.73084 8.23651 8.47957 8.89294 8.93068 9.51326 11.01637 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.003603 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.100077 B = 7768.585360 C = 8436.376741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.116 3.884 14 N -0.622 5.622 15 C 0.702 3.298 16 O -0.593 6.593 17 N -0.750 5.750 18 C 0.145 3.855 19 C -0.062 4.062 20 C 0.493 3.507 21 O -0.508 6.508 22 O -0.512 6.512 23 C -0.143 4.143 24 C 0.059 3.941 25 O -0.378 6.378 26 C 0.056 3.944 27 C -0.132 4.132 28 C 0.120 3.880 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.413 0.587 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.579 -1.494 -1.675 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.095 0.905 9 C -0.016 4.016 10 H 0.048 0.952 11 C -0.137 4.137 12 C -0.175 4.175 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.404 3.596 16 O -0.471 6.471 17 N -0.413 5.413 18 C 0.020 3.980 19 C -0.064 4.064 20 C 0.335 3.665 21 O -0.395 6.395 22 O -0.325 6.325 23 C -0.181 4.181 24 C -0.018 4.018 25 O -0.297 6.297 26 C -0.020 4.020 27 C -0.171 4.171 28 C -0.001 4.001 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.241 0.759 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.273 0.727 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.278 -0.215 -1.531 24.327 hybrid contribution 0.559 -0.006 -0.941 1.095 sum 24.837 -0.222 -2.472 24.961 Atomic orbital electron populations 1.69888 1.06290 1.27155 1.50028 1.25042 0.94750 0.99109 0.94047 0.86964 0.79518 0.83393 0.79026 1.19867 1.22401 1.18952 1.20951 0.88189 0.94612 1.51701 0.90463 1.19431 0.96786 0.92230 0.93154 0.95240 1.21426 0.91895 0.98870 1.01530 1.21993 0.98747 0.99415 0.97317 1.21569 0.96270 0.84003 0.98962 1.47645 1.07936 1.04373 1.75920 1.15902 0.80882 0.84708 0.78120 1.90910 1.73181 1.25728 1.57313 1.45353 1.04900 1.09359 1.81670 1.21202 0.84955 0.88145 1.03709 1.20931 0.97610 0.95426 0.92397 1.23161 0.77868 0.79692 0.85808 1.90728 1.31225 1.72135 1.45443 1.84425 1.63067 1.33276 1.51724 1.22304 1.03791 0.99269 0.92745 1.22683 0.95235 0.86087 0.97803 1.87966 1.62102 1.37542 1.42041 1.22715 1.01921 0.93667 0.83728 1.22132 1.00240 0.94321 1.00364 1.22411 0.74506 1.02408 1.00798 0.92511 0.92501 0.92232 0.91708 0.92047 0.91596 0.91562 0.75902 0.90841 0.89856 0.72664 0.89326 0.89931 0.87876 0.91951 0.87826 0.92121 0.89314 0.89310 0.90342 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 3 Si 0.88 23.29 24.32 -169.99 -4.13 19.15 16 4 H -0.27 -7.34 6.93 56.52 0.39 -6.94 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.26 -6.96 6.53 56.52 0.37 -6.59 16 7 C -0.52 -14.18 9.15 -34.44 -0.31 -14.50 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 0.08 1.83 -91.87 -0.17 -0.08 16 10 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 11 C -0.10 -1.80 5.11 -26.68 -0.14 -1.94 16 12 C -0.14 -1.88 6.08 -26.61 -0.16 -2.04 16 13 C 0.12 1.54 6.43 -3.71 -0.02 1.52 16 14 N -0.62 -11.33 2.98 -178.77 -0.53 -11.86 16 15 C 0.70 12.95 8.29 -86.92 -0.72 12.23 16 16 O -0.59 -13.58 15.79 5.29 0.08 -13.49 16 17 N -0.75 -9.80 4.66 -65.23 -0.30 -10.10 16 18 C 0.15 1.65 4.01 -4.04 -0.02 1.64 16 19 C -0.06 -0.55 0.50 -155.48 -0.08 -0.62 16 20 C 0.49 4.65 6.92 36.00 0.25 4.90 16 21 O -0.51 -6.08 16.73 -18.75 -0.31 -6.39 16 22 O -0.51 -3.63 10.97 -39.25 -0.43 -4.06 16 23 C -0.14 -1.09 4.74 -26.50 -0.13 -1.21 16 24 C 0.06 0.49 6.57 37.30 0.25 0.73 16 25 O -0.38 -3.58 10.77 -35.23 -0.38 -3.96 16 26 C 0.06 0.44 6.57 37.21 0.24 0.69 16 27 C -0.13 -1.07 4.23 -26.59 -0.11 -1.18 16 28 C 0.12 2.67 5.07 -3.94 -0.02 2.65 16 29 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 0.68 5.56 -51.93 -0.29 0.39 16 36 H 0.40 4.29 2.81 -40.82 -0.11 4.17 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.98 5.01 -51.93 -0.26 0.72 16 39 H 0.41 1.37 9.10 45.56 0.41 1.79 16 40 H 0.09 0.63 6.81 -51.93 -0.35 0.28 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.59 6.60 -51.93 -0.34 0.24 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.49 6.60 -51.93 -0.34 0.15 16 46 H 0.09 0.73 8.03 -51.93 -0.42 0.32 16 47 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.08 1.99 2.35 -51.93 -0.12 1.87 16 49 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -36.30 367.60 -7.38 -43.68 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.45 Total: 3.30 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.24 Total: 4.80 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.06 Total: -48.56 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -1.04 Total: -27.91 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.13 Total: 19.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.30 -7.38 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.668 kcal (2) G-P(sol) polarization free energy of solvation -36.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds