Wall clock time and date at job start Sat Apr 11 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99844 * 2 1 4 4 H 1.48493 * 109.47120 * 240.00032 * 3 2 1 5 5 H 1.48503 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47086 * 120.00005 * 3 2 1 7 7 C 1.37876 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00526 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99549 * 0.27797 * 7 2 1 10 10 H 1.09001 * 109.49777 * 299.72202 * 9 7 2 11 11 C 1.53040 * 109.49428 * 179.65692 * 9 7 2 12 12 C 1.53042 * 109.53459 * 178.68207 * 11 9 7 13 13 C 1.53192 * 109.31562 * 61.36782 * 12 11 9 14 14 N 1.46930 * 108.77294 * 305.36546 * 13 12 11 15 15 C 1.34776 * 120.62899 * 233.60754 * 14 13 12 16 16 O 1.21592 * 119.99938 * 174.77066 * 15 14 13 17 17 N 1.34772 * 119.99970 * 354.77390 * 15 14 13 18 18 C 1.46500 * 120.00206 * 184.98755 * 17 15 14 19 19 C 1.52998 * 109.47486 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.54142 * 59.82330 * 19 18 17 21 21 O 1.20821 * 119.99833 * 120.00220 * 20 19 18 22 22 O 1.34223 * 119.99943 * 299.99687 * 20 19 18 23 23 C 1.53180 * 109.54347 * 299.55765 * 19 18 17 24 24 C 1.53097 * 109.15994 * 297.11202 * 23 19 18 25 25 O 1.42903 * 109.41502 * 302.39337 * 24 23 19 26 26 C 1.42898 * 114.10302 * 61.15715 * 25 24 23 27 27 C 1.53098 * 109.41473 * 298.84480 * 26 25 24 28 28 C 1.46931 * 118.76620 * 53.58453 * 14 13 12 29 29 H 0.97001 * 120.00262 * 359.97438 * 1 2 3 30 30 H 1.08989 * 109.46343 * 298.70007 * 11 9 7 31 31 H 1.09006 * 109.45962 * 58.68016 * 11 9 7 32 32 H 1.09000 * 109.49720 * 181.31839 * 12 11 9 33 33 H 1.09004 * 109.49578 * 301.41071 * 12 11 9 34 34 H 1.09002 * 109.58435 * 65.14781 * 13 12 11 35 35 H 1.08998 * 109.58554 * 185.57632 * 13 12 11 36 36 H 0.96997 * 120.00313 * 4.99265 * 17 15 14 37 37 H 1.09004 * 109.47132 * 300.00032 * 18 17 15 38 38 H 1.09002 * 109.47401 * 59.99878 * 18 17 15 39 39 H 0.96705 * 116.99905 * 179.97438 * 22 20 19 40 40 H 1.08999 * 109.52207 * 57.01412 * 23 19 18 41 41 H 1.08993 * 109.52115 * 177.20923 * 23 19 18 42 42 H 1.08998 * 109.47404 * 182.40747 * 24 23 19 43 43 H 1.09000 * 109.49059 * 62.38048 * 24 23 19 44 44 H 1.08995 * 109.48472 * 178.86166 * 26 25 24 45 45 H 1.08999 * 109.48818 * 58.82729 * 26 25 24 46 46 H 1.08997 * 109.52066 * 297.69705 * 27 26 25 47 47 H 1.09003 * 109.57408 * 177.54058 * 27 26 25 48 48 H 1.09002 * 109.61511 * 186.64338 * 28 14 13 49 49 H 1.08995 * 109.56060 * 66.21497 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0052 10 1 0.6243 -2.5612 0.8844 11 6 2.2452 -3.6627 -0.0120 12 6 1.4812 -4.9885 0.0154 13 6 0.6047 -5.0942 -1.2366 14 7 -0.2540 -3.9045 -1.3144 15 6 -1.5905 -4.0291 -1.4358 16 8 -2.2985 -3.0411 -1.4036 17 7 -2.1421 -5.2486 -1.5927 18 6 -3.5815 -5.3761 -1.8339 19 6 -3.9462 -6.8553 -1.9741 20 6 -3.5795 -7.5870 -0.7087 21 8 -4.4334 -8.1559 -0.0708 22 8 -2.3042 -7.6068 -0.2904 23 6 -3.1849 -7.4609 -3.1574 24 6 -3.6228 -6.7621 -4.4472 25 8 -5.0364 -6.8993 -4.6054 26 6 -5.8014 -6.3099 -3.5522 27 6 -5.4510 -6.9904 -2.2263 28 6 0.3714 -2.5762 -1.2570 29 1 -0.4850 0.8400 0.0004 30 1 2.8554 -3.6138 -0.9137 31 1 2.8881 -3.5962 0.8658 32 1 2.1900 -5.8165 0.0342 33 1 0.8519 -5.0275 0.9045 34 1 1.2377 -5.1465 -2.1224 35 1 -0.0150 -5.9887 -1.1743 36 1 -1.5861 -6.0421 -1.5459 37 1 -4.1298 -4.9449 -0.9963 38 1 -3.8444 -4.8482 -2.7506 39 1 -2.1177 -8.0887 0.5270 40 1 -2.1139 -7.3196 -3.0121 41 1 -3.4067 -8.5258 -3.2266 42 1 -3.1158 -7.2180 -5.2976 43 1 -3.3640 -5.7046 -4.3939 44 1 -6.8639 -6.4399 -3.7579 45 1 -5.5713 -5.2465 -3.4868 46 1 -5.7186 -8.0458 -2.2768 47 1 -6.0006 -6.5137 -1.4147 48 1 -0.4019 -1.8095 -1.2079 49 1 0.9849 -2.4230 -2.1447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:44 Heat of formation + Delta-G solvation = -166.612374 kcal Electronic energy + Delta-G solvation = -31993.972904 eV Core-core repulsion = 27727.952696 eV Total energy + Delta-G solvation = -4266.020208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47761 -39.64589 -39.25102 -36.93471 -36.47160 -35.54279 -33.56419 -32.70883 -31.65595 -31.51152 -29.72507 -27.49619 -25.80605 -25.02368 -24.26683 -23.67633 -22.51189 -21.81352 -20.12555 -19.55983 -18.91640 -18.24332 -17.46949 -17.44162 -16.38225 -16.33404 -16.02911 -15.79259 -15.51502 -15.16237 -14.91971 -14.57648 -14.27153 -14.14197 -13.75148 -13.70969 -13.38794 -13.23379 -12.96089 -12.76285 -12.57377 -12.52684 -12.08382 -11.93665 -11.85768 -11.73444 -11.69452 -11.17167 -10.98496 -10.93664 -10.88721 -10.63218 -10.51696 -10.40196 -10.21765 -9.86892 -9.83972 -9.45673 -9.08465 -8.94526 -8.78949 -8.40142 -7.63630 -5.96450 -4.05945 1.86480 2.60973 3.12623 3.33582 3.39294 3.40433 3.55751 3.82208 4.03525 4.15948 4.27616 4.42716 4.49333 4.54937 4.76165 4.86286 4.96176 5.19388 5.22140 5.29446 5.32524 5.33527 5.37222 5.47425 5.49855 5.54426 5.62003 5.63384 5.71857 5.80695 5.97548 6.16662 6.18983 6.31755 6.58494 6.66736 6.74847 6.81349 6.84860 6.99536 7.05206 7.35715 7.49204 7.58906 7.76453 7.94626 8.08090 8.42571 8.58713 8.97475 9.24471 9.59522 11.08272 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.003061 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.543741 B = 9143.967395 C = 9814.644143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.132 4.132 13 C 0.115 3.885 14 N -0.621 5.621 15 C 0.700 3.300 16 O -0.583 6.583 17 N -0.754 5.754 18 C 0.147 3.853 19 C -0.062 4.062 20 C 0.493 3.507 21 O -0.510 6.510 22 O -0.511 6.511 23 C -0.143 4.143 24 C 0.059 3.941 25 O -0.379 6.379 26 C 0.057 3.943 27 C -0.133 4.133 28 C 0.129 3.871 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.413 0.587 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -18.614 -6.574 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.171 4.171 13 C -0.010 4.010 14 N -0.357 5.357 15 C 0.401 3.599 16 O -0.460 6.460 17 N -0.417 5.417 18 C 0.022 3.978 19 C -0.064 4.064 20 C 0.335 3.665 21 O -0.397 6.397 22 O -0.324 6.324 23 C -0.181 4.181 24 C -0.017 4.017 25 O -0.298 6.298 26 C -0.020 4.020 27 C -0.171 4.171 28 C 0.008 3.992 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.238 0.762 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.141 0.859 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.803 -17.764 -6.906 20.595 hybrid contribution 1.085 0.201 1.050 1.523 sum -6.718 -17.563 -5.856 19.695 Atomic orbital electron populations 1.69889 1.05678 1.26887 1.49096 1.25052 0.94865 0.99184 0.94872 0.86672 0.79579 0.83280 0.78538 1.20262 1.21275 1.20340 1.21040 0.92831 0.90186 1.52094 0.92474 1.18972 0.92597 0.92149 0.94221 0.95385 1.21614 0.98538 0.94117 1.00477 1.21935 0.98550 0.99075 0.97519 1.21510 0.93386 0.87620 0.98449 1.47763 1.03425 1.08872 1.75652 1.15928 0.82703 0.82964 0.78258 1.90938 1.60405 1.36711 1.57954 1.45405 1.08040 1.08117 1.80175 1.21147 0.82566 0.91215 1.02896 1.20927 0.98554 0.95844 0.91040 1.23158 0.79911 0.77299 0.86126 1.90719 1.50172 1.42529 1.56294 1.84430 1.29995 1.71635 1.46294 1.22260 1.00943 1.01128 0.93736 1.22640 0.81751 1.00510 0.96828 1.87952 1.17114 1.79111 1.45621 1.22711 0.96722 0.96798 0.85749 1.22129 0.91558 1.03918 0.99476 1.22189 0.98347 0.80563 0.98108 0.92620 0.93217 0.93128 0.92393 0.92241 0.92260 0.91873 0.76238 0.90989 0.90030 0.72692 0.89355 0.90077 0.88037 0.91902 0.87902 0.92030 0.89439 0.89293 0.85877 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 11.39 55.43 0.63 -25.05 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.12 8.57 -34.44 -0.30 -14.41 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 13 C 0.11 1.71 6.39 -3.71 -0.02 1.69 16 14 N -0.62 -12.22 2.97 -178.49 -0.53 -12.75 16 15 C 0.70 13.90 8.29 -86.92 -0.72 13.18 16 16 O -0.58 -14.35 15.77 5.28 0.08 -14.27 16 17 N -0.75 -10.72 4.66 -65.22 -0.30 -11.02 16 18 C 0.15 1.82 4.01 -4.04 -0.02 1.80 16 19 C -0.06 -0.60 0.50 -155.47 -0.08 -0.68 16 20 C 0.49 5.21 6.92 36.01 0.25 5.46 16 21 O -0.51 -6.65 16.73 -18.75 -0.31 -6.97 16 22 O -0.51 -4.33 10.97 -39.24 -0.43 -4.76 16 23 C -0.14 -1.15 4.73 -26.59 -0.13 -1.28 16 24 C 0.06 0.50 6.57 37.21 0.24 0.74 16 25 O -0.38 -3.67 10.76 -35.23 -0.38 -4.05 16 26 C 0.06 0.47 6.57 37.21 0.24 0.71 16 27 C -0.13 -1.16 4.23 -26.59 -0.11 -1.28 16 28 C 0.13 3.09 5.41 -3.71 -0.02 3.07 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.76 5.65 -51.93 -0.29 0.46 16 36 H 0.40 4.76 2.84 -40.82 -0.12 4.64 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.01 5.01 -51.93 -0.26 0.75 16 39 H 0.41 1.98 9.10 45.56 0.41 2.40 16 40 H 0.09 0.68 6.83 -51.93 -0.35 0.32 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.59 6.60 -51.93 -0.34 0.24 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.52 6.61 -51.93 -0.34 0.17 16 46 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.12 3.50 5.11 -51.93 -0.27 3.23 16 49 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -34.62 374.53 -8.46 -43.08 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.59 Total: 6.99 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.25 Total: 6.95 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.20 Total: -48.82 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.04 Total: -30.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.62 -8.46 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.528 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds