Wall clock time and date at job start Sat Apr 11 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48510 * 109.46958 * 270.00125 * 3 2 1 5 5 H 1.48496 * 109.47019 * 29.99567 * 3 2 1 6 6 H 1.48492 * 109.47509 * 150.00107 * 3 2 1 7 7 C 1.37883 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99890 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99849 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.50056 * 59.93788 * 9 7 2 11 11 C 1.53051 * 109.49554 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53686 * 181.31340 * 11 9 7 13 13 C 1.53185 * 109.31541 * 298.63630 * 12 11 9 14 14 N 1.46928 * 108.77755 * 54.62983 * 13 12 11 15 15 C 1.34784 * 120.62472 * 126.36798 * 14 13 12 16 16 O 1.21588 * 119.99404 * 174.96353 * 15 14 13 17 17 N 1.34769 * 120.00324 * 354.96884 * 15 14 13 18 18 C 1.46504 * 120.00303 * 185.07802 * 17 15 14 19 19 C 1.52992 * 109.47364 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.54382 * 59.99623 * 19 18 17 21 21 O 1.20829 * 120.00025 * 120.00118 * 20 19 18 22 22 O 1.34228 * 120.00192 * 300.00062 * 20 19 18 23 23 C 1.53176 * 109.54381 * 299.81797 * 19 18 17 24 24 C 1.53276 * 109.06738 * 297.03216 * 23 19 18 25 25 O 1.42912 * 109.46068 * 302.44696 * 24 23 19 26 26 C 1.42902 * 114.09764 * 61.15365 * 25 24 23 27 27 C 1.53096 * 109.41211 * 298.84547 * 26 25 24 28 28 C 1.46921 * 118.73996 * 306.65049 * 14 13 12 29 29 H 0.96996 * 119.99830 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.45640 * 61.29556 * 11 9 7 31 31 H 1.08997 * 109.45889 * 301.33574 * 11 9 7 32 32 H 1.08997 * 109.49343 * 178.68025 * 12 11 9 33 33 H 1.09000 * 109.49515 * 58.58602 * 12 11 9 34 34 H 1.09008 * 109.58582 * 294.84858 * 13 12 11 35 35 H 1.09001 * 109.70739 * 174.49475 * 13 12 11 36 36 H 0.97000 * 120.00277 * 5.07074 * 17 15 14 37 37 H 1.09003 * 109.46676 * 299.99619 * 18 17 15 38 38 H 1.09000 * 109.47206 * 59.98951 * 18 17 15 39 39 H 0.96710 * 117.00248 * 180.02562 * 22 20 19 40 40 H 1.08998 * 109.52374 * 57.02289 * 23 19 18 41 41 H 1.09000 * 109.52255 * 177.20431 * 23 19 18 42 42 H 1.08993 * 109.46430 * 182.44886 * 24 23 19 43 43 H 1.09006 * 109.46547 * 62.44275 * 24 23 19 44 44 H 1.09002 * 109.48008 * 178.86724 * 26 25 24 45 45 H 1.08995 * 109.48791 * 58.83006 * 26 25 24 46 46 H 1.08998 * 109.52383 * 297.69622 * 27 26 25 47 47 H 1.09010 * 109.57035 * 177.54877 * 27 26 25 48 48 H 1.09000 * 109.58586 * 173.14450 * 28 14 13 49 49 H 1.08996 * 109.58511 * 293.55878 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8750 -0.6792 0.8903 11 6 4.0223 -2.6368 0.0010 12 6 5.5524 -2.6380 0.0346 13 6 6.0873 -1.9356 -1.2172 14 7 5.4865 -0.5974 -1.3018 15 6 6.2632 0.4975 -1.4228 16 8 5.7535 1.5896 -1.5839 17 7 7.6047 0.3818 -1.3655 18 6 8.4450 1.5818 -1.3852 19 6 9.9177 1.1744 -1.3093 20 6 10.2610 0.3024 -2.4894 21 8 11.1189 0.6482 -3.2669 22 8 9.6138 -0.8585 -2.6770 23 6 10.1695 0.4018 -0.0108 24 6 9.8924 1.3235 1.1820 25 8 10.7211 2.4842 1.0894 26 6 10.4959 3.2699 -0.0827 27 6 10.7977 2.4281 -1.3253 28 6 4.0235 -0.4749 -1.2456 29 1 -0.4850 0.8400 -0.0004 30 1 3.6786 -3.1436 -0.9007 31 1 3.6394 -3.1576 0.8785 32 1 5.9149 -3.6656 0.0582 33 1 5.8971 -2.1096 0.9235 34 1 5.8198 -2.5127 -2.1025 35 1 7.1717 -1.8460 -1.1534 36 1 8.0140 -0.4959 -1.3111 37 1 8.2676 2.1344 -2.3078 38 1 8.1982 2.2122 -0.5309 39 1 9.8689 -1.3839 -3.4478 40 1 9.5072 -0.4629 0.0328 41 1 11.2069 0.0689 0.0197 42 1 10.1113 0.7937 2.1090 43 1 8.8445 1.6236 1.1736 44 1 11.1496 4.1420 -0.0669 45 1 9.4560 3.5954 -0.1080 46 1 11.8479 2.1362 -1.3214 47 1 10.5851 3.0109 -2.2217 48 1 3.7466 0.5782 -1.1979 49 1 3.5844 -0.9304 -2.1331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:41 Heat of formation + Delta-G solvation = -187.088760 kcal Electronic energy + Delta-G solvation = -32268.160843 eV Core-core repulsion = 28001.252712 eV Total energy + Delta-G solvation = -4266.908131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.39718 -41.25942 -40.09613 -38.68716 -37.28608 -36.71550 -35.39464 -34.25845 -33.33804 -32.23124 -32.13166 -28.55708 -27.08778 -26.80600 -25.60771 -24.68472 -23.54917 -23.26009 -21.71296 -20.70156 -20.22775 -19.41150 -18.94509 -18.71502 -18.29148 -17.45911 -17.07978 -16.99432 -16.76135 -16.38759 -16.24943 -15.93417 -15.51942 -15.48996 -15.32034 -15.07163 -14.84123 -14.64487 -14.39415 -14.29331 -13.99678 -13.77552 -13.50192 -13.42737 -13.13887 -12.89696 -12.72137 -12.58366 -12.42956 -12.31761 -12.10545 -11.93313 -11.83467 -11.79815 -11.56880 -11.39989 -11.36572 -11.04034 -10.96814 -10.78909 -10.61379 -10.26690 -9.42590 -8.38030 -6.39515 1.01497 1.24310 1.31128 1.41849 1.57106 1.86556 2.08672 2.22089 2.84318 2.89397 3.00660 3.23517 3.35787 3.51978 3.85242 3.99806 4.00794 4.07675 4.13932 4.17124 4.17806 4.41430 4.46275 4.47053 4.53842 4.56189 4.58906 4.65134 4.68681 4.74539 4.75286 4.89396 4.94424 4.98558 5.01575 5.06135 5.15476 5.23608 5.34681 5.42358 5.50649 5.56192 5.64171 5.71830 5.98302 6.16001 6.28499 6.69740 6.84475 7.00123 7.26280 7.50904 8.78084 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.003603 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.100077 B = 7768.585360 C = 8436.376741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.029 3.971 3 Si 0.938 3.062 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.004 3.996 10 H 0.015 0.985 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.625 5.625 15 C 0.697 3.303 16 O -0.644 6.644 17 N -0.725 5.725 18 C 0.145 3.855 19 C -0.056 4.056 20 C 0.498 3.502 21 O -0.536 6.536 22 O -0.507 6.507 23 C -0.138 4.138 24 C 0.055 3.945 25 O -0.392 6.392 26 C 0.055 3.945 27 C -0.129 4.129 28 C 0.127 3.873 29 H 0.267 0.733 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.432 0.568 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.048 0.952 44 H 0.120 0.880 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.904 -3.124 -1.593 28.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.169 4.169 3 Si 0.769 3.231 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.070 0.930 9 C -0.016 4.016 10 H 0.033 0.967 11 C -0.135 4.135 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.361 5.361 15 C 0.398 3.602 16 O -0.526 6.526 17 N -0.387 5.387 18 C 0.020 3.980 19 C -0.058 4.058 20 C 0.341 3.659 21 O -0.425 6.425 22 O -0.321 6.321 23 C -0.175 4.175 24 C -0.021 4.021 25 O -0.310 6.310 26 C -0.022 4.022 27 C -0.167 4.167 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.258 0.742 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.295 0.705 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.066 0.934 44 H 0.138 0.862 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.665 -1.914 -1.445 27.769 hybrid contribution -0.470 0.412 -0.989 1.170 sum 27.195 -1.502 -2.433 27.345 Atomic orbital electron populations 1.69983 1.07533 1.27820 1.52507 1.25612 0.95148 1.01615 0.94574 0.86055 0.78263 0.80766 0.78055 1.21213 1.22264 1.19084 1.21338 0.90981 0.93165 1.49384 0.93036 1.19365 0.93707 0.95711 0.92810 0.96654 1.21369 0.95518 0.95089 1.01566 1.21946 0.94872 1.02174 0.97457 1.21953 0.98210 0.81429 0.99606 1.47534 1.06272 1.06438 1.75885 1.16111 0.82282 0.83892 0.77911 1.90877 1.74444 1.27780 1.59474 1.45104 1.02961 1.10712 1.79965 1.21262 0.86307 0.87434 1.02995 1.20882 0.95555 0.96073 0.93255 1.23136 0.77397 0.80046 0.85319 1.90730 1.32574 1.72907 1.46299 1.84347 1.62427 1.32553 1.52805 1.22309 1.04813 0.99060 0.91354 1.22771 0.94315 0.86073 0.98955 1.87952 1.62344 1.38079 1.42657 1.22805 1.02020 0.94055 0.83287 1.22104 1.00097 0.94068 1.00397 1.21884 0.77618 1.00043 1.00027 0.92411 0.92297 0.92529 0.87306 0.92054 0.89859 0.87720 0.74241 0.92031 0.90282 0.70450 0.88292 0.88690 0.86346 0.93421 0.86233 0.92730 0.89082 0.89386 0.93567 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 2 C 0.03 1.73 5.45 84.66 0.46 2.19 16 3 Si 0.94 50.11 24.32 68.60 1.67 51.78 16 4 H -0.28 -15.65 6.93 99.48 0.69 -14.96 16 5 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.27 -14.03 6.53 99.48 0.65 -13.38 16 7 C -0.51 -28.57 9.15 25.60 0.23 -28.34 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.07 16 9 C 0.00 0.17 1.83 -11.60 -0.02 0.15 16 10 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 11 C -0.10 -3.33 5.11 30.63 0.16 -3.18 16 12 C -0.13 -2.92 6.08 30.67 0.19 -2.74 16 13 C 0.11 2.44 6.43 86.36 0.56 2.99 16 14 N -0.63 -21.47 2.98 -837.76 -2.50 -23.97 16 15 C 0.70 24.67 8.29 179.05 1.49 26.15 16 16 O -0.64 -29.55 15.79 -3.99 -0.06 -29.61 16 17 N -0.72 -17.10 4.66 -478.54 -2.23 -19.33 16 18 C 0.14 3.08 4.01 86.38 0.35 3.43 16 19 C -0.06 -0.86 0.50 -52.81 -0.03 -0.88 16 20 C 0.50 7.99 6.92 71.24 0.49 8.48 16 21 O -0.54 -11.64 16.73 21.96 0.37 -11.27 16 22 O -0.51 -5.17 10.97 -51.39 -0.56 -5.73 16 23 C -0.14 -1.65 4.74 30.75 0.15 -1.50 16 24 C 0.06 0.79 6.57 72.07 0.47 1.27 16 25 O -0.39 -6.71 10.77 -148.98 -1.60 -8.31 16 26 C 0.05 0.78 6.57 72.01 0.47 1.26 16 27 C -0.13 -1.86 4.23 30.68 0.13 -1.73 16 28 C 0.13 5.64 5.07 86.22 0.44 6.08 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.10 1.54 5.56 -2.39 -0.01 1.52 16 36 H 0.41 7.17 2.81 -92.71 -0.26 6.91 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.81 5.01 -2.39 -0.01 1.80 16 39 H 0.43 1.11 9.10 -74.05 -0.67 0.43 16 40 H 0.10 0.98 6.81 -2.39 -0.02 0.96 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 0.83 6.60 -2.38 -0.02 0.81 16 44 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 0.84 6.60 -2.39 -0.02 0.83 16 46 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 47 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.05 2.37 2.35 -2.39 -0.01 2.36 16 49 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -82.14 367.60 0.90 -81.24 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -0.01 Total: 10.22 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.53 Total: 13.63 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -4.43 Total: -101.95 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -1.86 Total: -54.93 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 1.67 Total: 51.78 kcal Total: -82.14 0.90 -81.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.848 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds